Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0009720 | OGI:11025490 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:8876947-8880000 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcattctctgcccgacatgtccgtcccggatctgctgctgctgtcgtcgtgccggacagtctttataccatggcgatgctgcgatttgtcgtagaattccgatctgttcatacgttgaaagagatatcctgcttctccatcaaactccttggggtgcatatcagactcagagaaatacatatccgactcagagaaagactcggaaagacacatatcagactcagaaagagactcagagagatacacatcagactcggaaagatgtccctctccttcctcaaagtcctctcttagtagactgtaccaccatttgataccacagattctagggcagtagcgcaaaaccttaaaaaagtctacggtgatctcccgaaaggccagataattgagagtggtgacaaggaactcgatgccaagcgggacctcggtcatgcgacgaaggttgactagccttagttgttgcaggctagtcatggtgccttggtgtatatttagctgagtaagatgaggcatgtctcttaaactgagttccttgaggcttggaaaccacccttggaggaacaccagctgcactccgacgtacgctcttgtcaacactagtttcgtcatattcgaccaccgagacaaggatttgagcgggtcctcttcttgttgggaccaatatagaagcaccgaacataatgggtgattctgaccatctgctgttgctgcacccagcagcaagtctgcttgtgccaatcgtccacccaagcttagtgtttcaaggttcggaggcaaggggttcaggtcattcaagtggaggatctcctcctcatcacttgccatgatgcttaagttggatagaaattccatcttacgtagggactcgcacaggcattcacaatagcttcccttaacaccccatatcctgatacttcttatttgcctcaacgctcccaaacaccacacggatctttcaccccgcacttccactgcttgcagtgtgtgtagctctctcatctcctctaatcccctaggagtaggtacaccagatcgacaccggaattttctccaatatttatcattcactctttcagcaaacaagtgcctaagcttctttagcttaacgatccctctaggcagctcctatattttagatccttgaaggtccagcgtcactaagttggtgagcctctcgatactatctgggagtgacttcaccttggaattccgtaggcctagatgttggaggttgtacagaccaccaatagctcttggaaccttgtcaataggtagcccacttaactcaagtactgacatatattggcacttcgtcgctagagttaacagattataagatggcattctattgtcaaatgcaagcaaagtccgaaggtgatttgcgctggaaattgcttggcttgaatgattgtttagtctgtgtattaccattcgacgcccattcttctcctccagagaccccccatatttatcctcatcactatatgtgacaccaaagcactccctccggcacaaatctactgccaactcacgtatgatatcatgcattctgaatgattttatcctgcctaacgagttcctttcaacaagctgtaacatgttccactgaaccaattcattgatatactcttctgccacttcctccattgtacatatacccctcttctcaatgaacccttctgctatccataaccgcatgagcttctttcttttgaaaagatagtcctctggatacaagctacaatataggaagcaacttttcagatttgttggaaggtagatatagcttaagtaaaggatattcctgacatgctgcaggcttgggttattgattagctcccattcaagctggttatgaatgcgtctgaattcctttttgttcttgtcacgcacaaaaaggagcctgcccacagagacaattgcaagaggtatcccattgcacttgttaactatttgagcggcaagttgtgtcagttctgaggggcacccatatgttttcgctctagggaaagctgtcttacagaagagttcccatgacccattctttgttagacgctctagagttatccttttttctggtaaaacaaggtgagctacatcatcgttgcgtgttgtgactagtactctgcttcccttgtgattcggaacaagtgccattaacaagtgattgactgcttctggtgcccaaacatcatccagtatgaccaaatacctccggtcccttaggaacatcttcaattcatcttgaaggccttcaatgcccatgttttcaatgtttgatggagcatttgtttggtcatctctgaaaagttcaatgatcagacattttagaatgtccttaatagagtatgtctgagagatggagatccaggcgtggcattcaaacttttctctctggttcttgtacacattggctgctaaagctgttttaccgagacctcccatcccatgcaacactatcacctcgcattgcaactcatcacctgccagccactcgtggagaatttctctgttttcatccacccccacaagatcttgttcatcgagacaacgtgacatgctagctagatgtcgggacgtctcaaaaatgtgaccagagcattcaccactagtaaccatccaagcccatcgctctttggcctggaagaggtgcactagattggcctctgcctccttaaccgatgatgctatccttttcaatgatagtagaacactgggtctattgaatcctctcttcaggtaggtaccccatccttcttctttgtgggcaacaagatgcatgtagtcatccacaatatcctcgatgtgatggactagcattcttacttcctcgacccagatttcataatttctgttgttacgatggcgaatgtccattctggtaagaaattcgtgcatgagccggagttccctcctcatacgccccatactaccttgaagctcggtcagctgtgtgacaaattccttgaagaacgaagtagcttggttgattacctcgttccccagggcagttccaatctttttcacggctaaaagaatcagggtctcagccat
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| CDS seq | atggctgagaccctgattcttttagccgtgaaaaagattggaactgccctggggaacgaggtaatcaaccaagctacttcgttcttcaaggaatttgtcacacagctgaccgagcttcaaggtagtatggggcgtatgaggagggaactccggctcatgcacgaatttcttaccagaatggacattcgccatcgtaacaacagaaattatgaaatctgggtcgaggaagtaagaatgctagtccatcacatcgaggatattgtggatgactacatgcatcttgttgcccacaaagaagaaggatggggtacctacctgaagagaggattcaatagacccagtgttctactatcattgaaaaggatagcatcatcggttaaggaggcagaggccaatctagtgcacctcttccaggccaaagagcgatgggcttggatggttactagtggtgaatgctctggtcacatttttgagacgtcccgacatctagctagcatgtcacgttgtctcgatgaacaagatcttgtgggggtggatgaaaacagagaaattctccacgagtggctggcaggtgatgagttgcaatgcgaggtgatagtgttgcatgggatgggaggtctcggtaaaacagctttagcagccaatgtgtacaagaaccagagagaaaagtttgaatgccacgcctggatctccatctctcagacatactctattaaggacattctaaaatgtctgatcattgaacttttcagagatgaccaaacaaatgctccatcaaacattgaaaacatgggcattgaaggccttcaagatgaattgaagatgttcctaagggaccggaggtatttggtcatactggatgatgtttgggcaccagaagcagtcaatcacttgttaatggcacttgttccgaatcacaagggaagcagagtactagtcacaacacgcaacgatgatgtagctcaccttgttttaccagaaaaaaggataactctagagcgtctaacaaagaatgggtcatgggaactcttctgtaagacagctttccctagagcgaaaacatatgggtgcccctcagaactgacacaacttgccgctcaaatagttaacaagtgcaatgggatacctcttgcaattgtctctgtgggcaggctcctttttgtgcgtgacaagaacaaaaaggaattcagacgcattcataaccagcttgaatgggagctaatcaataacccaagcctgcagcatgtcaggaatatcctttacttaagctatatctaccttccaacaaatctgaaaagttgcttcctatattgtagcttgtatccagaggactatcttttcaaaagaaagaagctcatgcggttatggatagcagaagggttcattgagaagaggggtatatgtacaatggaggaagtggcagaagagtatatcaatgaattggttcagtggaacatgttacagcttgttgaaaggaactcgttaggcaggataaaatcattcagaatgcatgatatcatacgtgagttggcagtagatttgtgccggagggagtgctttggtgtcacatatagtgatgaggataaatatggggggtctctggaggagaagaatgggcgtcgaatggtaatacacagactaaacaatcattcaagccaagcaatttccagcgcaaatcaccttcggactttgcttgcatttgacaatagaatgccatcttataatctgttaactctagcgacgaagtgccaatatatgtcagtacttgagttaagtgggctacctattgacaaggttccaagagctattggtggtctgtacaacctccaacatctaggcctacggaattccaaggagctgcctagagggatcgttaagctaaagaagcttaggcacttgtttgctgaaagagtgaatgataaatattggagaaaattccggtgtcgatctggtgtacctactcctaggggattagaggagatgagagagctacacacactgcaagcagtggaagtgcggggtgaaagatccgtgtggtgtttgggagcgttgaggcaaataagaagtatcaggatatggggtgttaagggaagctattgtgaatgcctgtgcgagtccctacgtaagatggaatttctatccaacttaagcatcatggcaagtgatgaggaggagatcctccacttgaatgacctgaaccccttgcctccgaaccttgaaacactaagcttgggtggacgattggcacaagcagacttgctgctgggtgcagcaacagcagatggtcagaatcacccattatgttcggtgcttctatattggtcccaacaagaagaggacccgctcaaatccttgtctcggtggtcgaatatgacgaaactagtgttgacaagagcgtacgtcggagtgcagctggtgttcctccaagggtggtttccaagcctcaaggaactcagtttaagagacatgcctcatcttactcagctaaatatacaccaaggcaccatgactagcctgcaacaactaaggctagtcaaccttcgtcgcatgaccgaggtcccgcttggcatcgagttccttgtcaccactctcaattatctggcctttcgggagatcaccgtagacttttttaaggttttgcgctactgccctagaatctgtggtatcaaatggtggtacagtctactaagagaggactttgaggaaggagagggacatctttccgagtctgatgtgtatctctctgagtctctttctgagtctgatatgtgtctttccgagtctttctctgagtcggatatgtatttctctgagtctgatatgcaccccaaggagtttgatggagaagcaggatatctctttcaacgtatgaacagatcggaattctacgacaaatcgcagcatcgccatggtataaagactgtccggcacgacgacagcagcagcagatccgggacggacatgtcgggcagagaatga
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| Protein seq | MAETLILLAVKKIGTALGNEVINQATSFFKEFVTQLTELQGSMGRMRRELRLMHEFLTRMDIRHRNNRNYEIWVEEVRMLVHHIEDIVDDYMHLVAHKEEGWGTYLKRGFNRPSVLLSLKRIASSVKEAEANLVHLFQAKERWAWMVTSGECSGHIFETSRHLASMSRCLDEQDLVGVDENREILHEWLAGDELQCEVIVLHGMGGLGKTALAANVYKNQREKFECHAWISISQTYSIKDILKCLIIELFRDDQTNAPSNIENMGIEGLQDELKMFLRDRRYLVILDDVWAPEAVNHLLMALVPNHKGSRVLVTTRNDDVAHLVLPEKRITLERLTKNGSWELFCKTAFPRAKTYGCPSELTQLAAQIVNKCNGIPLAIVSVGRLLFVRDKNKKEFRRIHNQLEWELINNPSLQHVRNILYLSYIYLPTNLKSCFLYCSLYPEDYLFKRKKLMRLWIAEGFIEKRGICTMEEVAEEYINELVQWNMLQLVERNSLGRIKSFRMHDIIRELAVDLCRRECFGVTYSDEDKYGGSLEEKNGRRMVIHRLNNHSSQAISSANHLRTLLAFDNRMPSYNLLTLATKCQYMSVLELSGLPIDKVPRAIGGLYNLQHLGLRNSKELPRGIVKLKKLRHLFAERVNDKYWRKFRCRSGVPTPRGLEEMRELHTLQAVEVRGERSVWCLGALRQIRSIRIWGVKGSYCECLCESLRKMEFLSNLSIMASDEEEILHLNDLNPLPPNLETLSLGGRLAQADLLLGAATADGQNHPLCSVLLYWSQQEEDPLKSLSRWSNMTKLVLTRAYVGVQLVFLQGWFPSLKELSLRDMPHLTQLNIHQGTMTSLQQLRLVNLRRMTEVPLGIEFLVTTLNYLAFREITVDFFKVLRYCPRICGIKWWYSLLREDFEEGEGHLSESDVYLSESLSESDMCLSESFSESDMYFSESDMHPKEFDGEAGYLFQRMNRSEFYDKSQHRHGIKTVRHDDSSSRSGTDMSGRE |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0009720 | OsLima_11g0009720.01 | Chr11 | 8876947 | 8880000 | - | NAM | ||
