Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0016840 | OGI:11059350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:21939725-21942963 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACATCACGGTGGCCGGCGCCGGCGACGGCGGCAGCGGCGGCGGGAGGCGGACGTGGGTGGTGGAGGTGGAGAGGACGCTGCACGACGCGCCCGACGCGGCGGCGGAGGCGTCGCGGTGGCGGCGCCACTGCATCTACCGCGTCCCGGCGTGCATCAAGGACCTCAAGCCGAAAGCCTACCAGCCGCAGGTGGTGTCGCTCGGCCCCTTCCACCACGGCGACCCCGGGCTGGCCccccatggaggcgcacaagcgccgcgccctgcgccacctcctccgccgcgccgcgcgcccgctggccgacttcgtcgccgccgtcgaggccgtcgccgaccgcctcgaggccgcctacctcgacctcggcgacggctggcgcggcggcgaggcgagggagaggttcttggagatgatgatcgtggacgggtgcttcctgctcgaggtgatgagggcggcggcggcggtgtcgccggcgccgccggcggcggcggctgcGgggaagccgcacgcggcggcggcggcgaaggaggaggaggactacgcggagaacgacccggtgttcagccgccatggcgtgctgtacatggtgccgtacatccgccgcgacatgctcatgctcgagaaccagctgccgctgctggtgctggagaggctcctgttcgtcgagaccgagagggctaatgtcgcccattcgcgagtttcggtaatttctacacggtttcgctatttcacttgccatttttttttggtgtttttcgaattttcgtgttcttataaattttaacttggagctacacttattagtgctcgagaggctcctgttcatcgagaccgaaagaggtccagtgttccttcgtgagtttcggtagattcttaagtcatccaaaatatactagctttatcgtttgctcttcagcttatctggttatatctaaaatttaaaatttaaaatttaaaacttaatttaataaattaacttttcaggcgaagagaaaaagtttcatgcctaaggtttgaaaacgataatcgaatgtaacgaaatcacgacacaacatataattagaaaaaaaatgtTCATTTTCGATACAAGTGTGTCAAAAATGAGAGTTTAATGTAACAAGATGAGATTGTAGGTGGATCTAGTGGGTGGTCGAGAAAAGAATCCTAGTTCAATGCACATATATACATATGTGAAAAAAAAACCTTTAAGAAAAGAAAAAAAATATTTTTAATACTCCCTCCATCCCATAATATAATAACTTAGTACCGGATGTGATACTTTATAGTATGAAGAATCCGGATATGCTTCATATTCAGATTCGTTGTACTATGAAGTATCTCATCTAGTACTAGATTGCTATATTATGGGACCAGGGAGTATATTATGATGCACATTTGATTCATTCGTACTTTTAATTAACTTTGTCATTTTTAGGGTATTTTACAAAAATCATCCATCcatataaaaatcctagagacactactagatgagatgactgataaatagcgaaactgtgttactcctaggtacgttcacctgatgagagatttgctttctcattgcaccgtcatgcaaagcaaaaggctaattaagctgcatataaagtagtatatctgaaaattctttccttgttgacatcacatcacaactatcaaagggtactctttatctttactgcaacattgtttgactaaagcataataattaactactcgatgtggcagataattaaaactaaaccatatataaataccagcagacacaacatcagaagtaatcatgaccgtgtcagggtttactatttcactatgcacaaatctgcaGgggatcgaaaatttcaaaatatttttgtcaaaatagaatttgaataaatcttgaacaaatttaaatagttttcgctaaattgaaaaaaaatcgggcagaatagtttcaaaattcccagaattttaaaatttttcgtactgaaattgcaaaccatggcgatggggttggatcgatatttccgaaattcctgaaaatacggaaatttcattacagaagtatcaaaccattgtgtaggctggaccgttttcccgaaattgcaggtttaccggttgctctgaccatttcagttttttttttttttagtttagcgaaaattcgtttgatgttcaacgctgaccattcgagatttccaaattttgtttcggtctccctggatgcattccgaaatattgaatcctgatgaatgatgatgcatgcatacgcaacatttcggagtgtacctaccagttgctctgaccatttcgcttgtttagtctagcaaaaacttatcaaatttaaagaaaatttgtttgaagttcaaaattgaccgttcaaaatttccaaaTATtatttcgaaatctttttgattgatccttgcacatggatggatggtgcccagaacgaggaccatatcaaccggatggtgctgcgcttcctgtcgccgtcggcgcggacgccggcgctggggacgccgctgggtcaccacccgctggacgcgctccggcggagcatgctgcacggcgagtaccagtcgccgcgccgggggcacggcgcgggcgcccgctccgaccaccgcgacatcatccgccccgccgcctacgccgacgacggcggcggcgacatcatccgctccgccgtggagctctacgaggccgggatccggttccggcgcgcccgcaccgagagcctccacgacgtgcggttccgccacggcgtgctcgcgatgccgcccgtcgccgtcgacgactccaccgagtacatgctcctcaacatgatggcgttcgagcgcctccacccgggcgccggcaacgacgtcaccgcctacgtcttcttcatggacagcatcatcgactcggccaaggacgtggcgctgctgtcgtcgaaggggatcatccagaacgccgtgggcagcgacaaggcggtggcgaagctgttcaacagcatatccaaggacgtggtgctggagccggagagcgcgctcgacggcgtgcagcggcaggtgaacgcctactgccggcagccgtggaacatgtggagggcgaacctgatccacacctacttcaggagcccctgggcgttcatgtcgctcgccgccgccatgttCctccttgtcatgacggtcatgcagaccgtctacaccgtgctgcccttctaccagaacaaggacgccgccggcggtggcggcggggggtcggcggcgccgtctccgatgtga
