Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017310 | OGI:11061060 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:22481093-22485688 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagcgcgcatcggtgatcgggggcaccatggtctcgctcatggtgaagctcagctccatcgccgggccgaggtattcgctgatggcgggcgcgaggagtgatgtcatcttcctcggggccgagctcgagagcatgcacgccttcctcgagaagctctccggggtggacggtccggaccctcaggtgaggtgctggatgaaggaggtgagggagctggcctacgacgtcgaggattgcatcgacgagttcatgcaccgtgtcgatgtcgtccatggtgccgtgacctctaaccatggcttcagcagccttaggggtttggtgagccatgccacccGgctcgtggccgtggcttggatgcaccaccgcctcgccggtgagctcaagggcctaaaggcccgtgccatcgaggtgagcgaacggcgatcgaggtacaaattgggggatgacatagggatgctaggaggctcggccatggccaccgacccacgggtcagtgtcctctacgccgacacaccagatctcgttgggattgatcgaccagcgagtgaaatggtgaactggttaactgatgatgtgcgcactctcaaggtgctctcaatcatcgggtttggtggtttaggaaagacgactctcgccatggaggtgtaccgtagagttggagggcagtatagttgcaaagctttcgcaactgtatcacaaaaggttgacatgaagaagctcttgaaggacttgttatcgcagattgcacaaaatgaggttgaccacatgggcacttgggaggaaggtcaactcattcgcaagcttagagagtgcctactgaacaaaaggtaggccctgtttagattccaactttctttttaaactttcaactttttcgtcacatcgaactttcctacacataaaaactttcaacttttccgtcacatcgttccaatttcttcaaacttccaattttagcgtggaactaaacacagccgtaatactttagggcacattcttttcagcggttcgttttggctaattagatgcacgtaaaacaagaaatgtgattaatatatattaattgagtattaatattaaaaacttggaaaattgacttctttgacttttataaagcaaaatttatatagaaaattttcacacgaaatatactgtttagcagtttaaaaaatatgctatacataagcatttattctcatgttgtcagaggctactcatttcctccatccatcgagccatctactctgatttggcgacttttcataccacagattcaaaaatactattgcctccgtcccAaaatataacaacttttaattgaataaaacatatcttagtactaaattgttatattttaggacgggtgtagtatttttgctaaaactttctacaacaatattgtttagggcttgatcaatttaggaaaatttttaactcgtatgaatagaaaaataaaggaataggaatgcatgtacacatcacatcaattcataggattttttcaagaagtttgaatggatgaatgttgtttttatattctctctataactcgtatgaaaagaaaaattcctatgattttctatactctatttttataaaccaaatgacactggcaggaattaattcttggaaattcaaatcccttgtttttcttcaaaccaaagcccttagataacttttctctaagctatttgttaaattttcatctacccataatgtatccaatcatccagttagaacgtgctcttatgatgtgtggggcgcagagtgggggcgacaccaggaattagagtgcacagacgcactaggggaagaacctttgcaaatatttggccccgttcttttctccaataaaagttggataaacttttggatactcatggcacgcttttcaaactgctaaacggtgcatttcgtgcaaaaactttctatacgaaagttgatttgaaatatcatattaatctatttttcaattttataataattaaaactaaattaatcatacattaatattacctcgttttacgtaaaaaaaactaaatcttcatctttatcttcaggagaaaagaacaccatctttatctagttcaccaatcgatataaaaggaagtcgttcactaactagtaggagtactaagtaaatataataccagtattgtgaagcagttgaaaatttgaagttgtatcgtgaagtactccctccactttgcaaatatttattgttttgggcatgacttatgtgactttgggaaaatatttactttagaaagatAaaaatcatatgtatatattaatcttgaaaagtacttcattaaaatcatgtattcgttgatatttctatatatattgtaatataaaatagtggtcaaatttgttttttttttggacgatgtccttgttcaaaacaacaagtatttacaaaatagagggaagatgtctttggaacttctctaaagagtattgatcttaatgcactgacttttctaaccagtggctgaattgttccataggtacttcatcataattgatgatgtttggagtaaatcagcatgggagaaagtgagatgtgctctacctgagaacaatcattgcagcaggctgctaacaactacaagaattgactcagtagcaaagtcatgttgttctcaccctgatgatctcatctacagaattgaaccactcaaagcatcagattccagaaacttgtttttcaagagaatttttggctatgaggatgtatgcccaccacagttgaaggaagtttcagaccagatcttgaaaaaatgttgtggttcaccattggcaataatcagcatagctagcctgttagctagcaagcctgtcatgttgaaggagcagtgggaaaaggtgcttatatctataggttctgcattagagaagaactctgatcttgaaggaatgaaacaaatactttccctcagttactatgacctcccttactacctgaagacatgtttgctatacctcagtttgtatcctgaggacttcaagattgagagggatagcctgatccagcaatggattgcggaaggattcattggcgaagaaagaggccagtctgtggaggatgtagcagagagttacttcaatgagctcatcaacagaagtatggtccaaccaatggatataaattgtgatggtaaagctcatgcttgtcgggtgcatgacatgatgcttgagcttataatatcgaaggcaattgaagagaattttgtcactttgttaggtggtcatcctgttgcagctaaaccgcaaggaatcactcgccgattatctatccaatgtgataaagagattaccaaaacaaaaggaggaatgaatctgcttcatgctagatccctaagtttatatgtacaagcttgccagttacctccattgtccgattttcgggtcttgagagtattaaatcttgagggatgcctaggcttgtgtgacaatcatctgaaagatatcagcattttgtttcacttgaagtatttgagcctttgtagaacatggatttcaaaactcccaccagaaataggagacctgcatagtttggaaacattagacataagggacacaaatatagaagaactacctggaaccattattaggattgtgcaactgaagtatatacttagtggtggccatacatggggaaaaataaagctacctgatggtatagggagcatggcatccctaagagtcatatctggattcaatatttgttgtagctcgaccaatgcagtgcaagaacttggtactctgaaaggtttaagggagcttacaatcaactggactgatttcagctccggcgatatgaagcgccaagaggctatgatgaatactcttggcaaacttggcacaagtaacctccaatctttcgcgatttgcagtcgcaacttcggttccctggagttcttagattcctggtcgccaccaccaaatcatcttcagagatttcggctgtctgcatacttctttctcccaagagttccaaggtggatggcatcactctgcaatctcattcatttaaacattaacattgaaaaactatcAaatgaagacattcagatccttcaggatttgccgtctctacttcatcttgacttatggttgaaatcacctcagaaggaggacaagatagttattcatggagtaggcttcccatacttacaagagttaatcttcagttgtgaaggaacctctttgatatttgaaccagcagctttgccaaaacttgagaggctacagatggcagttcatgtaaaggaggcaaaatcatatggttaccaatttggtattgagcaccttagatcactcaagaaaatttacatccaattattgtgtgccggtgcaagtgctctagacatcgaggatgctgaagatgcaatccacactattgtgaagtttcatcctggtcatcctaggatagatatccaaaagtgtggtatggacatgcacttagagGAgagaaataagaggcagcatcccgaagaaacgaatgtgcaaaacatgaatgctagcaaagaagatatgaaccatgccaacaagaaaagaaaagaatatcaaagctctagtgcacaataa
More
|
||||||||||
| CDS seq | atggagcgcgcatcggtgatcgggggcaccatggtctcgctcatggtgaagctcagctccatcgccgggccgaggtattcgctgatggcgggcgcgaggagtgatgtcatcttcctcggggccgagctcgagagcatgcacgccttcctcgagaagctctccggggtggacggtccggaccctcaggtgaggtgctggatgaaggaggtgagggagctggcctacgacgtcgaggattgcatcgacgagttcatgcaccgtgtcgatgtcgtccatggtgccgtgacctctaaccatggcttcagcagccttaggggtttggtgagccatgccacccGgctcgtggccgtggcttggatgcaccaccgcctcgccggtgagctcaagggcctaaaggcccgtgccatcgaggtgagcgaacggcgatcgaggtacaaattgggggatgacatagggatgctaggaggctcggccatggccaccgacccacgggtcagtgtcctctacgccgacacaccagatctcgttgggattgatcgaccagcgagtgaaatggtgaactggttaactgatgatgtgcgcactctcaaggtgctctcaatcatcgggtttggtggtttaggaaagacgactctcgccatggaggtgtaccgtagagttggagggcagtatagttgcaaagctttcgcaactgtatcacaaaaggttgacatgaagaagctcttgaaggacttgttatcgcagattgcacaaaatgagaaagtgagatgtgctctacctgagaacaatcattgcagcaggctgctaacaactacaagaattgactcagtagcaaagtcatgttgttctcaccctgatgatctcatctacagaattgaaccactcaaagcatcagattccagaaacttgtttttcaagagaatttttggctatgaggatgtatgcccaccacagttgaaggaagtttcagaccagatcttgaaaaaatgttgtggttcaccattggcaataatcagcatagctagcctgttagctagcaagcctgtcatgttgaaggagcagtgggaaaaggtgcttatatctataggttctgcattagagaagaactctgatcttgaaggaatgaaacaaatactttccctcagttactatgacctcccttactacctgaagacatgtttgctatacctcagtttgtatcctgaggacttcaagattgagagggatagcctgatccagcaatggattgcggaaggattcattggcgaagaaagaggccagtctgtggaggatgtagcagagagttacttcaatgagctcatcaacagaagtatggtccaaccaatggatataaattgtgatggtaaagctcatgcttgtcgggtgcatgacatgatgcttgagcttataatatcgaaggcaattgaagagaattttgtcactttgttaggtggtcatcctgttgcagctaaaccgcaaggaatcactcgccgattatctatccaatgtgataaagagattaccaaaacaaaaggaggaatgaatctgcttcatgctagatccctaagtttatatgtacaagcttgccagttacctccattgtccgattttcgggtcttgagagtattaaatcttgagggatgcctaggcttgtgtgacaatcatctgaaagatatcagcattttgtttcacttgaagtatttgagcctttgtagaacatggatttcaaaactcccaccagaaataggagacctgcatagtttggaaacattagacataagggacacaaatatagaagaactacctggaaccattattaggattgtgcaactgaagtatatacttagtggtggccatacatggggaaaaataaagctacctgatggtatagggagcatggcatccctaagagtcatatctggattcaatatttgttgtagctcgaccaatgcagtgcaagaacttggtactctgaaaggtttaagggagcttacaatcaactggactgatttcagctccggcgatatgaagcgccaagaggctatgatgaatactcttggcaaacttggcacaagtaacctccaatctttcgcgatttgcagtcgcaacttcggttccctggagttcttagattcctggtcgccaccaccaaatcatcttcagagatttcggctgtctgcatacttctttctcccaagagttccaaggtggatggcatcactctgcaatctcattcatttaaacattaacattgaaaaactatcAaatgaagacattcagatccttcaggatttgccgtctctacttcatcttgacttatggttgaaatcacctcagaaggaggacaagatagttattcatggagtaggcttcccatacttacaagagttaatcttcagttgtgaaggaacctctttgatatttgaaccagcagctttgccaaaacttgagaggctacagatggcagttcatgtaaaggaggcaaaatcatatggttaccaatttggtattgagcaccttagatcactcaagaaaatttacatccaattattgtgtgccggtgcaagtgctctagacatcgaggatgctgaagatgcaatccacactattgtgaagtttcatcctggtcatcctaggatagatatccaaaagtgtggtatggacatgcacttagagGAgagaaataagaggcagcatcccgaagaaacgaatgtgcaaaacatgaatgctagcaaagaagatatgaaccatgccaacaagaaaagaaaagaatatcaaagctctagtgcacaataa
More
|
||||||||||
| Protein seq | MERASVIGGTMVSLMVKLSSIAGPRYSLMAGARSDVIFLGAELESMHAFLEKLSGVDGPDPQVRCWMKEVRELAYDVEDCIDEFMHRVDVVHGAVTSNHGFSSLRGLVSHATRLVAVAWMHHRLAGELKGLKARAIEVSERRSRYKLGDDIGMLGGSAMATDPRVSVLYADTPDLVGIDRPASEMVNWLTDDVRTLKVLSIIGFGGLGKTTLAMEVYRRVGGQYSCKAFATVSQKVDMKKLLKDLLSQIAQNEKVRCALPENNHCSRLLTTTRIDSVAKSCCSHPDDLIYRIEPLKASDSRNLFFKRIFGYEDVCPPQLKEVSDQILKKCCGSPLAIISIASLLASKPVMLKEQWEKVLISIGSALEKNSDLEGMKQILSLSYYDLPYYLKTCLLYLSLYPEDFKIERDSLIQQWIAEGFIGEERGQSVEDVAESYFNELINRSMVQPMDINCDGKAHACRVHDMMLELIISKAIEENFVTLLGGHPVAAKPQGITRRLSIQCDKEITKTKGGMNLLHARSLSLYVQACQLPPLSDFRVLRVLNLEGCLGLCDNHLKDISILFHLKYLSLCRTWISKLPPEIGDLHSLETLDIRDTNIEELPGTIIRIVQLKYILSGGHTWGKIKLPDGIGSMASLRVISGFNICCSSTNAVQELGTLKGLRELTINWTDFSSGDMKRQEAMMNTLGKLGTSNLQSFAICSRNFGSLEFLDSWSPPPNHLQRFRLSAYFFLPRVPRWMASLCNLIHLNINIEKLSNEDIQILQDLPSLLHLDLWLKSPQKEDKIVIHGVGFPYLQELIFSCEGTSLIFEPAALPKLERLQMAVHVKEAKSYGYQFGIEHLRSLKKIYIQLLCAGASALDIEDAEDAIHTIVKFHPGHPRIDIQKCGMDMHLEERNKRQHPEETNVQNMNASKEDMNHANKKRKEYQSSSAQ |
||||||||||
| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017310 | OsLima_11g0017310.01 | Chr11 | 22481093 | 22485688 | + | NAM | ||
| CDS seq | atggagcgcgcatcggtgatcgggggcaccatggtctcgctcatggtgaagctcagctccatcgccgggccgaggtattcgctgatggcgggcgcgaggagtgatgtcatcttcctcggggccgagctcgagagcatgcacgccttcctcgagaagctctccggggtggacggtccggaccctcaggtgaggtgctggatgaaggaggtgagggagctggcctacgacgtcgaggattgcatcgacgagttcatgcaccgtgtcgatgtcgtccatggtgccgtgacctctaaccatggcttcagcagccttaggggtttggtgagccatgccacccGgctcgtggccgtggcttggatgcaccaccgcctcgccggtgagctcaagggcctaaaggcccgtgccatcgaggtgagcgaacggcgatcgaggtacaaattgggggatgacatagggatgctaggaggctcggccatggccaccgacccacgggtcagtgtcctctacgccgacacaccagatctcgttgggattgatcgaccagcgagtgaaatggtgaactggttaactgatgatgtgcgcactctcaaggtgctctcaatcatcgggtttggtggtttaggaaagacgactctcgccatggaggtgtaccgtagagttggagggcagtatagttgcaaagctttcgcaactgtatcacaaaaggttgacatgaagaagctcttgaaggacttgttatcgcagattgcacaaaatgagaaagtgagatgtgctctacctgagaacaatcattgcagcaggctgctaacaactacaagaattgactcagtagcaaagtcatgttgttctcaccctgatgatctcatctacagaattgaaccactcaaagcatcagattccagaaacttgtttttcaagagaatttttggctatgaggatgtatgcccaccacagttgaaggaagtttcagaccagatcttgaaaaaatgttgtggttcaccattggcaataatcagcatagctagcctgttagctagcaagcctgtcatgttgaaggagcagtgggaaaaggtgcttatatctataggttctgcattagagaagaactctgatcttgaaggaatgaaacaaatactttccctcagttactatgacctcccttactacctgaagacatgtttgctatacctcagtttgtatcctgaggacttcaagattgagagggatagcctgatccagcaatggattgcggaaggattcattggcgaagaaagaggccagtctgtggaggatgtagcagagagttacttcaatgagctcatcaacagaagtatggtccaaccaatggatataaattgtgatggtaaagctcatgcttgtcgggtgcatgacatgatgcttgagcttataatatcgaaggcaattgaagagaattttgtcactttgttaggtggtcatcctgttgcagctaaaccgcaaggaatcactcgccgattatctatccaatgtgataaagagattaccaaaacaaaaggaggaatgaatctgcttcatgctagatccctaagtttatatgtacaagcttgccagttacctccattgtccgattttcgggtcttgagagtattaaatcttgagggatgcctaggcttgtgtgacaatcatctgaaagatatcagcattttgtttcacttgaagtatttgagcctttgtagaacatggatttcaaaactcccaccagaaataggagacctgcatagtttggaaacattagacataagggacacaaatatagaagaactacctggaaccattattaggattgtgcaactgaagtatatacttagtggtggccatacatggggaaaaataaagctacctgatggtatagggagcatggcatccctaagagtcatatctggattcaatatttgttgtagctcgaccaatgcagtgcaagaacttggtactctgaaaggtttaagggagcttacaatcaactggactgatttcagctccggcgatatgaagcgccaagaggctatgatgaatactcttggcaaacttggcacaagtaacctccaatctttcgcgatttgcagtcgcaacttcggttccctggagttcttagattcctggtcgccaccaccaaatcatcttcagagatttcggctgtctgcatacttctttctcccaagagttccaaggtggatggcatcactctgcaatctcattcatttaaacattaacattgaaaaactatcAaatgaagacattcagatccttcaggatttgccgtctctacttcatcttgacttatggttgaaatcacctcagaaggaggacaagatagttattcatggagtaggcttcccatacttacaagagttaatcttcagttgtgaaggaacctctttgatatttgaaccagcagctttgccaaaacttgagaggctacagatggcagttcatgtaaaggaggcaaaatcatatggttaccaatttggtattgagcaccttagatcactcaagaaaatttacatccaattattgtgtgccggtgcaagtgctctagacatcgaggatgctgaagatgcaatccacactattgtgaagtttcatcctggtcatcctaggatagatatccaaaagtgtggtatggacatgcacttagagGAgagaaataagaggcagcatcccgaagaaacgaatgtgcaaaacatgaatgctagcaaagaagatatgaaccatgccaacaagaaaagaaaagaatatcaaagctctagtgcacaataa
