Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0008680 | OGI:11022400 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:7718083-7719105 | ||||||||
| Gene Symbol | OsZHD4 | ||||||||||
| DNA seq | tcactccagcttgagctggggcggcgagggcggcatcggcatcggcattggcggcggcgagggcggcatggacatgggaggaatctgcggcggcggcggcggcgaggaggggagcggcttcttggcgaggttgtgcttgttgttgtgcatccagaccttgaggacgcggcgcttgacgccgatctcctggcagaagtggtgcaccatggcgtcgtcgagcttctggaggcgccaccccacgcgctccgcgaactccagcatccgcgccttctgctccgccgtgaacttggtgcggaaccgcttcttcgacgacgacgacgacccgccgccgcgtcccccgccgccgccgccgccgctgacgtccatctcgtcggactccgacgtgtggatcatgttgagcggcatgatgatctggtggtggtggtggtggccgtgcggcggcggcggcggcggtggcgggagcgcgcgcgccgcggcgtaggcggcgccgtaggggtcgccgccggcgacgaggaggccgccgccgttcttgtggtggtggtgcggcagggcggggccgaggaggtggtggtggcggccggcggcggcgcggagggcggcggcgcagctgtcggcgtcgaggtcgtcggcctccttgcggtggaaattgcggtggcagccgcaggccgagcacttgagcgcctccagcgagccctcctcgccgctgggcatgaactcgccgcacccgtcggtggcgttgccgccgatggccgccgcgtggttcttcaagcactccctgtacttcaccgccaccccaccaccaccacccaccaccgccatgccgccccgcttcttccccgccaccggcgagccctcctgctccgccgccaccgcaacattcgtcggcggcggtgacgccatcgccatggcctgcccattgttacccacatgctcatggcggtgaagctccacgacatgtccaccgcctgcgccgccgtgcgcgcccatgccggcgaatggcgacgcggcggtggaggcgtgcat
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| CDS seq | atgcacgcctccaccgccgcgtcgccattcgccggcatgggcgcgcacggcggcgcaggcggtggacatgtcgtggagcttcaccgccatgagcatgtgggtaacaatgggcaggccatggcgatggcgtcaccgccgccgacgaatgttgcggtggcggcggagcaggagggctcgccggtggcggggaagaagcggggcggcatggcggtggtgggtggtggtggtggggtggcggtgaagtacagggagtgcttgaagaaccacgcggcggccatcggcggcaacgccaccgacgggtgcggcgagttcatgcccagcggcgaggagggctcgctggaggcgctcaagtgctcggcctgcggctgccaccgcaatttccaccgcaaggaggccgacgacctcgacgccgacagctgcgccgccgccctccgcgccgccgccggccgccaccaccacctcctcggccccgccctgccgcaccaccaccacaagaacggcggcggcctcctcgtcgccggcggcgacccctacggcgccgcctacgccgcggcgcgcgcgctcccgccaccgccgccgccgccgccgcacggccaccaccaccaccaccagatcatcatgccgctcaacatgatccacacgtcggagtccgacgagatggacgtcagcggcggcggcggcggcgggggacgcggcggcgggtcgtcgtcgtcgtcgaagaagcggttccgcaccaagttcacggcggagcagaaggcgcggatgctggagttcgcggagcgcgtggggtggcgcctccagaagctcgacgacgccatggtgcaccacttctgccaggagatcggcgtcaagcgccgcgtcctcaaggtctggatgcacaacaacaagcacaacctcgccaagaagccgctcccctcctcgccgccgccgccgccgcagattcctcccatgtccatgccgccctcgccgccgccaatgccgatgccgatgccgccctcgccgccccagctcaagctggagtga
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| Protein seq | MHASTAASPFAGMGAHGGAGGGHVVELHRHEHVGNNGQAMAMASPPPTNVAVAAEQEGSPVAGKKRGGMAVVGGGGGVAVKYRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKEADDLDADSCAAALRAAAGRHHHLLGPALPHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMPLNMIHTSESDEMDVSGGGGGGGRGGGSSSSSKKRFRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLKVWMHNNKHNLAKKPLPSSPPPPPQIPPMSMPPSPPPMPMPMPPSPPQLKLE |
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| Function | Zinc-finger homeodomain protein 4 [UniProtKB/Swiss-Prot:Q53N87] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0008680 | OsLima_11g0008680.01 | Chr11 | 7718083 | 7719105 | - | NAM | ||
| CDS seq | atgcacgcctccaccgccgcgtcgccattcgccggcatgggcgcgcacggcggcgcaggcggtggacatgtcgtggagcttcaccgccatgagcatgtgggtaacaatgggcaggccatggcgatggcgtcaccgccgccgacgaatgttgcggtggcggcggagcaggagggctcgccggtggcggggaagaagcggggcggcatggcggtggtgggtggtggtggtggggtggcggtgaagtacagggagtgcttgaagaaccacgcggcggccatcggcggcaacgccaccgacgggtgcggcgagttcatgcccagcggcgaggagggctcgctggaggcgctcaagtgctcggcctgcggctgccaccgcaatttccaccgcaaggaggccgacgacctcgacgccgacagctgcgccgccgccctccgcgccgccgccggccgccaccaccacctcctcggccccgccctgccgcaccaccaccacaagaacggcggcggcctcctcgtcgccggcggcgacccctacggcgccgcctacgccgcggcgcgcgcgctcccgccaccgccgccgccgccgccgcacggccaccaccaccaccaccagatcatcatgccgctcaacatgatccacacgtcggagtccgacgagatggacgtcagcggcggcggcggcggcgggggacgcggcggcgggtcgtcgtcgtcgtcgaagaagcggttccgcaccaagttcacggcggagcagaaggcgcggatgctggagttcgcggagcgcgtggggtggcgcctccagaagctcgacgacgccatggtgcaccacttctgccaggagatcggcgtcaagcgccgcgtcctcaaggtctggatgcacaacaacaagcacaacctcgccaagaagccgctcccctcctcgccgccgccgccgccgcagattcctcccatgtccatgccgccctcgccgccgccaatgccgatgccgatgccgccctcgccgccccagctcaagctggagtga
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| Protein seq | MHASTAASPFAGMGAHGGAGGGHVVELHRHEHVGNNGQAMAMASPPPTNVAVAAEQEGSPVAGKKRGGMAVVGGGGGVAVKYRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKEADDLDADSCAAALRAAAGRHHHLLGPALPHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMPLNMIHTSESDEMDVSGGGGGGGRGGGSSSSSKKRFRTKFTAEQKARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLKVWMHNNKHNLAKKPLPSSPPPPPQIPPMSMPPSPPPMPMPMPPSPPQLKLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.080982 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0243300 | RBH | 0.113292 | 0.000000 | 0.496950 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13930 | RBH | 0.072445 | 0.000000 | 0.120965 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0243300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008780 | RBH | 0.0 | 0.0 | 1.382807 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008670 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008650 | RBH | 0.000000 | 0.0 | 0.446184 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008590 | RBH | 0.0 | 0.0 | 1.711397 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0117000 | RBH | 2.5100575 | 0.0514395 | 9.804948 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008620 | RBH | 0.0 | 0.0 | 0.082388 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0121300 | RBH | 1.824835 | 0.030401 | 27.7612895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006480 | RBH | 0.094677 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008690 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008540 | RBH | 0.000000 | 0.0 | 0.123627 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008690 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008730 | RBH | 0.0 | 0.0 | 0.752263 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008610 | RBH | 0.0 | 0.0 | 0.669150 |
