Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0016170 | OGI:11057590 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:21205413-21213188 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atataagtagttagcagacgatatatgcccttccctctacttctctcttccacattgaatcttacatggtgttcacaagaggtcagtacagttcgcaattttaccatgcaaatttgtacagtttaacaaaaacaagacttcatcttcattcttataaatgcatctccagtttatctgcattatggtacaggaatcccactttgttgcactaaactaaactatcatcatctggttggacaaaaaaacatgtcgaacaaaatatgtcaattcactggctaacactttctttatcaaacaccatgatttatggtaattaaatgggtcagtgcatgacatcacatatatacatgcagtcgaaaaaaatatatggagactttgggggttctgttaaaaatcctgtaagatatttgaaggtaacttattatgtcaggaagaattttaaccgagtttttcaaggcttccagtttgtttgaactgtcatgctgagtccaagttgatggatttactatcaatcagccattgctatctaacataattttcactagctcttcattccaccaactatcttcctgcaaaagccgggatgagatttcagatatgaaaagagtcattaaaaaggtaaaaacaagattatcatgaagtactgaagtactcaaatgttaccagttcgtgtataggttagtccatcaatgccaacaccttgctgttcgtataacaagaacagccataacaaccataacaatcaagaactatccgttgctgactatcaagatagccgagactgccttctcacaaattgtatcatgttctcacgtataagctgcgggcaaaaccttcatttttcacaaacaagttctagtacttcacaagtgctggtattacagcatagcagtctgctaagcaatgaaaaagccaattcaggagtagagtgtccggcagattgacaagtagttcaccctacaaaaatgtaaatttttgaaaataaaattaatattcacagtatgtccgaagttgaacttttaatgacagaaagctgaaaccccaattcgctttccaatattcatgcttgtatatcctaaaaataacatgtccaatgtgatctttgtgatgcatttcaacaatgaaaaacagtactacatgtagtaataaggatgttagttattatcggtggataaaaaaggacgtgatggtagacaaatctatagttagcttcaagatcactaattaagcagcaaattgctttgccatctaatcaggcttttggaaaatatttgcaaaatatcttttaacaattttgttttcaccaggaaactatggggatactctgatatttaccttaatttcctttccagtgaatgataaggaatttcgatgagtctccaaagacattgcttctctcatgagccgaaataccttcttgttcatgtttgttttcatgatgatcattttgccagatgaatatatcctactgataccaagatctgctgccatccgtcttacatagagctttttcaatagcaactgcaaggaggagaaaggaagacataatgaagtaatcaaacttcaccatcaccaactatggtcacattggcatgatgaaaatctcagaaacagcaaacctccatatcacgaggctcctttccatattgtcgacgaagatcttctgtgaattgtattaaggtccataggtctttctctgcagcttttgcagcttcgttaagcaattccaccggattttcaaggtaacttatgtattcagaggagagacgtgaagaaatgtttatatccagctgtccaaagacacaaagtttgtgaatgaaatcaaaagggcaggttacccagatgaaattattcgtcattgcatgaaaaagctacagcagcaaagacaataaattttgtgcccacctgaacatctttgtaagggacgggaataagacaaaactgatcaacctaaaaagatagaaaatagtcttgtcagaatgatcacagtaaataattaataacgccatgcaacaattcagaaggttatttggctcattaaaggatgtacaaaattaaaaacagaagaactgtatgattgtaccaaatagttggaatattgaaatagtagtatgtggaccaaatgggtaaggactacctgaaattgcctataaaatatcttcgcatgaaacaaagatgataacaatatgcatgccatgaatgagaagcattctcaaataaaacaaatgaggcagtaaaaaaactgggtctagaaggggattacataacaataatcactacttcaagtggcaaacaagaaaaaattgttcaaaacagagttcttttctttaccaagaactagccatcttaaaggcagcaacaaagtagtgaatagatgaatactccctccgtcccataatatagcaacctaggaccggatgtgacacttcatagtacaacgaatttagacaggaagcatgtccggattcgttgtactatgaagtgtcttgtccggtactaggttgctatattataggatggagggagtaaaagatatgtatgatacaaaataaaggatataagaataacaggtgcagaaccAaaaaaaggaagtgaatagttgaataaaagaaaaataatatcatgagcagatatgcgtgattgatgtgtatacctttgacaagctatcaaaaagcatatcaaagaatagatcaatgccaacatttgcaacatctccagattgttgctcaccaaacaagcttccgaaccccctgatacccatatccttctctgcaacatgaaaaccttgaccaagatctgaatgctcctcaatagctccaagtctatcctgcagatggagatattgaactacagatgaagaatgacacaacacaatacagattctgaactcatttaacaaaagatatttcaagggataattgccttattgtcatacaaaagaccccttattttttctgtaagatgccctatagaaatgtatcagaaaatcaaacatcaggtgctgtggaagtagtaaaagctacaatttagttcacttcattttgccatggcataaggctagtcatacaagtggtggtcaggactgagggctcaggaagcatcaatacactgaaacctagtaagcataacatacattccaaagtgccaataatagaaatactgcttattaggtgccaccaagactggttaactgatcttatgtacaacaaactatcattaaaggaaatttaggttatatttctgactgggcttccatatttagtattattgcaaatatgctttcagtaacagtcatcagatgatttggatgctgtgacaagaaaatgaatataaataataaaattaggggcactatggtagagctaaccgttgcaatctttgagagcaaagacttatcagtgtagaagaggtatgcgaaaccttctgtgccggatcttcctactctacctcgcaactgtgaaggaaaaacaaaggggtgaacttgtaaaattaggaagatgcattagaaacaacacggataactagggcacatattacttttaagtacgataacagtctcacagaaggctaaacagagaggcacaggacagctcatactttttcagttcttcgtagcttattttgtatttataaatgagaaaactccagtaagatgctcaaaaactatttgccaatgggcatagttcaacaatcaatcaaatttatgtgctcacatattatcaaatataaatgctaaataactatgccataatgaggtgcttctagtttgtttgctggacaggtgttttgctgtaccccttcttggattgttgttgttgttttatcactctcttatcaatgaaataagagccttttgcctttgtttaaaacaaaatgccataaaggaaaaggaaagcatatcagaaaaacaaagccacctgatatagctgtgcaagcccaaatagttcagcatactgaactaccatcgtgttggcatttggaatatctattccactttcaatgatgtgtgtgcagaccagaattttgacttctccacaagcaaatttttccatagcaagttgtatgttctttgaaactttctgcgggaaaaagaattggcaagaaatttgattatgacgaaagcaccattcgactatgcaaatagaacataaatcttgattgttaacctaacattattccatatataataactagcaacttaagatatagacttgactgaaattgaaggttgtaagctttacagaaaataaatagtcattgacaatcaaaatcaaaacgaactatcgaagaacaaggtcatcgacaaggcccatatagagtttcctgttaaattagtttgaacactaatcagccatgcaaggaaatcctaacaatgataagagagtttcattggtagaaatccacatgttggactaaaaatagcctataataaataatagtgaaatagcatactaaacacatctgaaagtttagtcaataaacctttccatgagcaacagccattggaacatctggaagagaatccttgagaaattgcagcacatcatctattgctgtcgcatgatgaaataaattattaaacataaatgcagatttgcaatctaaattattgaatgactttgcatgatattgcagcttctatatggacagtatagattgttagtgaacgcatccagcaataggctaattgttagaacaatctgcaatcacaagtccaacttgctgagtactaaactgagattgggaatattgagaaaaaaattgttttcaggttcatgcatcacaagtatatgctgtgaacaataagtcatctgaagataacaaagtttccaccttttattcgaggaacaacatagaaaacttgaccaccacgtgccaactcaaacttaatagctgatagagccctttctttgctaaatcctgacacgtaggtccttacagcaactctttctggaggcggcgtagacattaaactgaaatcataatacatatgcttgtgtcatggaaaaaaatgaaaacaattccgatattaaatgcatccaaggtattggagttatgaagaatgaattaaatatagagtcagcagaatagcgctatgatcacattaaatgcacgaattatctcaagaaaacagtagtaactattgcaaatgtaataaaatggctcaagtgaatcccctaaaaaaactctagtgattactcgtaaccattgtccacaaattatctcaagaaaacagtggtaataaattagcaatatctcgtaataaattgtggacaatggttacgagtaataaattagcaatatctcgtccaatatctcgtccaacagaaaacagaagaaaaaaatagtattgttgccatcttacctggcatcacggaaacctgtcaacgcgagatacaaagtacgtggaatgggtgttgcagacagtgtgagaacatcaatagaagccttgtatgatgcaatcttctccttttgttggacaccaaacttctgttgaaacatagagtttgtgaatatatataaaataaaataaaatgcatggctgattttggttgcgagatatttagtcaaaatttatggaacactagagttaagttttcagataaccattcctgacctttagaaaaataacaaaaagtaaacataaaacaatctagtatttttttttgtcgaatataatctacaacaaaaaggctttcccttgctatatatatttcttgtagaaaaccttaatatgattaacttgttcttttcatttctggaaaatactacccatattaccatcattgatgttatcaataacagaaaactatacccaaaaaaatcaaacagagtaaacatttatatttacaaattacaaagagaacctgttcttcatccaccactaggagaccaagattgttatatgccatacgttctgtaagaacagcatgagttccaacaataatatgcaaatcaccattccttatctttgttattagctcatctttttcttctttggtctgtaaagcagaaatgtaccccaagtcatgcagaagataagagacgcaaattccatcactttaacagacaaaatttaaagaaacactaatgccttcctatctgagaacctacatgcccacatatgagcactatcactacaaaaattgctgaccagtaagtacaagaatcccttattgaatgtcagaagaaaaggttcgggaaagacaaaagggacttccttaaaaatatacatttgaacagtacttaataacattcagtgaaacatcaaaaggtagaaaacagggtattattaccgattgttgtacaatcggtaatatatataccttttttttctaacaacaacaaaaggcacatcaactttttttcctaatatgggataagatcataagagcagcacactttctagggtcaggactaatacagtaataccttgtagttaagcaattaatgaatataaaatgatttcacagtaacacaaaaatattactactaacacaataatgcttggttgttaatcaattgaggcatacaaaaaatattgcttggaaatgaaaaacacaatgaattgcctggtggggtaactttgagttgtgccatgctatacctgagcaccactaaacatggcaaccttaatatcaggataattggagaaacgctcagacattacatcataatgttgcttggctagtattacagttggagcaagaaccatagcttgaaatccagcagatataacaatgaatatagcacgcattgcaacttcagttttaccaaacccaacatctccacaaatcaatctgtccattggggtttccctttcagtcagatctttgtcaacatctataaaagcctgtcattaacacgaactgcattaaatccattgatgttgattcaatcctatgtattagtaaagtagtgcatggattacttaatcaactagactcatcagtttgccaataagtcttgcacaaggaaagaatagcagcagcttctctttctaaaaaacgacatcagaatttccaggtgaacaaaagaaagaacaacagtatttgattaagagccgacctggttttggtctggagtgggctcatagggaaattcagcagtaaactgatccattcccacaggcttcgggtaaggaggccttttctgcctcatcctttgtaaatacaactccatcaaattgactaccattttctgaacagcaagcttccctttcagtcttctcttctcccacgtggaaggatcgttcagtttgctcaaattccgtggtctctgcttctcgtgaggtctgcaggaaacatcaatctggataaatggtcaacgtgaatttttactttccaccagaattgaagggacaggcccacaataaaacatttataccaaacattaagtccggaaatagcaatttttacaatgtttatataagtagtaatgaatttttcttgttccttaaatggaggctggaacgtgcagaaaacatgaaagttcttgcagccattcagagcaggaatcaattttggcaaaatgcaattattatgtcaaaattcgcatagctagctactcaggcatacaggttgtatctgtagagcatgcgggcggcctggtcgacggcgagcttggccatggcgtcggcgtactgtatgaagacgtagtcgagaccgtcctcggcgctgatgcagacgaacttgccgacgccgaccttcttgtgcacgacgtactccccggcctccagctcccgcgggtccacccggtgacccaacgagctccccg