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| CDS seq | ATGGACATCACGGTGGCCGGCGCCGGCGACGGCGGCAGCGGCGGCGGGAGGCGGACGTGGGTGGTGGAGGTGGAGAGGACGCTGCACGACGCGCCCGACGCGGCGGCGGAGGCGTCGCGGTGGCGGCGCCACTGCATCTACCGCGTCCCGGCGACCTCAAGCCGAAAGCCTACCAGCCGCAGGTGGTGTCGCTCGGCCCCTTCCACCACGGCGACCCCGGGCTGGCCccccatggaggcgcacaagcgccgcgccctgcgccacctcctccgccgcgccgcgcgcccgctggccgacttcgtcgccgccgtcgaggccgtcgccgaccgcctcgaggccgcctacctcgacctcggcgacggctggcgcggcggcgaggcgagggagaggttcttggagatgatgatcgtggacgggtgcttcctgctcgaggtgatgagggcggcggcggcggtgtcgccggcgccgccggcggcggcggctgcGgggaagccgcacgcggcggcggcggcgaaggaggaggaggactacgcggagaacgacccggtgttcagccgccatggcgtgctgtacatggtgccgtacatccgccgcgacatgctcatgctcgagaaccagctgccgctgctggtgctggagaggctcctgttcgtcgagaccgagagggctaatgtcgcccattcgcgagtttcgaacgaggaccatatcaaccggatggtgctgcgcttcctgtcgccgtcggcgcggacgccggcgctggggacgccgctgggtcaccacccgctggacgcgctccggcggagcatgctgcacggcgagtaccagtcgccgcgccgggggcacggcgcgggcgcccgctccgaccaccgcgacatcatccgccccgccgcctacgccgacgacggcggcggcgacatcatccgctccgccgtggagctctacgaggccgggatccggttccggcgcgcccgcaccgagagcctccacgacgtgcggttccgccacggcgtgctcgcgatgccgcccgtcgccgtcgacgactccaccgagtacatgctcctcaacatgatggcgttcgagcgcctccacccgggcgccggcaacgacgtcaccgcctacgtcttcttcatggacagcatcatcgactcggccaaggacgtggcgctgctgtcgtcgaaggggatcatccagaacgccgtgggcagcgacaaggcggtggcgaagctgttcaacagcatatccaaggacgtggtgctggagccggagagcgcgctcgacggcgtgcagcggcaggtgaacgcctactgccggcagccgtggaacatgtggagggcgaacctgatccacacctacttcaggagcccctgggcgttcatgtcgctcgccgccgccatgttCctccttgtcatgacggtcatgcagaccgtctacaccgtgctgcccttctaccagaacaaggacgccgccggcggtggcggcggggggtcggcggcgccgtctccgatgtga
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| Protein seq | MDITVAGAGDGGSGGGRRTWVVEVERTLHDAPDAAAEASRWRRHCIYRVPATSSRKPTSRRWCRSAPSTTATPGWPPMEAHKRRALRHLLRRAARPLADFVAAVEAVADRLEAAYLDLGDGWRGGEARERFLEMMIVDGCFLLEVMRAAAAVSPAPPAAAAAGKPHAAAAAKEEEDYAENDPVFSRHGVLYMVPYIRRDMLMLENQLPLLVLERLLFVETERANVAHSRVSNEDHINRMVLRFLSPSARTPALGTPLGHHPLDALRRSMLHGEYQSPRRGHGAGARSDHRDIIRPAAYADDGGGDIIRSAVELYEAGIRFRRARTESLHDVRFRHGVLAMPPVAVDDSTEYMLLNMMAFERLHPGAGNDVTAYVFFMDSIIDSAKDVALLSSKGIIQNAVGSDKAVAKLFNSISKDVVLEPESALDGVQRQVNAYCRQPWNMWRANLIHTYFRSPWAFMSLAAAMFLLVMTVMQTVYTVLPFYQNKDAAGGGGGGSAAPSPM |
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| Function | UPF0481 protein At3g47200 [UniProtKB/Swiss-Prot:Q9SD53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0016840 | OsLima_11g0016840.01 | Chr11 | 21939725 | 21942963 | + | NAM | ||
