Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0010450 | OGI:11028810 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:9947429-9948574 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctcataccatggatataggagaaagcaaaggcaaaggcaggggcaggggcaagggcaaatcaagcaaactagcagcgggtagggccaaacatataaattggccgcaagcactctctgagttcctccttgattggtacattgaaaagaagttacagctgccgccaaaagcagtgatcaagaagatacaccAcactgcttgcacatcagctataaatagcaagtatggcactacttacacggttgatcaagttcaacgccactacaggcgtcataaagaaaattggTCtctcgtagctcgtcatctaaatgaaagtggtaatggctgggatgagactactaaaatgctaactctctctcAagctactttggatgcactttcggtaattacttgtcctctagaatataactggtttattaacaccatttAgaagttcttgatgattttttcacttgcagataaatgatcgtggaattctttcgaagcCAATccaattctttgacaagctgcaagaattatttagtggttgcttggctgatggtgcattcatggaagatccttcaagtgctgctgattttgatgacgaagatgatgaagatgataaatttgattttctgaatgatatgtgaacctatgctgatacaaaagttccacaaggtgaggactctgataaattggagtcagacagtgatgattgcaaggaggtggcagcccttagtgcagctactagccaagtttcatcgtctactaattatgatttgaagccaaacaagaagaatttcaaaaggtgtgggaagccaaagacgttgccccaatcacataatgataagtgtaacaaaaaggcaaaatccacagctcaagtgcatgatagtgatgatgttgatgtgctgatcaacaataccttggttggaatcaaaaaCactcttaagaaaccaatacagacagttgcccctcaagatccaaatactcctctatgggacatgcttaagaagattgccttagaccctgatgacaaGttgagagtagggctgcacctttgtaagCCagagcttcaagctaaccgcagttttcttattagcatgggtcaagaataccttgagcgttggatctacaagtttctatctggtgatgatccaaatctcggctga
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| CDS seq | atggatataggagaaagcaaaggcaaaggcaggggcaggggcaagggcaaatcaagcaaactagcagcgggtagggccaaacatataaattggccgcaagcactctctgagttcctccttgattggtacattgaaaagaagttacagctgccgccaaaagcagtgatcaagaagatacaccAcactgcttgcacatcagctataaatagcaagtatggcactacttacacggttgatcaagttcaacgccactacaggcgtcataaagaaaattggTCtctcgtagctcgtcatctaaatgaaagtggtaatggctgggatgagactactaaaatgctaactctctctcAagctactttggatgcactttcgataaatgatcgtggaattctttcgaagcCAATccaattctttgacaagctgcaagaattatttagtggttgcttggctgatggtgcattcatggaagatccttcaagtgctgctgattttgatgacgaagatgatgaagatgataaatttgattttctgaatgatattgatgattgcaaggaggtggcagcccttagtgcagctactagccaagtttcatcgtctactaattatgatttgaagccaaacaagaagaatttcaaaaggtgtgggaagccaaagacgttgccccaatcacataatgataagtgtaacaaaaaggcaaaatccacagctcaagtgcatgatagtgatgatgttgatgtgctgatcaacaataccttggttggaatcaaaaaCactcttaagaaaccaatacagacagttgcccctcaagatccaaatactcctctatgggacatgcttaagaagattgccttagaccctgatgacaaGttgagagtagggctgcacctttgtaagCCagagcttcaagctaaccgcagttttcttattagcatgggtcaagaataccttgagcgttggatctacaagtttctatctggtgatgatccaaatctcggctga
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| Protein seq | MDIGESKGKGRGRGKGKSSKLAAGRAKHINWPQALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTSAINSKYGTTYTVDQVQRHYRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDALSINDRGILSKPIQFFDKLQELFSGCLADGAFMEDPSSAADFDDEDDEDDKFDFLNDIDDCKEVAALSAATSQVSSSTNYDLKPNKKNFKRCGKPKTLPQSHNDKCNKKAKSTAQVHDSDDVDVLINNTLVGIKNTLKKPIQTVAPQDPNTPLWDMLKKIALDPDDKLRVGLHLCKPELQANRSFLISMGQEYLERWIYKFLSGDDPNLG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0010450 | OsLima_11g0010450.01 | Chr11 | 9947429 | 9948574 | + | NAM | ||
| CDS seq | atggatataggagaaagcaaaggcaaaggcaggggcaggggcaagggcaaatcaagcaaactagcagcgggtagggccaaacatataaattggccgcaagcactctctgagttcctccttgattggtacattgaaaagaagttacagctgccgccaaaagcagtgatcaagaagatacaccAcactgcttgcacatcagctataaatagcaagtatggcactacttacacggttgatcaagttcaacgccactacaggcgtcataaagaaaattggTCtctcgtagctcgtcatctaaatgaaagtggtaatggctgggatgagactactaaaatgctaactctctctcAagctactttggatgcactttcgataaatgatcgtggaattctttcgaagcCAATccaattctttgacaagctgcaagaattatttagtggttgcttggctgatggtgcattcatggaagatccttcaagtgctgctgattttgatgacgaagatgatgaagatgataaatttgattttctgaatgatattgatgattgcaaggaggtggcagcccttagtgcagctactagccaagtttcatcgtctactaattatgatttgaagccaaacaagaagaatttcaaaaggtgtgggaagccaaagacgttgccccaatcacataatgataagtgtaacaaaaaggcaaaatccacagctcaagtgcatgatagtgatgatgttgatgtgctgatcaacaataccttggttggaatcaaaaaCactcttaagaaaccaatacagacagttgcccctcaagatccaaatactcctctatgggacatgcttaagaagattgccttagaccctgatgacaaGttgagagtagggctgcacctttgtaagCCagagcttcaagctaaccgcagttttcttattagcatgggtcaagaataccttgagcgttggatctacaagtttctatctggtgatgatccaaatctcggctga
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| Protein seq | MDIGESKGKGRGRGKGKSSKLAAGRAKHINWPQALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTSAINSKYGTTYTVDQVQRHYRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDALSINDRGILSKPIQFFDKLQELFSGCLADGAFMEDPSSAADFDDEDDEDDKFDFLNDIDDCKEVAALSAATSQVSSSTNYDLKPNKKNFKRCGKPKTLPQSHNDKCNKKAKSTAQVHDSDDVDVLINNTLVGIKNTLKKPIQTVAPQDPNTPLWDMLKKIALDPDDKLRVGLHLCKPELQANRSFLISMGQEYLERWIYKFLSGDDPNLG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0632200 | SBH | 0.619861 | 0.000000 | 3.164764 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11370 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0632200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021150 | SBH | 0.222954 | 19.453321 | 9.767479 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021080 | SBH | 0.101474 | 4.404009 | 3.885563 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020990 | SBH | 0.313702 | 7.866095 | 13.754075 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0010190 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0010440 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0152400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010360 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0153400 | RBH | 0.0070765 | 0 | 0.161946 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006800 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0010660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0010260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0067060 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0010330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G010410 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0010180 | RBH | 0.0 | 0.0 | 0.0 |
