Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0012410 | OGI:11040090 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:14965539-14967840 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agccagcccgcatttcgccatttccccgcagcggaaaatatcccccaaatccctagctaaaccctcccctctctccccaatcgcctcgccgtgatccgtcgccgtcgccgccatggcgctctctaagccgctcctctcccgcctcctccctctccctctccctctccgcccccacctccgcctcctctgcctcgctaccgcaacccccaccccggccccaaccccggccgacgccgaccaggccaccccgaccgacgccgccgccgagcgccgccgccgcaagcgccgcctccgcgtggagccgcccagcgcacgcggcggtccggcgccgcagcgcgccccGggggcgccgcgcccggcgtccaaccccaacgcgcccaagctccccgagccggcctccgcgctctccggcaagcgcctcgacctccaccgccgcatcctcgcgctcgtccgcgaggacgacctcgacgaggccgcgctgctcacccgccactccatctactccaactgcaggcccacggtgttcacctgcaacgccgtcctcgccgcgctgctccgccaggcgcgctacgccgacctcctctcgctccaccgcttcgtcacgcaggcctccgtcgcgcccaccgtcgccacctacaacctcctcctccaggcctactgcgactgccgccgccccGacaccgcgctcgagcacttccgcctcctcctcaaggacgactcccccgtcctcccctcgcccaccacctaccgcatcctcgcccgctccctcgctgagaatgggaagcttgaacaggccatcgagctcaaagatgggatgctggagcgtggcctcgttgcccctgatccccaggtgtacgcccttgtcatgggtggctttgtcaacgccggggatggcgacacagtggtctctctgtacgaggagcttgttgagaagctcggcggtgggcagattcttgatgggatggtttatgggaacttaatgaaggggtacttcttgaagggtatggagaaagaggccatggattgctacgcggaggtgcttggggagggttcgaaggtgaggtttGgggctgtgagttacaacatggtgctcgatgcccttgggaggaatgggaagttggacgatgcgctccagctgtttgataggatgtgcgaggagcatgatccaccaaggaggattgctgtgaacctggggagctttaatgtcatggtggatgcatactgccgggctgaaaggttccaggatgcgattgaggtgtttggtaagatgggtgagaagaggtgtgctccggatgcactctcctacaataatctgattgactggcttgggaagaatgaacttgttggggaggcggaacaattgtacaaggagatgggtgagcgtggtgttaaccctgatgagtacacttatgtcttgctaattgagtcctactttaaggtggatagggtggatgactctgtttcttacttcaataagatgttcgttgctggcttgagacctaatgccaatgcatttaacaaagttattggtggcttggtgaaggttgataggcttgatgaggcacaggggttttttgataagatgccagAaaaggaagtcaagccaaatattggtagctatgagctgttgttGGgggcgtatattgatgctgcgaggttggatgatgcaattaagatggccaagtgtattcttttggatgagaGTgtGTTGTGTTTAGCGATGAATTAAAGGCACTTTTGGAAGGGGCACTACAGAAAGATGGGAGAGATGGGGATATGACGAAGTTGTATGAGGATGTTGAGAGGGAGAAAGCAGAGGCAGCTGCACGTGCAGCTGAAGAGAAGGCTAGAGCGGAGGCTTTAGCTAAAGAAGAAGAGGAGAGGAAGAAGGCCGAGGCAAAGGCCAAGGAGGAAGCTGCTGCCAGGGCTAGTCGAGCAGCAATTGAGGCAGTGCTTGGTCGCAAGAAGGAAGGTGAAAATGATGATTCAACTGTTAATGTTGAGGAGGCGCAGGTTGTTGAGTCCCATAGTGACACCAATGATATTACAGAAGAGAATGAAGGTGATGATCAGAAGAAATCTGGTGATGCCTTGCCATAGGTCAGACCTTTGTTTCGTTGTTCTATTCTCAGTTAATGGTTAGTTTTGTTTCAATAGTAGAATTCTATTTTAAGAGAGTATCTAGTAGATGGTTAACTTGATAATTTGAATGGAAAGTTATTCAAGTTGCTACTGATTGTATGCTGGAATCTTATGTGCCACATCGGTCATTTGGAGATAATCAGATAAATATATTTTTATC
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| CDS seq | atggcgctctctaagccgctcctctcccgcctcctccctctccctctccctctccgcccccacctccgcctcctctgcctcgctaccgcaacccccaccccggccccaaccccggccgacgccgaccaggccaccccgaccgacgccgccgccgagcgccgccgccgcaagcgccgcctccgcgtggagccgcccagcgcacgcggcggtccggcgccgcagcgcgccccGggggcgccgcgcccggcgtccaaccccaacgcgcccaagctccccgagccggcctccgcgctctccggcaagcgcctcgacctccaccgccgcatcctcgcgctcgtccgcgaggacgacctcgacgaggccgcgctgctcacccgccactccatctactccaactgcaggcccacggtgttcacctgcaacgccgtcctcgccgcgctgctccgccaggcgcgctacgccgacctcctctcgctccaccgcttcgtcacgcaggcctccgtcgcgcccaccgtcgccacctacaacctcctcctccaggcctactgcgactgccgccgccccGacaccgcgctcgagcacttccgcctcctcctcaaggacgactcccccgtcctcccctcgcccaccacctaccgcatcctcgcccgctccctcgctgagaatgggaagcttgaacaggccatcgagctcaaagatgggatgctggagcgtggcctcgttgcccctgatccccaggtgtacgcccttgtcatgggtggctttgtcaacgccggggatggcgacacagtggtctctctgtacgaggagcttgttgagaagctcggcggtgggcagattcttgatgggatggtttatgggaacttaatgaaggggtacttcttgaagggtatggagaaagaggccatggattgctacgcggaggtgcttggggagggttcgaaggtgaggtttGgggctgtgagttacaacatggtgctcgatgcccttgggaggaatgggaagttggacgatgcgctccagctgtttgataggatgtgcgaggagcatgatccaccaaggaggattgctgtgaacctggggagctttaatgtcatggtggatgcatactgccgggctgaaaggttccaggatgcgattgaggtgtttggtaagatgggtgagaagaggtgtgctccggatgcactctcctacaataatctgattgactggcttgggaagaatgaacttgttggggaggcggaacaattgtacaaggagatgggtgagcgtggtgttaaccctgatgaCGATGAATTAAAGGCACTTTTGGAAGGGGCACTACAGAAAGATGGGAGAGATGGGGATATGACGAAGTTGTATGAGGATGTTGAGAGGGAGAAAGCAGAGGCAGCTGCACGTGCAGCTGAAGAGAAGGCTAGAGCGGAGGCTTTAGCTAAAGAAGAAGAGGAGAGGAAGAAGGCCGAGGCAAAGGCCAAGGAGGAAGCTGCTGCCAGGGCTAGTCGAGCAGCAATTGAGGCAGTGCTTGGTCGCAAGAAGGAAGGTGAAAATGATGATTCAACTGTTAATGTTGAGGAGGCGCAGGTTGTTGAGTCCCATAGTGACACCAATGATATTACAGAAGAGAATGAAGGTGATGATCAGAAGAAATCTGGTGATGCCTTGCCATAG
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| Protein seq | MALSKPLLSRLLPLPLPLRPHLRLLCLATATPTPAPTPADADQATPTDAAAERRRRKRRLRVEPPSARGGPAPQRAPGAPRPASNPNAPKLPEPASALSGKRLDLHRRILALVREDDLDEAALLTRHSIYSNCRPTVFTCNAVLAALLRQARYADLLSLHRFVTQASVAPTVATYNLLLQAYCDCRRPDTALEHFRLLLKDDSPVLPSPTTYRILARSLAENGKLEQAIELKDGMLERGLVAPDPQVYALVMGGFVNAGDGDTVVSLYEELVEKLGGGQILDGMVYGNLMKGYFLKGMEKEAMDCYAEVLGEGSKVRFGAVSYNMVLDALGRNGKLDDALQLFDRMCEEHDPPRRIAVNLGSFNVMVDAYCRAERFQDAIEVFGKMGEKRCAPDALSYNNLIDWLGKNELVGEAEQLYKEMGERGVNPDDDELKALLEGALQKDGRDGDMTKLYEDVEREKAEAAARAAEEKARAEALAKEEEERKKAEAKAKEEAAARASRAAIEAVLGRKKEGENDDSTVNVEEAQVVESHSDTNDITEENEGDDQKKSGDALP |
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| Function | Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [UniProtKB/Swiss-Prot:Q9M3A8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0012410 | OsLima_11g0012410.01 | Chr11 | 14965539 | 14967638 | + | NAM | ||
| CDS seq | atggcgctctctaagccgctcctctcccgcctcctccctctccctctccctctccgcccccacctccgcctcctctgcctcgctaccgcaacccccaccccggccccaaccccggccgacgccgaccaggccaccccgaccgacgccgccgccgagcgccgccgccgcaagcgccgcctccgcgtggagccgcccagcgcacgcggcggtccggcgccgcagcgcgccccGggggcgccgcgcccggcgtccaaccccaacgcgcccaagctccccgagccggcctccgcgctctccggcaagcgcctcgacctccaccgccgcatcctcgcgctcgtccgcgaggacgacctcgacgaggccgcgctgctcacccgccactccatctactccaactgcaggcccacggtgttcacctgcaacgccgtcctcgccgcgctgctccgccaggcgcgctacgccgacctcctctcgctccaccgcttcgtcacgcaggcctccgtcgcgcccaccgtcgccacctacaacctcctcctccaggcctactgcgactgccgccgccccGacaccgcgctcgagcacttccgcctcctcctcaaggacgactcccccgtcctcccctcgcccaccacctaccgcatcctcgcccgctccctcgctgagaatgggaagcttgaacaggccatcgagctcaaagatgggatgctggagcgtggcctcgttgcccctgatccccaggtgtacgcccttgtcatgggtggctttgtcaacgccggggatggcgacacagtggtctctctgtacgaggagcttgttgagaagctcggcggtgggcagattcttgatgggatggtttatgggaacttaatgaaggggtacttcttgaagggtatggagaaagaggccatggattgctacgcggaggtgcttggggagggttcgaaggtgaggtttGgggctgtgagttacaacatggtgctcgatgcccttgggaggaatgggaagttggacgatgcgctccagctgtttgataggatgtgcgaggagcatgatccaccaaggaggattgctgtgaacctggggagctttaatgtcatggtggatgcatactgccgggctgaaaggttccaggatgcgattgaggtgtttggtaagatgggtgagaagaggtgtgctccggatgcactctcctacaataatctgattgactggcttgggaagaatgaacttgttggggaggcggaacaattgtacaaggagatgggtgagcgtggtgttaaccctgatgaCGATGAATTAAAGGCACTTTTGGAAGGGGCACTACAGAAAGATGGGAGAGATGGGGATATGACGAAGTTGTATGAGGATGTTGAGAGGGAGAAAGCAGAGGCAGCTGCACGTGCAGCTGAAGAGAAGGCTAGAGCGGAGGCTTTAGCTAAAGAAGAAGAGGAGAGGAAGAAGGCCGAGGCAAAGGCCAAGGAGGAAGCTGCTGCCAGGGCTAGTCGAGCAGCAATTGAGGCAGTGCTTGGTCGCAAGAAGGAAGGTGAAAATGATGATTCAACTGTTAATGTTGAGGAGGCGCAGGTTGTTGAGTCCCATAGTGACACCAATGATATTACAGAAGAGAATGAAGGTGATGATCAGAAGAAATCTGGTGATGCCTTGCCATAG
