Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0012610 | OGI:11040960 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:15299318-15301888 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcctattcccccccttccctctctctctatagacagacatccccgcaccgagaagagaggcgcgcgccccactttgttccgcgccgcgacgcgcacttcccgcctttgccgtcctcgcgccggcacgcgcgcacgcacgaacacacgaacgctcgcgtcgcgtcgcggagctcgaggcgtgttcccgcggcaatggcgcacgacgggttcctcggtggtggtggcggaagcttccacgcgctggcggcgtggccgctgccgttcgacgccgcggccgcgctgcacgggggagggtgggacagcgacccggcgctcggcgagctcgtgccgtcgccagtgggggtgggggtgcatgaggccgcgctgatggacgagctggcgagcaggctcggcggcgtgtgcggcggcgggctcgggggcggcggggtgccgtcgccgccgtcgtcgtcgcggtacgcgtcgtgctacagcacgccggtgggctcgccgtgcaagcctgcgccggcgccgcctgtgccttccctgctcgccgcggcggacgccatgatcgccgagcgcgccgcgcggatgtcgtgcctggcggctgccggacacggcggcgggaagctctcacgcgcggcgagcagccagtccctcctcgcggagccggcggcggccggtggcgtccaccagctgccggcgagcgacgggtcgagcagcgacgcccctagccggaagaggaaggcgccgggctccaaggctagaggcaaggacgcagcgacttccattgccaaggtacttcctctgctctctgcttcgcccctgcaatcgcaacgccgaaccagccctgaaacaatggtgaattttccacagtcgccggagccggggacgaaggccaagaaatgcaagctgtccgcggacgccgccggggacgaggacacgaagccggtcgccggcgacgcgggacacggcggcaatggcaagggaaaggttctcgacgccgccggcgagccacccaaggactacatccacgtgcgcgctcgccgcggccaggccaccgacagccacagcctcgccgagcgggtaaacaccgccggcgtctatgccgccattcacaattttgttttctcctcaattctcgcgtttgctgacgccattgccgccgtttttcacctccaggtgaggagagaaaagatcagcgagcgcatgaagctgcttcaagacctcgttcctggctgcaacaaggtggcaaaattcagccaaaaaaataaatttaaatttcacgccggtaaaacatttttcacagagtaattattaatttttcgagtttgttaaattcaggtgacaggcaaggcagtgatgcttgacgagatcataaactacgtccagtcgttgcaacggcaagtggaggtgcgttgtcatgatcatcaccgacttaatttacaataatttctgattaattcctttcaaatttgttaatttgagcaagattgtttactgtcccaacagttcctatcaatgaagctttccaccgtcaacccgcagctggatttcgacgtcgacaacttcatcccaaaagatgtaacaatccaacctgaattcgctctgtcatttagttagttggccttagaccaccatataattctgaaattttacttacaagtctctgaaTTTTCAGCAGGCTAATGATCCCAGCATGCCCGCGCCGTTGTCGCTGCCACCGCCACCGCCACCGCTATCCTACTCACCGGAGGGCGCAAGCCCGGGGATCTGCTACGCGTCGTCGCAAGGGACAGCAATGCAGAGCGTGGTGACAAGCACCAAACACTTAGAAACGGCGCCAACATTTGCAAACCACCATGTCATCCCAGTTCCCTCACTTGATGGGTTTCACAGTGCTCATTCTCAGGTAAAATTGTACTACAACTCAAGCCACAGAAATGATCATACCGCGAAATCGCCGTCATTTTCTCCGACCCACTGATCGTAAAACGCAAGAATTGTTGTGGCTGAAATTTTTTTCAGGCAGGGAGCTGCATGTGGGAGGATGACCTGCAGAGCGTGGTTCAGATGGGGTTCAGGGGCAATACATGATAGATTAGATAGATAGATAAACAGATGAGAGCCCCCAATCATGGCCATggtctctgaattgattcggggacaaatcagtttcaccaatcaaagccaggagacggtcacccggggaggcatgtcgggtgcttggaacacttaacacgaGggggttgggtttgagctacctccaacccaatcattggatcatccctccatgattgtacatacacacccccaccttcaatgtGggggaagaaaatggaagaaggagaagggataaaatgccctacttgcccattgcctcagctcaaagatttgtaccacggcgaggcggaggcggaggcggaggcgaaggcaaaggcgaagacgaaaaaagaaaaagatttagttttcttcatttgctcttaggaattttcatccatctcacaaaggatgcaatgtaatgttgcagtggaatgtaattgtttctagacttcaacttgggatttgaatataattatgagagaagtttcttgc
