Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0016560 | OGI:11058920 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:21622925-21623665 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacgacagacagatgaacgacagagtgcttcaatgtttgtggcgtaccgatctggatgacgaagcccgccatgctgtcggcgacgtcctggggctccatcccctagacttatatcacaaaagttattgtcgcttccgtcgagatggacacccaccagcacaaggcctccttaggacaaaaccagtcatgccgtcggccgtggagctgtatgaggcaggaatcgacttcaaggcgatcgagcttaaaacgttgccagacatcaacttcgaacgtggcgtgttgaccatacccgagtacaccgtagactacttctcagagaaagtgttgctcaaCctgatggcgtttgagaggctacacgcagggaccggggacagcatttcggcgtacgtggtcttcatggacaacatcatcgacacggctaaggacgtggcgctgctgagagataagggtatccttgtcaatgggctaggcagcgacgaggagatagctgaactgttcaacaacaggctatccaagggggcagccatgagcatgtctagcacgctcaacgatgtgcacgagaatgtgaatgcccactacaggaagaggtggaacagatggcgtgctaacctaaaacatacctatttcaacaatccatgggcgttcatctccttcatcgccgcctccattctgcttgttgccaccctcctgcagacctcctacagtgtggttgcctaccactgtccacctcattcctaa
More
|
||||||||||
| CDS seq | atggacgacagacagatgaacgacagagtgcttcaatgtttgtggcgtaccgatctggatgacgaagcccgccatgctgtcggcgacgtcctggggctccatcccctagacttatatcacaaaagttattgtcgcttccgtcgagatggacacccaccagcacaaggcctccttaggacaaaaccagtcatgccgtcggccgtggagctgtatgaggcaggaatcgacttcaaggcgatcgagcttaaaacgttgccagacatcaacttcgaacgtggcgtgttgaccatacccgagtacaccgtagactacttctcagagaaagtgttgctcaaCctgatggcgtttgagaggctacacgcagggaccggggacagcatttcggcgtacgtggtcttcatggacaacatcatcgacacggctaaggacgtggcgctgctgagagataagggtatccttgtcaatgggctaggcagcgacgaggagatagctgaactgttcaacaacaggctatccaagggggcagccatgagcatgtctagcacgctcaacgatgtgcacgagaatgtgaatgcccactacaggaagaggtggaacagatggcgtgctaacctaaaacatacctatttcaacaatccatgggcgttcatctccttcatcgccgcctccattctgcttgttgccaccctcctgcagacctcctacagtgtggttgcctaccactgtccacctcattcctaa
More
|
||||||||||
| Protein seq | MDDRQMNDRVLQCLWRTDLDDEARHAVGDVLGLHPLDLYHKSYCRFRRDGHPPAQGLLRTKPVMPSAVELYEAGIDFKAIELKTLPDINFERGVLTIPEYTVDYFSEKVLLNLMAFERLHAGTGDSISAYVVFMDNIIDTAKDVALLRDKGILVNGLGSDEEIAELFNNRLSKGAAMSMSSTLNDVHENVNAHYRKRWNRWRANLKHTYFNNPWAFISFIAASILLVATLLQTSYSVVAYHCPPHS |
||||||||||
| Function | UPF0481 protein At3g47200 [UniProtKB/Swiss-Prot:Q9SD53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0016560 | OsLima_11g0016560.01 | Chr11 | 21622925 | 21623665 | + | NAM | ||
| CDS seq | atggacgacagacagatgaacgacagagtgcttcaatgtttgtggcgtaccgatctggatgacgaagcccgccatgctgtcggcgacgtcctggggctccatcccctagacttatatcacaaaagttattgtcgcttccgtcgagatggacacccaccagcacaaggcctccttaggacaaaaccagtcatgccgtcggccgtggagctgtatgaggcaggaatcgacttcaaggcgatcgagcttaaaacgttgccagacatcaacttcgaacgtggcgtgttgaccatacccgagtacaccgtagactacttctcagagaaagtgttgctcaaCctgatggcgtttgagaggctacacgcagggaccggggacagcatttcggcgtacgtggtcttcatggacaacatcatcgacacggctaaggacgtggcgctgctgagagataagggtatccttgtcaatgggctaggcagcgacgaggagatagctgaactgttcaacaacaggctatccaagggggcagccatgagcatgtctagcacgctcaacgatgtgcacgagaatgtgaatgcccactacaggaagaggtggaacagatggcgtgctaacctaaaacatacctatttcaacaatccatgggcgttcatctccttcatcgccgcctccattctgcttgttgccaccctcctgcagacctcctacagtgtggttgcctaccactgtccacctcattcctaa
More
|
|||||||
| Protein seq | MDDRQMNDRVLQCLWRTDLDDEARHAVGDVLGLHPLDLYHKSYCRFRRDGHPPAQGLLRTKPVMPSAVELYEAGIDFKAIELKTLPDINFERGVLTIPEYTVDYFSEKVLLNLMAFERLHAGTGDSISAYVVFMDNIIDTAKDVALLRDKGILVNGLGSDEEIAELFNNRLSKGAAMSMSSTLNDVHENVNAHYRKRWNRWRANLKHTYFNNPWAFISFIAASILLVATLLQTSYSVVAYHCPPHS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0540600 | SBH | 4.775941 | 6.584410 | 0.885994 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g33450 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0540600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016410 | RBH | 0.0 | 2.149166 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016360 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016330 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015880 | SBH | 0.0 | 0.174273 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016370 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0311100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0016610 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0320400 | SBH | 0.006279 | 0 | 0.116917 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0016700 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0016550 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016260 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016040 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016310 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016490 | SBH | 2.979164 | 0.0 | 2.221103 |
