Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0012430 | OGI:07060900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:14981206-14982831 | ||||||||
| Gene Symbol | RPL38, OsRPL38 | ||||||||||
| DNA seq | tccattctctctcgcctcctcgtcttctccacccctcgccgccgccgccgccgccgcctccgtcgtcttctgccgccgagcagcagcagcagttccttccaccatggtgagtttctccttccctcccctctctttccccgccgcgaagagaggatgcgattgaccccgtggtttggtttggttttggtcttgttgcagccgaagcagatccacgagatcaaggacttcctcctgacggcgaggaggaaggacgcgcggtcggtgcggatcaagaggaccaaggacgccgtcaagttcaaggtgcggtgctccaagtacctctacaccctctgcgtcttcgacgccgacaaggccaacaagctcaagcagtcgctccccccaggtccgtgcctacatttcatccacctttttcactattgactctgttctggtgcaagtggtggtggtaggactgtgtttgttgatgcgaactgttaaaatttgtttgcttctaggattataaaaaatggctggttgagacagtggtatggtatggttctgtatgtcctttgtaaaattcagtttggtctgacatgctaatctggtggaactggtgataaatgcccttccatttagattttagtctgcatttatggaaatcttagcaaccagtagttgcatataggccggaacttgcatcaggatgagattgagcagttgcaaccatcctccattgttcctgcttgtgcttgtacagcttattattgtttacttgtgatatattgagatgccagtatgtctggcctattgactcaaaagaaaatggcataatggatattaactaaaaaaattgtgtatcttgttattgtcatttcatttttacctgtcctggtcctaagaaaaccagcaaaagtaatcatagcactgggaataccagttcaatttcagattaaatatgctataaaactacctgccactaagcagaacactacaattgctgacctggtccaacagacaaaacccagcaccccaagtttatgtaactttttcaaaggattggtgcagcctaaagaccaGccaacttacaaccctgtaatacacacaattgagctgtctatagttcatcctgaatttatatatgttttttacattgctttctgtgctttactgtttttatcactgacacataaggtacaaaatttcttttgttgaattgaccagccattgttagctgttactgattgtgaatttcttttttcaggtttgactgtccaggaggtttaagcatcaagacagactatgctgttggtagcagcaggaatgtttgctccagttcgctttagtagctattagaaggtgaaatttatatgctgggttttgaatgtaacaccaaaAGtttgtgttgagccttgctgtttctccttgctggacttatctaccactcatattgtcccaaatagactgaattttgaatcatttctccctggttgctggagagtttcgtatttgttttgaactcaatttttacttctgaaattgtgttgacagagctgtaactgtttaccatttttgtgtggtgatggtggtggaatcagacaatcagttaggccttcaggttacttaacacctacccgggttgttctaatg
More
|
||||||||||
| CDS seq | atgccgaagcagatccacgagatcaaggacttcctcctgacggcgaggaggaaggacgcgcggtcggtgcggatcaagaggaccaaggacgccgtcaagttcaaggtgcggtgctccaagtacctctacaccctctgcgtcttcgacgccgacaaggccaacaagctcaagcagtcgctccccccaggtttgactgtccaggaggtttaa |
||||||||||
| Protein seq | MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGLTVQEV |
||||||||||
| Function | 60S ribosomal protein L38 [UniProtKB/Swiss-Prot:O22860] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0012430 | OsLima_11g0012430.01 | Chr11 | 14981206 | 14982735 | + | NAM | ||
| CDS seq | atgccgaagcagatccacgagatcaaggacttcctcctgacggcgaggaggaaggacgcgcggtcggtgcggatcaagaggaccaaggacgccgtcaagttcaaggtgcggtgctccaagtacctctacaccctctgcgtcttcgacgccgacaaggccaacaagctcaagcagtcgctccccccaggtttgactgtccaggaggtttaa
More
|
|||||||
| Protein seq | MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLPPGLTVQEV |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0012430 | OsLima_11g0012430.02 | Chr11 | 14982672 | 14982831 | + | IsoSeq | ||
| CDS seq | ttgctggagagtttcgtatttgttttgaactcaatttttacttctgaaattgtgttgacagag |
|||||||
| Protein seq | LLESFVFVLNSIFTSEIVLTE |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.763186 | 1.395061 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0433900 | RBH | 13.327335 | 15.762337 | 29.186968 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24610 | RBH | 2.230196 | 1.533693 | 1.739345 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0433900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012360 | RBH | 2.920617 | 43.108898 | 11.089609 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012370 | RBH | 0.576344 | 48.691322 | 9.587276 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012300 | RBH | 1.422009 | 72.575546 | 24.139656 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0012040 | RBH | 0.000000 | 5.589404 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012450 | RBH | 29.026598 | 258.109436 | 41.671608 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0210400 | RBH | 17.7435355 | 27.7384685 | 18.43489 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0012300 | RBH | 1.201393 | 13.573316 | 5.225462 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0366300 | SBH | 62.853041 | 98.9708025 | 160.976082 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0018270 | RBH | 1.806437 | 2.290336 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012550 | RBH | 1.138433 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0012160 | RBH | 3.507590 | 116.501747 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012020 | RBH | 0.739617 | 0.0 | 0.859104 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012350 | RBH | 0.367808 | 109.068764 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G012220 | RBH | 3.094874 | 66.225784 | 16.891279 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0012240 | RBH | 3.577733 | 71.524185 | 32.962498 |
