Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0008460 | OGI:11021730 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:7406474-7409641 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcacgagctagcctacgacatggaggatatcatagatctcttcacctaccgcattgatcatgagccagccagtaccacagtaggagtcaagagaatcatccttaagatccttcgcaaagtaaggaagattcaccatcaacacaagtttgctaagcagatgcatcaacttcaagttcttgtaaatgaagcatacaaacagcaaaagagatacaggctcgaagaaggcatctctagcaagccacacacagagattgatcctcggttgccagcgctctatgtcgaggtcgaaaaactcgtgggcgtcgaaggcccaagcaaggaaattatggaacagttaattggtgagaagcctacaaggcagcatagggtcgtgtccgctgtcggatctagaggttcaagcaagacaaccctcgtgaaacaggtgtatgagaggatcaaaggtcaattctcttgttcagcgtttttgtctgtatctcaaaagcctaacataaataaccttctgagggagttgctatctcgaatttgggacggaagtggaagttcaggagcaacagaactatatagtgatgaacaactcatcgacaagctaagagcatgtcttgataatgaaaggttagtatacttgactggtttttcagtgtgccattacataatggcacaataataacaacattgcacacaccatcaagattaggttgacgttgtatgtgtagttatttggagtagccatacccataacttgttttattgaaaaaatagttgaagtagtgtttcatgaaactcaagtttttttttcaaacatgattttattttatctttaggcacttaatcatgtttaacacaatgtcgttggtaataattgggactcaaaagactgttttccacaaagcaaagtccatgtcaaatcaactatatatctatctatttctcaaaaaacagtaacgtcattgttctatcaataataataatatccagggaggtgtaattaactagatacatgagagtgcagatagtttacatgggaatcggattttgattttgtatatagcaagaatccacatgctaatgtttttttaataaaaatgtctaggggttgttacagaaaacaaacaaataaggaactgaactttctggtatttggattttaataaatacttgtagcatttgttaattaatgcaaaaatgatttatgctctgcttcacaaatttttgcctataggtatcttgttgtgattgatgacatttggcaaaggtccgcatgggaaacaatacattgtgctcttcctaaaaacaaccatgcaagtagaataatcataacgacacgcatcaaaagtgttgctcaattctgtacttcagctgagggctttgtttatcaaatgaaacctcttaacaaaagtgactctgaaagtttatttctcagaaggacttttggtgctgaagaaaactgccccagtcaactggagggggttatcaataagatactttacagatgtgatggtttgccattggccattattactttagcaagcttgttagctgataaaccaagaagagaggaggaatgggaaagagttctaaaatatatgggatctatgcccaaaaaggacagcgagctggaggtaatggataagatattgtctttgagttacaatgatctacctcaccatatgaaaaactgcttcctgtacctcggtacttttccagaggatcatgacatcggtaaagatattttggtatggaaatggatagctgaagggttcattgttgcaaagcaaggttttactttggaggaaattgcagaaagttacttttatgagctgataaataggagtttggttcaacctgtaaatatgcttcatggggtaagtgagcatggatgccgagtccatgatatagtactcagtttcatcatctctcggtcaactgaagaaaatattttcacgatgttggacgatcaggaactcccatcttcaaagacaaggattcgacgtctctctgtttggaacaagcaacaatatcctacgttcatatcacaagaaagcatgaagttgtcccatgtccgtgcaattagtatatgccatgtagatggctggacgattcctccagatttggacctacctgttcttcgagtgttagatctagagggttgtagtgctttgaggaatgctcatctcgattgcattccaagtttatttcatcttagatatctagggttatctaggacaagcattgatagtctaccagcccaaattggtaagttggaatatttgcagacgctcgatgtacgctcaactctagtgagacgactgccagaaagtattcttcacccaaagagattgatgcgccttgttggtgatgaactcatactgctggatgggtttggcaacatggaatcccttcaagagttgggtattgttgatggatgcaactgctctataagttttgggaatgatctaggacttctgagcaagctaagggttcttcgagtaatgttcaagtgtgaagactctagcgatctggacactagaaagaaatctttgatgtcatccctctgcaaacttggaggtaacagccttcggtcactctatattaagagctctattactggtgccgattgttccgcggattcatggtgcccttctccaattctcctccaaaagtttgagtacaaaggtgtacgctacttctccagctttccaaagtggatcaagcccttgcttgtcgatctcgcgtacctggatttcaggattgagcgaatggaaggggaagatctatgtgttcttgaaagtttgcctgcacttactgtcctatgtctaacagtaaagcatgtttctgaagatggactcatgatcagtcatggtgcattccaatgtctaagacggcttgaattttgtaatacagatggacctggtctgatgtttgaagtagatatgccaaggcttgagtggcttaaacttgaattcaatgctgataaagcacaatcaacgtatggaagttttgcggtaggtaccagcacttgtcctctctcaaacttattgatctcactgttgggatggtctcatctgaagacgaaaatgagcatgcgagggagaccatcaggtctgttatcagtgaccacgtcaagatgctttcttataaccccaaggttaacatcacatttttgtaa