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| CDS seq | atggcgcacgacgggttcctcggtggtggtggcggaagcttccacgcgctggcggcgtggccgctgccgttcgacgccgcggccgcgctgcacgggggagggtgggacagcgacccggcgctcggcgagctcgtgccgtcgccagtgggggtgggggtgcatgaggccgcgctgatggacgagctggcgagcaggctcggcggcgtgtgcggcggcgggctcgggggcggcggggtgccgtcgccgccgtcgtcgtcgcggtacgcgtcgtgctacagcacgccggtgggctcgccgtgcaagcctgcgccggcgccgcctgtgccttccctgctcgccgcggcggacgccatgatcgccgagcgcgccgcgcggatgtcgtgcctggcggctgccggacacggcggcgggaagctctcacgcgcggcgagcagccagtccctcctcgcggagccggcggcggccggtggcgtccaccagctgccggcgagcgacgggtcgagcagcgacgcccctagccggaagaggaaggcgccgggctccaaggctagaggcaaggacgcagcgacttccattgccaaggtacttcctctgctctctgcttcgcccctgcaatcgcaacgccgaaccagccctgaaacaatggtgaattttccacagtcgccggagccggggacgaaggccaagaaatgcaagctgtccgcggacgccgccggggacgaggacacgaagccggtcgccggcgacgcgggacacggcggcaatggcaagggaaaggttctcgacgccgccggcgagccacccaaggactacatccacgtgcgcgctcgccgcggccaggccaccgacagccacagcctcgccgagcgggtaaacaccgccggcgtctatgccgccattcacaattttgttttctcctcaattctcgcgtttgctgacgccattgccgccgtttttcacctccaggtgaggagagaaaagatcagcgagcgcatgaagctgcttcaagacctcgttcctggctgcaacaaggtgacaggcaaggcagtgatgcttgacgagatcataaactacgtccagtcgttgcaacggcaagtggagttcctatcaatgaagctttccaccgtcaacccgcagctggatttcgacgtcgacaacttcatcccaaaagatCAGGCTAATGATCCCAGCATGCCCGCGCCGTTGTCGCTGCCACCGCCACCGCCACCGCTATCCTACTCACCGGAGGGCGCAAGCCCGGGGATCTGCTACGCGTCGTCGCAAGGGACAGCAATGCAGAGCGTGGTGACAAGCACCAAACACTTAGAAACGGCGCCAACATTTGCAAACCACCATGTCATCCCAGTTCCCTCACTTGATGGGTTTCACAGTGCTCATTCTCAGGCAGGGAGCTGCATGTGGGAGGATGACCTGCAGAGCGTGGTTCAGATGGGGTTCAGGGGCAATACATGA
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| Protein seq | MAHDGFLGGGGGSFHALAAWPLPFDAAAALHGGGWDSDPALGELVPSPVGVGVHEAALMDELASRLGGVCGGGLGGGGVPSPPSSSRYASCYSTPVGSPCKPAPAPPVPSLLAAADAMIAERAARMSCLAAAGHGGGKLSRAASSQSLLAEPAAAGGVHQLPASDGSSSDAPSRKRKAPGSKARGKDAATSIAKVLPLLSASPLQSQRRTSPETMVNFPQSPEPGTKAKKCKLSADAAGDEDTKPVAGDAGHGGNGKGKVLDAAGEPPKDYIHVRARRGQATDSHSLAERVNTAGVYAAIHNFVFSSILAFADAIAAVFHLQVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLSTVNPQLDFDVDNFIPKDQANDPSMPAPLSLPPPPPPLSYSPEGASPGICYASSQGTAMQSVVTSTKHLETAPTFANHHVIPVPSLDGFHSAHSQAGSCMWEDDLQSVVQMGFRGNT |
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| Function | Transcription factor bHLH62 [UniProtKB/Swiss-Prot:Q9SRT2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0012610 | OsLima_11g0012610.01 | Chr11 | 15299318 | 15301390 | + | NAM | ||
| CDS seq | atggcgcacgacgggttcctcggtggtggtggcggaagcttccacgcgctggcggcgtggccgctgccgttcgacgccgcggccgcgctgcacgggggagggtgggacagcgacccggcgctcggcgagctcgtgccgtcgccagtgggggtgggggtgcatgaggccgcgctgatggacgagctggcgagcaggctcggcggcgtgtgcggcggcgggctcgggggcggcggggtgccgtcgccgccgtcgtcgtcgcggtacgcgtcgtgctacagcacgccggtgggctcgccgtgcaagcctgcgccggcgccgcctgtgccttccctgctcgccgcggcggacgccatgatcgccgagcgcgccgcgcggatgtcgtgcctggcggctgccggacacggcggcgggaagctctcacgcgcggcgagcagccagtccctcctcgcggagccggcggcggccggtggcgtccaccagctgccggcgagcgacgggtcgagcagcgacgcccctagccggaagaggaaggcgccgggctccaaggctagaggcaaggacgcagcgacttccattgccaaggtacttcctctgctctctgcttcgcccctgcaatcgcaacgccgaaccagccctgaaacaatggtgaattttccacagtcgccggagccggggacgaaggccaagaaatgcaagctgtccgcggacgccgccggggacgaggacacgaagccggtcgccggcgacgcgggacacggcggcaatggcaagggaaaggttctcgacgccgccggcgagccacccaaggactacatccacgtgcgcgctcgccgcggccaggccaccgacagccacagcctcgccgagcgggtaaacaccgccggcgtctatgccgccattcacaattttgttttctcctcaattctcgcgtttgctgacgccattgccgccgtttttcacctccaggtgaggagagaaaagatcagcgagcgcatgaagctgcttcaagacctcgttcctggctgcaacaaggtgacaggcaaggcagtgatgcttgacgagatcataaactacgtccagtcgttgcaacggcaagtggagttcctatcaatgaagctttccaccgtcaacccgcagctggatttcgacgtcgacaacttcatcccaaaagatCAGGCTAATGATCCCAGCATGCCCGCGCCGTTGTCGCTGCCACCGCCACCGCCACCGCTATCCTACTCACCGGAGGGCGCAAGCCCGGGGATCTGCTACGCGTCGTCGCAAGGGACAGCAATGCAGAGCGTGGTGACAAGCACCAAACACTTAGAAACGGCGCCAACATTTGCAAACCACCATGTCATCCCAGTTCCCTCACTTGATGGGTTTCACAGTGCTCATTCTCAGGCAGGGAGCTGCATGTGGGAGGATGACCTGCAGAGCGTGGTTCAGATGGGGTTCAGGGGCAATACATGA