| CDS seq | atggctgagaccctgattcttttagccgtgaaaaagattggaactgccctggggaacgaggtaatcaaccaagctacttcgttcttcaaggaatttgtcacacagctgaccgagcttcaaggtagtatggggcgtatgaggagggaactccggctcatgcacgaatttcttaccagaatggacattcgccatcgtaacaacagaaattatgaaatctgggtcgaggaagtaagaatgctagtccatcacatcgaggatattgtggatgactacatgcatcttgttgcccacaaagaagaaggatggggtacctacctgaagagaggattcaatagacccagtgttctactatcattgaaaaggatagcatcatcggttaaggaggcagaggccaatctagtgcacctcttccaggccaaagagcgatgggcttggatggttactagtggtgaatgctctggtcacatttttgagacgtcccgacatctagctagcatgtcacgttgtctcgatgaacaagatcttgtgggggtggatgaaaacagagaaattctccacgagtggctggcaggtgatgagttgcaatgcgaggtgatagtgttgcatgggatgggaggtctcggtaaaacagctttagcagccaatgtgtacaagaaccagagagaaaagtttgaatgccacgcctggatctccatctctcagacatactctattaaggacattctaaaatgtctgatcattgaacttttcagagatgaccaaacaaatgctccatcaaacattgaaaacatgggcattgaaggccttcaagatgaattgaagatgttcctaagggaccggaggtatttggtcatactggatgatgtttgggcaccagaagcagtcaatcacttgttaatggcacttgttccgaatcacaagggaagcagagtactagtcacaacacgcaacgatgatgtagctcaccttgttttaccagaaaaaaggataactctagagcgtctaacaaagaatgggtcatgggaactcttctgtaagacagctttccctagagcgaaaacatatgggtgcccctcagaactgacacaacttgccgctcaaatagttaacaagtgcaatgggatacctcttgcaattgtctctgtgggcaggctcctttttgtgcgtgacaagaacaaaaaggaattcagacgcattcataaccagcttgaatgggagctaatcaataacccaagcctgcagcatgtcaggaatatcctttacttaagctatatctaccttccaacaaatctgaaaagttgcttcctatattgtagcttgtatccagaggactatcttttcaaaagaaagaagctcatgcggttatggatagcagaagggttcattgagaagaggggtatatgtacaatggaggaagtggcagaagagtatatcaatgaattggttcagtggaacatgttacagcttgttgaaaggaactcgttaggcaggataaaatcattcagaatgcatgatatcatacgtgagttggcagtagatttgtgccggagggagtgctttggtgtcacatatagtgatgaggataaatatggggggtctctggaggagaagaatgggcgtcgaatggtaatacacagactaaacaatcattcaagccaagcaatttccagcgcaaatcaccttcggactttgcttgcatttgacaatagaatgccatcttataatctgttaactctagcgacgaagtgccaatatatgtcagtacttgagttaagtgggctacctattgacaaggttccaagagctattggtggtctgtacaacctccaacatctaggcctacggaattccaaggagctgcctagagggatcgttaagctaaagaagcttaggcacttgtttgctgaaagagtgaatgataaatattggagaaaattccggtgtcgatctggtgtacctactcctaggggattagaggagatgagagagctacacacactgcaagcagtggaagtgcggggtgaaagatccgtgtggtgtttgggagcgttgaggcaaataagaagtatcaggatatggggtgttaagggaagctattgtgaatgcctgtgcgagtccctacgtaagatggaatttctatccaacttaagcatcatggcaagtgatgaggaggagatcctccacttgaatgacctgaaccccttgcctccgaaccttgaaacactaagcttgggtggacgattggcacaagcagacttgctgctgggtgcagcaacagcagatggtcagaatcacccattatgttcggtgcttctatattggtcccaacaagaagaggacccgctcaaatccttgtctcggtggtcgaatatgacgaaactagtgttgacaagagcgtacgtcggagtgcagctggtgttcctccaagggtggtttccaagcctcaaggaactcagtttaagagacatgcctcatcttactcagctaaatatacaccaaggcaccatgactagcctgcaacaactaaggctagtcaaccttcgtcgcatgaccgaggtcccgcttggcatcgagttccttgtcaccactctcaattatctggcctttcgggagatcaccgtagacttttttaaggttttgcgctactgccctagaatctgtggtatcaaatggtggtacagtctactaagagaggactttgaggaaggagagggacatctttccgagtctgatgtgtatctctctgagtctctttctgagtctgatatgtgtctttccgagtctttctctgagtcggatatgtatttctctgagtctgatatgcaccccaaggagtttgatggagaagcaggatatctctttcaacgtatgaacagatcggaattctacgacaaatcgcagcatcgccatggtataaagactgtccggcacgacgacagcagcagcagatccgggacggacatgtcgggcagagaatga
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| Protein seq | MAETLILLAVKKIGTALGNEVINQATSFFKEFVTQLTELQGSMGRMRRELRLMHEFLTRMDIRHRNNRNYEIWVEEVRMLVHHIEDIVDDYMHLVAHKEEGWGTYLKRGFNRPSVLLSLKRIASSVKEAEANLVHLFQAKERWAWMVTSGECSGHIFETSRHLASMSRCLDEQDLVGVDENREILHEWLAGDELQCEVIVLHGMGGLGKTALAANVYKNQREKFECHAWISISQTYSIKDILKCLIIELFRDDQTNAPSNIENMGIEGLQDELKMFLRDRRYLVILDDVWAPEAVNHLLMALVPNHKGSRVLVTTRNDDVAHLVLPEKRITLERLTKNGSWELFCKTAFPRAKTYGCPSELTQLAAQIVNKCNGIPLAIVSVGRLLFVRDKNKKEFRRIHNQLEWELINNPSLQHVRNILYLSYIYLPTNLKSCFLYCSLYPEDYLFKRKKLMRLWIAEGFIEKRGICTMEEVAEEYINELVQWNMLQLVERNSLGRIKSFRMHDIIRELAVDLCRRECFGVTYSDEDKYGGSLEEKNGRRMVIHRLNNHSSQAISSANHLRTLLAFDNRMPSYNLLTLATKCQYMSVLELSGLPIDKVPRAIGGLYNLQHLGLRNSKELPRGIVKLKKLRHLFAERVNDKYWRKFRCRSGVPTPRGLEEMRELHTLQAVEVRGERSVWCLGALRQIRSIRIWGVKGSYCECLCESLRKMEFLSNLSIMASDEEEILHLNDLNPLPPNLETLSLGGRLAQADLLLGAATADGQNHPLCSVLLYWSQQEEDPLKSLSRWSNMTKLVLTRAYVGVQLVFLQGWFPSLKELSLRDMPHLTQLNIHQGTMTSLQQLRLVNLRRMTEVPLGIEFLVTTLNYLAFREITVDFFKVLRYCPRICGIKWWYSLLREDFEEGEGHLSESDVYLSESLSESDMCLSESFSESDMYFSESDMHPKEFDGEAGYLFQRMNRSEFYDKSQHRHGIKTVRHDDSSSRSGTDMSGRE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.460730 | 0.566050 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0678400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12240 | SBH | 0.091148 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0678400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017520 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017580 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017460 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017080 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009530 | RBH | 10.778900 | 6.410890 | 3.863543 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0133700 | RBH | 1.1607615 | 11.616953 | 0.0550245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009620 | RBH | 0.110836 | 0.038996 | 0.256890 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0138000 | RBH | 4.008776 | 25.223334 | 0.011889 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009720 | RBH | 0.537263 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009610 | RBH | 14.395302 | 33.128448 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009490 | RBH | 1.337188 | 0.0 | 0.648964 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009630 | RBH | 0.327838 | 8.634467 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008050 | SBH | 0.057875 | 0.0 | 0.130986 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009550 | RBH | 5.953640 | 66.344688 | 13.155694 |