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| CDS seq | atgcacgagctagcctacgacatggaggatatcatagatctcttcacctaccgcattgatcatgagccagccagtaccacagtaggagtcaagagaatcatccttaagatccttcgcaaagtaaggaagattcaccatcaacacaagtttgctaagcagatgcatcaacttcaagttcttgtaaatgaagcatacaaacagcaaaagagatacaggctcgaagaaggcatctctagcaagccacacacagagattgatcctcggttgccagcgctctatgtcgaggtcgaaaaactcgtgggcgtcgaaggcccaagcaaggaaattatggaacagttaattggtgagaagcctacaaggcagcatagggtcgtgtccgctgtcggatctagaggttcaagcaagacaaccctcgtgaaacaggtgtatgagaggatcaaaggtcaattctcttgttcagcgtttttgtctgtatctcaaaagcctaacataaataaccttctgagggagttgctatctcgaatttgggacggaagtggaagttcaggagcaacagaactatatagtgatgaacaactcatcgacaagctaagagcatgtcttgataatgaaaggtatcttgttgtgattgatgacatttggcaaaggtccgcatgggaaacaatacattgtgctcttcctaaaaacaaccatgcaagtagaataatcataacgacacgcatcaaaagtgttgctcaattctgtacttcagctgagggctttgtttatcaaatgaaacctcttaacaaaagtgactctgaaagtttatttctcagaaggacttttggtgctgaagaaaactgccccagtcaactggagggggttatcaataagatactttacagatgtgatggtttgccattggccattattactttagcaagcttgttagctgataaaccaagaagagaggaggaatgggaaagagttctaaaatatatgggatctatgcccaaaaaggacagcgagctggaggtaatggataagatattgtctttgagttacaatgatctacctcaccatatgaaaaactgcttcctgtacctcggtacttttccagaggatcatgacatcggtaaagatattttggtatggaaatggatagctgaagggttcattgttgcaaagcaaggttttactttggaggaaattgcagaaagttacttttatgagctgataaataggagtttggttcaacctgtaaatatgcttcatggggtaagtgagcatggatgccgagtccatgatatagtactcagtttcatcatctctcggtcaactgaagaaaatattttcacgatgttggacgatcaggaactcccatcttcaaagacaaggattcgacgtctctctgtttggaacaagcaacaatatcctacgttcatatcacaagaaagcatgaagttgtcccatgtccgtgcaattagtatatgccatgtagatggctggacgattcctccagatttggacctacctgttcttcgaggttatctaggacaagcattgatagtctaccagcccaaattgacgctcgatgtacgctcaactctagtgagacgactgccagaaagtattcttcacccaaagagattgatgcgccttgttggtgatgaactcatactgctggatgggtttggcaacatggaatcccttcaagagttgggtattgttgatggatgcaactgctctataagttttgggaatgatctaggacttctgagcaagctaagggttcttcgagtaatgttcaagtgtgaagactctagcgatctggacactagaaagaaatctttgatgtcatccctctgcaaacttggaggtaacagccttcggtcactctatattaagagctctattactggtgccgattgttccgcggattcatggtgcccttctccaattctcctccaaaagtttgagtacaaaggtgtacgctacttctccagctttccaaagtggatcaagcccttgcttgtcgatctcgcgtacctggatttcaggattgagcgaatggaaggggaagatctatgtgttcttgaaagtttgcctgcacttactgtcctatgtctaacagtaaagcatgtttctgaagatggactcatgatcagtcatggtgcattccaatgtctaagacggcttgaattttgtaatacagatggacctggtctgatgtttgaagtagatatgccaaggcttgagtggcttaaacttgaattcaatgctgataaagcacaatcaacgtaccagcacttgtcctctctcaaacttattgatctcactgttgggatggtctcatctgaagacgaaaatgagcatgcgagggagaccatcaggtctgttatcagtgaccacgtcaagatgctttcttataaccccaaggttaacatcacatttttgtaa