| CDS seq | ATGGACATCACGGTGGCCGGCGCCGGCGACGGCGGCAGCGGCGGCGGGAGGCGGACGTGGGTGGTGGAGGTGGAGAGGACGCTGCACGACGCGCCCGACGCGGCGGCGGAGGCGTCGCGGTGGCGGCGCCACTGCATCTACCGCGTCCCGGCGACCTCAAGCCGAAAGCCTACCAGCCGCAGGTGGTGTCGCTCGGCCCCTTCCACCACGGCGACCCCGGGCTGGCCccccatggaggcgcacaagcgccgcgccctgcgccacctcctccgccgcgccgcgcgcccgctggccgacttcgtcgccgccgtcgaggccgtcgccgaccgcctcgaggccgcctacctcgacctcggcgacggctggcgcggcggcgaggcgagggagaggttcttggagatgatgatcgtggacgggtgcttcctgctcgaggtgatgagggcggcggcggcggtgtcgccggcgccgccggcggcggcggctgcGgggaagccgcacgcggcggcggcggcgaaggaggaggaggactacgcggagaacgacccggtgttcagccgccatggcgtgctgtacatggtgccgtacatccgccgcgacatgctcatgctcgagaaccagctgccgctgctggtgctggagaggctcctgttcgtcgagaccgagagggctaatgtcgcccattcgcgagtttcgaacgaggaccatatcaaccggatggtgctgcgcttcctgtcgccgtcggcgcggacgccggcgctggggacgccgctgggtcaccacccgctggacgcgctccggcggagcatgctgcacggcgagtaccagtcgccgcgccgggggcacggcgcgggcgcccgctccgaccaccgcgacatcatccgccccgccgcctacgccgacgacggcggcggcgacatcatccgctccgccgtggagctctacgaggccgggatccggttccggcgcgcccgcaccgagagcctccacgacgtgcggttccgccacggcgtgctcgcgatgccgcccgtcgccgtcgacgactccaccgagtacatgctcctcaacatgatggcgttcgagcgcctccacccgggcgccggcaacgacgtcaccgcctacgtcttcttcatggacagcatcatcgactcggccaaggacgtggcgctgctgtcgtcgaaggggatcatccagaacgccgtgggcagcgacaaggcggtggcgaagctgttcaacagcatatccaaggacgtggtgctggagccggagagcgcgctcgacggcgtgcagcggcaggtgaacgcctactgccggcagccgtggaacatgtggagggcgaacctgatccacacctacttcaggagcccctgggcgttcatgtcgctcgccgccgccatgttCctccttgtcatgacggtcatgcagaccgtctacaccgtgctgcccttctaccagaacaaggacgccgccggcggtggcggcggggggtcggcggcgccgtctccgatgtga
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| Protein seq | MDITVAGAGDGGSGGGRRTWVVEVERTLHDAPDAAAEASRWRRHCIYRVPATSSRKPTSRRWCRSAPSTTATPGWPPMEAHKRRALRHLLRRAARPLADFVAAVEAVADRLEAAYLDLGDGWRGGEARERFLEMMIVDGCFLLEVMRAAAAVSPAPPAAAAAGKPHAAAAAKEEEDYAENDPVFSRHGVLYMVPYIRRDMLMLENQLPLLVLERLLFVETERANVAHSRVSNEDHINRMVLRFLSPSARTPALGTPLGHHPLDALRRSMLHGEYQSPRRGHGAGARSDHRDIIRPAAYADDGGGDIIRSAVELYEAGIRFRRARTESLHDVRFRHGVLAMPPVAVDDSTEYMLLNMMAFERLHPGAGNDVTAYVFFMDSIIDSAKDVALLSSKGIIQNAVGSDKAVAKLFNSISKDVVLEPESALDGVQRQVNAYCRQPWNMWRANLIHTYFRSPWAFMSLAAAMFLLVMTVMQTVYTVLPFYQNKDAAGGGGGGSAAPSPM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0543300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g34090 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0543300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016620 | RBH | 0.0 | 1.336457 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016550 | RBH | 0.0 | 0.779315 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016050 | RBH | 0.0 | 0.061499 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016490 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0313900 | RBH | 0.1996785 | 0.6937915 | 0.105363 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0016870 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0322700 | RBH | 0.1934615 | 1.170431 | 0.2281265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0016620 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0016680 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016350 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016380 | RBH | 0.0 | 1.696221 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016240 | RBH | 0.0 | 0.0 | 0.169010 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016580 | RBH | 0.0 | 0.0 | 0.000000 |
