Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0016180 | OGI:11057590 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:21212980-21213618 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaggcatacaggttgtatctgtagagcatgcgggcggcctggtcgacggcgagcttggccatggcgtcggcgtactgtatgaagacgtagtcgagaccgtcctcggcgctgatgcagacgaacttgccgacgccgaccttcttgtgcacgacgtactccccggcctccagctcccgcgggtccacccggtgacccaacgagctccccgccgccaccacccccttcctcctcccccctcccccttcgtctccgtccccgtcgctctccccctcctgagacgccgccccgtccccgtccccgcgcagctgacgtagccccatccgctgctgctcccggatcatgcgcaggtacgcctccgcctgcgccgggtccacggacaaggccgccgacgacgacgcgtcccgccgccgcacgagcgcgcggaggcggtggttgagctgcgcgatgtcgtcgggtgccacggacgccgcggccgcggtggtggcggcggccgcggccgcggccacgacgaggcgcgcgcggcggggcgggaggaggcggagccgcagccgccgtaccaccaggaccggcgggcggaggaggagtgggttcgggctagcgctgcggggtgggatgggcgcggccgccgcggcggccat
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| CDS seq | atggccgccgcggcggccgcgcccatcccaccccgcagcgctagcccgaacccactcctcctccgcccgccggtcctggtggtacggcggctgcggctccgcctcctcccgccccgccgcgcgcgcctcgtcgtggccgcggccgcggccgccgccaccaccgcggccgcggcgtccgtggcacccgacgacatcgcgcagctcaaccaccgcctccgcgcgctcgtgcggcggcgggacgcgtcgtcgtcggcggccttgtccgtggacccggcgcaggcggaggcgtacctgcgcatgatccgggagcagcagcggatggggctacgtcagctgcgcggggacggggacggggcggcgtctcaggagggggagagcgacggggacggagacgaagggggaggggggaggaggaagggggtggtggcggcggggagctcgttgggtcaccgggtggacccgcgggagctggaggccggggagtacgtcgtgcacaagaaggtcggcgtcggcaagttcgtctgcatcagcgccgaggacggtctcgactacgtcttcatacagtacgccgacgccatggccaagctcgccgtcgaccaggccgcccgcatgctctacagatacaacctgtatgcctga
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| Protein seq | MAAAAAAPIPPRSASPNPLLLRPPVLVVRRLRLRLLPPRRARLVVAAAAAAATTAAAASVAPDDIAQLNHRLRALVRRRDASSSAALSVDPAQAEAYLRMIREQQRMGLRQLRGDGDGAASQEGESDGDGDEGGGGRRKGVVAAGSSLGHRVDPRELEAGEYVVHKKVGVGKFVCISAEDGLDYVFIQYADAMAKLAVDQAARMLYRYNLYA |
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| Function | ATP-dependent DNA helicase At3g02060, chloroplastic [UniProtKB/Swiss-Prot:F4JFJ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0016180 | OsLima_11g0016180.01 | Chr11 | 21212980 | 21213618 | - | NAM | ||
| CDS seq | atggccgccgcggcggccgcgcccatcccaccccgcagcgctagcccgaacccactcctcctccgcccgccggtcctggtggtacggcggctgcggctccgcctcctcccgccccgccgcgcgcgcctcgtcgtggccgcggccgcggccgccgccaccaccgcggccgcggcgtccgtggcacccgacgacatcgcgcagctcaaccaccgcctccgcgcgctcgtgcggcggcgggacgcgtcgtcgtcggcggccttgtccgtggacccggcgcaggcggaggcgtacctgcgcatgatccgggagcagcagcggatggggctacgtcagctgcgcggggacggggacggggcggcgtctcaggagggggagagcgacggggacggagacgaagggggaggggggaggaggaagggggtggtggcggcggggagctcgttgggtcaccgggtggacccgcgggagctggaggccggggagtacgtcgtgcacaagaaggtcggcgtcggcaagttcgtctgcatcagcgccgaggacggtctcgactacgtcttcatacagtacgccgacgccatggccaagctcgccgtcgaccaggccgcccgcatgctctacagatacaacctgtatgcctga
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| Protein seq | MAAAAAAPIPPRSASPNPLLLRPPVLVVRRLRLRLLPPRRARLVVAAAAAAATTAAAASVAPDDIAQLNHRLRALVRRRDASSSAALSVDPAQAEAYLRMIREQQRMGLRQLRGDGDGAASQEGESDGDGDEGGGGRRKGVVAAGSSLGHRVDPRELEAGEYVVHKKVGVGKFVCISAEDGLDYVFIQYADAMAKLAVDQAARMLYRYNLYA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0533100 | RBH | 21.367756 | 18.295496 | 2.483806 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g32880 | RBH | 15.125434 | 13.032321 | 0.732825 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0533100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016080 | RBH | 2.043947 | 0.0 | 1.981714 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016020 | RBH | 0.201041 | 0.0 | 0.484403 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016000 | RBH | 3.734106 | 0.0 | 2.102252 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015550 | RBH | 2.271677 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0305400 | RBH | 32.8349115 | 14.657372 | 11.5304795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0016230 | RBH | 0.151417 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0313900 | RBH | 26.184244 | 27.6841925 | 23.304491 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0016170 | RBH | 0.545988 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015820 | RBH | 1.672389 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0015590 | RBH | 1.256274 | 0.0 | 0.178940 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016080 | RBH | 0.355084 | 1.362219 | 1.842522 |