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| Protein seq | MALSKPLLSRLLPLPLPLRPHLRLLCLATATPTPAPTPADADQATPTDAAAERRRRKRRLRVEPPSARGGPAPQRAPGAPRPASNPNAPKLPEPASALSGKRLDLHRRILALVREDDLDEAALLTRHSIYSNCRPTVFTCNAVLAALLRQARYADLLSLHRFVTQASVAPTVATYNLLLQAYCDCRRPDTALEHFRLLLKDDSPVLPSPTTYRILARSLAENGKLEQAIELKDGMLERGLVAPDPQVYALVMGGFVNAGDGDTVVSLYEELVEKLGGGQILDGMVYGNLMKGYFLKGMEKEAMDCYAEVLGEGSKVRFGAVSYNMVLDALGRNGKLDDALQLFDRMCEEHDPPRRIAVNLGSFNVMVDAYCRAERFQDAIEVFGKMGEKRCAPDALSYNNLIDWLGKNELVGEAEQLYKEMGERGVNPDDDELKALLEGALQKDGRDGDMTKLYEDVEREKAEAAARAAEEKARAEALAKEEEERKKAEAKAKEEAAARASRAAIEAVLGRKKEGENDDSTVNVEEAQVVESHSDTNDITEENEGDDQKKSGDALP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0012410 | OsLima_11g0012410.02 | Chr11 | 14966417 | 14967840 | + | IsoSeq | ||
| CDS seq | ATGATGATTCAACTGTTAATGTTGAGGAGGCGCAGGTTGTTGAGTCCCATAGTGACACCAATGATATTACAGAAGAGAATGAAGGTGATGATCAGAAGAAATCTGGTGATGCCTTGCCATAGGTCAGACCTTTGTTTCGTTGTTCTATTCTCAGTTAAT |
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| Protein seq | MMIQLLMLRRRRLLSPIVTPMILQKRMKVMIRRNLVMPCHRSDLCFVVLFSVN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.720858 | 0.170659 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0433600 | RBH | 7.056573 | 9.959840 | 6.481880 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24570 | RBH | 3.630520 | 5.049619 | 1.240478 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0433600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012340 | RBH | 1.178035 | 3.938173 | 3.692568 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012350 | RBH | 0.228295 | 1.912685 | 3.789801 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012280 | RBH | 3.739389 | 7.739377 | 9.630216 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0012020 | RBH | 0.289859 | 0.244670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012430 | RBH | 10.831870 | 1.811698 | 7.050387 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0210100 | RBH | 1.7797695 | 1.1852875 | 0.5913005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0012290 | RBH | 0.739944 | 0.544495 | 0.790118 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0223600 | RBH | 3.78153 | 2.021012 | 6.8514135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012530 | RBH | 0.873482 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0012140 | RBH | 3.500647 | 4.722869 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012010 | RBH | 0.997853 | 0.0 | 0.785090 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012340 | RBH | 0.814579 | 5.440014 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G012200 | RBH | 0.896560 | 2.504534 | 1.844655 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0012220 | RBH | 1.685422 | 14.030765 | 6.416308 |