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| Protein seq | MAHDGFLGGGGGSFHALAAWPLPFDAAAALHGGGWDSDPALGELVPSPVGVGVHEAALMDELASRLGGVCGGGLGGGGVPSPPSSSRYASCYSTPVGSPCKPAPAPPVPSLLAAADAMIAERAARMSCLAAAGHGGGKLSRAASSQSLLAEPAAAGGVHQLPASDGSSSDAPSRKRKAPGSKARGKDAATSIAKVLPLLSASPLQSQRRTSPETMVNFPQSPEPGTKAKKCKLSADAAGDEDTKPVAGDAGHGGNGKGKVLDAAGEPPKDYIHVRARRGQATDSHSLAERVNTAGVYAAIHNFVFSSILAFADAIAAVFHLQVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLSTVNPQLDFDVDNFIPKDQANDPSMPAPLSLPPPPPPLSYSPEGASPGICYASSQGTAMQSVVTSTKHLETAPTFANHHVIPVPSLDGFHSAHSQAGSCMWEDDLQSVVQMGFRGNT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0012610 | OsLima_11g0012610.02 | Chr11 | 15300287 | 15301888 | + | IsoSeq | ||
| CDS seq | tctcgacgccgccggcgagccacccaaggactacatccacgtgcgcgctcgccgcggccaggccaccgacagccacagcctcgccgagcgggtgaggagagaaaagatcagcgagcgcatgaagctgcttcaagacctcgttcctggctgcaacaaggtgacaggcaaggcagtgat |
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| Protein seq | SRRRRRATQGLHPRARSPRPGHRQPQPRRAGEERKDQRAHEAASRPRSWLQQGDRQGSD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.074701 | 0.691561 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0442500 | RBH | 0.000000 | 0.000000 | 1.816165 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g25560 | RBH | 0.000000 | 0.225991 | 0.411825 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0442500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012730 | RBH | 0.0 | 20.040623 | 4.401248 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012540 | RBH | 0.0 | 9.055653 | 0.895667 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012670 | RBH | 0.000000 | 31.659222 | 5.267610 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0012410 | RBH | 0.0 | 0.694598 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012630 | RBH | 0.0 | 38.997807 | 0.739358 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0214300 | RBH | 8.0095955 | 13.599018 | 0.335504 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0012510 | RBH | 0.000000 | 2.953872 | 0.604930 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0228300 | RBH | 5.628216 | 4.428236 | 0.9398255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012740 | RBH | 0.328419 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0012360 | RBH | 0.0 | 42.128471 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012220 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012550 | RBH | 0.108135 | 23.102316 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G012400 | RBH | 0.143539 | 2.696439 | 5.281785 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0012480 | RBH | 0.000000 | 15.529077 | 4.891599 |