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| CDS seq | atggtagtcaatttgatggagttgtatttacaaaggatgaggcagaaaaggcctccttacccgaagcctgtgggaatggatcagtttactgctgaatttccctatgagcccactccagaccaaaaccaggcttttatagatgttgacaaagatctgactgaaagggaaaccccaatggacagattgatttgtggagatgttgggtttggtaaaactgaagttgcaatgcgtgctatattcattgttatatctgctggatttcaagctatggttcttgctccaactgtaatactagccaagcaacattatgatgtaatgtctgagcgtttctccaattatcctgatattaaggttgccatgtttagtggtgctcagaccaaagaagaaaaagatgagctaataacaaagataaggaatggtgatttgcatattattgttggaactcatgctgttcttacagaacgtatggcatataacaatcttggtctcctagtggtggatgaagaacagaagtttggtgtccaacaaaaggagaagattgcatcatacaaggcttctattgatgttctcacactgtctgcaacacccattccacgtactttgtatctcgcgttgacaggtttccgtgatgccagtttaatgtctacgccgcctccagaaagagttgctgtaaggacctacgtgtcaggatttagcaaagaaagggctctatcagctattaagtttgagttggcacgtggtggtcaagttttctatgttgttcctcgaataaaagcaatagatgatgtgctgcaatttctcaaggattctcttccagatgttccaatggctgttgctcatggaaagaaagtttcaaagaacatacaacttgctatggaaaaatttgcttgtggagaagtcaaaattctggtctgcacacacatcattgaaagtggaatagatattccaaatgccaacacgatggtagttcagtatgctgaactatttgggcttgcacagctatatcagttgcgaggtagagtaggaagatccggcacagaaggtttcgcatacctcttctacactgataagtctttgctctcaaagattgcaacggatagacttggagctattgaggagcattcagatcttggtcaaggttttcatgttgcagagaaggatatgggtatcagggggttcggaagcttgtttggtgagcaacaatctggagatgttgcaaatgttggcattgatctattctttgatatgctttttgatagcttgtcaaaggttgatcagttttgtcttattcccgtcccttacaaagatgttcagctggatataaacatttcttcacgtctctcctctgaatacataagttaccttgaaaatccggtggaattgcttaacgaagctgcaaaagctgcagagaaagacctatggaccttaatacaattcacagaagatcttcgtcgacaatatggaaaggagcctcgtgatatggagttgctattgaaaaagctctatgtaagacggatggcagcagatcttggtatcagtaggatatattcatctggcaaaatgatcatcatgaaaacaaacatgaacaagaaggtatttcggctcatgagagaagcaatgtctttggagactcatcgaaattccttatcattcactggaaaggaaattaagggtgaactacttgtcaatctgccggacactctactcctgaattggctttttcattgcttagcagactgctatgctgtaataccagcacttgtgaagtactag
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| Protein seq | MVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY |
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| Function | ATP-dependent DNA helicase At3g02060, chloroplastic [UniProtKB/Swiss-Prot:F4JFJ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0016170 | OsLima_11g0016170.01 | Chr11 | 21205413 | 21213188 | - | NAM | ||
| CDS seq | atggtagtcaatttgatggagttgtatttacaaaggatgaggcagaaaaggcctccttacccgaagcctgtgggaatggatcagtttactgctgaatttccctatgagcccactccagaccaaaaccaggcttttatagatgttgacaaagatctgactgaaagggaaaccccaatggacagattgatttgtggagatgttgggtttggtaaaactgaagttgcaatgcgtgctatattcattgttatatctgctggatttcaagctatggttcttgctccaactgtaatactagccaagcaacattatgatgtaatgtctgagcgtttctccaattatcctgatattaaggttgccatgtttagtggtgctcagaccaaagaagaaaaagatgagctaataacaaagataaggaatggtgatttgcatattattgttggaactcatgctgttcttacagaacgtatggcatataacaatcttggtctcctagtggtggatgaagaacagaagtttggtgtccaacaaaaggagaagattgcatcatacaaggcttctattgatgttctcacactgtctgcaacacccattccacgtactttgtatctcgcgttgacaggtttccgtgatgccagtttaatgtctacgccgcctccagaaagagttgctgtaaggacctacgtgtcaggatttagcaaagaaagggctctatcagctattaagtttgagttggcacgtggtggtcaagttttctatgttgttcctcgaataaaagcaatagatgatgtgctgcaatttctcaaggattctcttccagatgttccaatggctgttgctcatggaaagaaagtttcaaagaacatacaacttgctatggaaaaatttgcttgtggagaagtcaaaattctggtctgcacacacatcattgaaagtggaatagatattccaaatgccaacacgatggtagttcagtatgctgaactatttgggcttgcacagctatatcagttgcgaggtagagtaggaagatccggcacagaaggtttcgcatacctcttctacactgataagtctttgctctcaaagattgcaacggatagacttggagctattgaggagcattcagatcttggtcaaggttttcatgttgcagagaaggatatgggtatcagggggttcggaagcttgtttggtgagcaacaatctggagatgttgcaaatgttggcattgatctattctttgatatgctttttgatagcttgtcaaaggttgatcagttttgtcttattcccgtcccttacaaagatgttcagctggatataaacatttcttcacgtctctcctctgaatacataagttaccttgaaaatccggtggaattgcttaacgaagctgcaaaagctgcagagaaagacctatggaccttaatacaattcacagaagatcttcgtcgacaatatggaaaggagcctcgtgatatggagttgctattgaaaaagctctatgtaagacggatggcagcagatcttggtatcagtaggatatattcatctggcaaaatgatcatcatgaaaacaaacatgaacaagaaggtatttcggctcatgagagaagcaatgtctttggagactcatcgaaattccttatcattcactggaaaggaaattaagggtgaactacttgtcaatctgccggacactctactcctgaattggctttttcattgcttagcagactgctatgctgtaataccagcacttgtgaagtactag
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| Protein seq | MVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIKGELLVNLPDTLLLNWLFHCLADCYAVIPALVKY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.263205 | 0.085359 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g32880 | SBH | 15.125434 | 13.032321 | 0.732825 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016070 | RBH | 6.255123 | 0.000000 | 5.073376 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016010 | RBH | 2.482387 | 1.170946 | 5.075769 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015990 | RBH | 10.591526 | 0.0 | 13.996871 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015550 | SBH | 2.271677 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016010 | RBH | 67.850067 | 0.364839 | 12.347733 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0305400 | SBH | 32.8349115 | 14.657372 | 11.5304795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0016220 | RBH | 4.113990 | 0.213768 | 0.902050 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0313900 | SBH | 26.184244 | 27.6841925 | 23.304491 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0016160 | RBH | 6.230585 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015810 | RBH | 71.740250 | 9.900907 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0015580 | RBH | 6.987732 | 0.0 | 1.990257 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0015890 | RBH | 3.518232 | 1.214349 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015720 | RBH | 5.461777 | 0.525805 | 2.834062 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016070 | RBH | 17.146849 | 13.603613 | 9.884505 |