More
|
|||||||
| Protein seq | MERASVIGGTMVSLMVKLSSIAGPRYSLMAGARSDVIFLGAELESMHAFLEKLSGVDGPDPQVRCWMKEVRELAYDVEDCIDEFMHRVDVVHGAVTSNHGFSSLRGLVSHATRLVAVAWMHHRLAGELKGLKARAIEVSERRSRYKLGDDIGMLGGSAMATDPRVSVLYADTPDLVGIDRPASEMVNWLTDDVRTLKVLSIIGFGGLGKTTLAMEVYRRVGGQYSCKAFATVSQKVDMKKLLKDLLSQIAQNEKVRCALPENNHCSRLLTTTRIDSVAKSCCSHPDDLIYRIEPLKASDSRNLFFKRIFGYEDVCPPQLKEVSDQILKKCCGSPLAIISIASLLASKPVMLKEQWEKVLISIGSALEKNSDLEGMKQILSLSYYDLPYYLKTCLLYLSLYPEDFKIERDSLIQQWIAEGFIGEERGQSVEDVAESYFNELINRSMVQPMDINCDGKAHACRVHDMMLELIISKAIEENFVTLLGGHPVAAKPQGITRRLSIQCDKEITKTKGGMNLLHARSLSLYVQACQLPPLSDFRVLRVLNLEGCLGLCDNHLKDISILFHLKYLSLCRTWISKLPPEIGDLHSLETLDIRDTNIEELPGTIIRIVQLKYILSGGHTWGKIKLPDGIGSMASLRVISGFNICCSSTNAVQELGTLKGLRELTINWTDFSSGDMKRQEAMMNTLGKLGTSNLQSFAICSRNFGSLEFLDSWSPPPNHLQRFRLSAYFFLPRVPRWMASLCNLIHLNINIEKLSNEDIQILQDLPSLLHLDLWLKSPQKEDKIVIHGVGFPYLQELIFSCEGTSLIFEPAALPKLERLQMAVHVKEAKSYGYQFGIEHLRSLKKIYIQLLCAGASALDIEDAEDAIHTIVKFHPGHPRIDIQKCGMDMHLEERNKRQHPEETNVQNMNASKEDMNHANKKRKEYQSSSAQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.078949 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0629550 | SBH | 1.040273 | 0.545325 | 0.985531 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41170 | SBH | 0.472281 | 0.314193 | 0.331847 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0629550 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017100 | RBH | 0.067945 | 1.407796 | 0.567068 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017190 | RBH | 0.0 | 0.000000 | 0.114106 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017040 | RBH | 0.0 | 0.797372 | 0.591220 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016690 | RBH | 0.0 | 0.021097 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016970 | RBH | 0.0 | 0.000000 | 1.009710 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0321900 | RBH | 1.041143 | 3.9594775 | 5.2031815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017460 | RBH | 0.000000 | 0.114734 | 0.132091 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0331100 | RBH | 1.2511505 | 6.554668 | 4.359894 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017230 | SBH | 0.041894 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017330 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016850 | RBH | 0.0 | 2.258305 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016710 | RBH | 0.000000 | 0.0 | 0.082335 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016900 | RBH | 0.097757 | 0.743920 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016830 | RBH | 0.055889 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017170 | RBH | 0.0 | 2.615166 | 1.211064 |