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| Protein seq | MHELAYDMEDIIDLFTYRIDHEPASTTVGVKRIILKILRKVRKIHHQHKFAKQMHQLQVLVNEAYKQQKRYRLEEGISSKPHTEIDPRLPALYVEVEKLVGVEGPSKEIMEQLIGEKPTRQHRVVSAVGSRGSSKTTLVKQVYERIKGQFSCSAFLSVSQKPNINNLLRELLSRIWDGSGSSGATELYSDEQLIDKLRACLDNERYLVVIDDIWQRSAWETIHCALPKNNHASRIIITTRIKSVAQFCTSAEGFVYQMKPLNKSDSESLFLRRTFGAEENCPSQLEGVINKILYRCDGLPLAIITLASLLADKPRREEEWERVLKYMGSMPKKDSELEVMDKILSLSYNDLPHHMKNCFLYLGTFPEDHDIGKDILVWKWIAEGFIVAKQGFTLEEIAESYFYELINRSLVQPVNMLHGVSEHGCRVHDIVLSFIISRSTEENIFTMLDDQELPSSKTRIRRLSVWNKQQYPTFISQESMKLSHVRAISICHVDGWTIPPDLDLPVLRGYLGQALIVYQPKLTLDVRSTLVRRLPESILHPKRLMRLVGDELILLDGFGNMESLQELGIVDGCNCSISFGNDLGLLSKLRVLRVMFKCEDSSDLDTRKKSLMSSLCKLGGNSLRSLYIKSSITGADCSADSWCPSPILLQKFEYKGVRYFSSFPKWIKPLLVDLAYLDFRIERMEGEDLCVLESLPALTVLCLTVKHVSEDGLMISHGAFQCLRRLEFCNTDGPGLMFEVDMPRLEWLKLEFNADKAQSTYQHLSSLKLIDLTVGMVSSEDENEHARETIRSVISDHVKMLSYNPKVNITFL |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0008460 | OsLima_11g0008460.01 | Chr11 | 7406474 | 7409641 | + | NAM | ||
| CDS seq | atgcacgagctagcctacgacatggaggatatcatagatctcttcacctaccgcattgatcatgagccagccagtaccacagtaggagtcaagagaatcatccttaagatccttcgcaaagtaaggaagattcaccatcaacacaagtttgctaagcagatgcatcaacttcaagttcttgtaaatgaagcatacaaacagcaaaagagatacaggctcgaagaaggcatctctagcaagccacacacagagattgatcctcggttgccagcgctctatgtcgaggtcgaaaaactcgtgggcgtcgaaggcccaagcaaggaaattatggaacagttaattggtgagaagcctacaaggcagcatagggtcgtgtccgctgtcggatctagaggttcaagcaagacaaccctcgtgaaacaggtgtatgagaggatcaaaggtcaattctcttgttcagcgtttttgtctgtatctcaaaagcctaacataaataaccttctgagggagttgctatctcgaatttgggacggaagtggaagttcaggagcaacagaactatatagtgatgaacaactcatcgacaagctaagagcatgtcttgataatgaaaggtatcttgttgtgattgatgacatttggcaaaggtccgcatgggaaacaatacattgtgctcttcctaaaaacaaccatgcaagtagaataatcataacgacacgcatcaaaagtgttgctcaattctgtacttcagctgagggctttgtttatcaaatgaaacctcttaacaaaagtgactctgaaagtttatttctcagaaggacttttggtgctgaagaaaactgccccagtcaactggagggggttatcaataagatactttacagatgtgatggtttgccattggccattattactttagcaagcttgttagctgataaaccaagaagagaggaggaatgggaaagagttctaaaatatatgggatctatgcccaaaaaggacagcgagctggaggtaatggataagatattgtctttgagttacaatgatctacctcaccatatgaaaaactgcttcctgtacctcggtacttttccagaggatcatgacatcggtaaagatattttggtatggaaatggatagctgaagggttcattgttgcaaagcaaggttttactttggaggaaattgcagaaagttacttttatgagctgataaataggagtttggttcaacctgtaaatatgcttcatggggtaagtgagcatggatgccgagtccatgatatagtactcagtttcatcatctctcggtcaactgaagaaaatattttcacgatgttggacgatcaggaactcccatcttcaaagacaaggattcgacgtctctctgtttggaacaagcaacaatatcctacgttcatatcacaagaaagcatgaagttgtcccatgtccgtgcaattagtatatgccatgtagatggctggacgattcctccagatttggacctacctgttcttcgaggttatctaggacaagcattgatagtctaccagcccaaattgacgctcgatgtacgctcaactctagtgagacgactgccagaaagtattcttcacccaaagagattgatgcgccttgttggtgatgaactcatactgctggatgggtttggcaacatggaatcccttcaagagttgggtattgttgatggatgcaactgctctataagttttgggaatgatctaggacttctgagcaagctaagggttcttcgagtaatgttcaagtgtgaagactctagcgatctggacactagaaagaaatctttgatgtcatccctctgcaaacttggaggtaacagccttcggtcactctatattaagagctctattactggtgccgattgttccgcggattcatggtgcccttctccaattctcctccaaaagtttgagtacaaaggtgtacgctacttctccagctttccaaagtggatcaagcccttgcttgtcgatctcgcgtacctggatttcaggattgagcgaatggaaggggaagatctatgtgttcttgaaagtttgcctgcacttactgtcctatgtctaacagtaaagcatgtttctgaagatggactcatgatcagtcatggtgcattccaatgtctaagacggcttgaattttgtaatacagatggacctggtctgatgtttgaagtagatatgccaaggcttgagtggcttaaacttgaattcaatgctgataaagcacaatcaacgtaccagcacttgtcctctctcaaacttattgatctcactgttgggatggtctcatctgaagacgaaaatgagcatgcgagggagaccatcaggtctgttatcagtgaccacgtcaagatgctttcttataaccccaaggttaacatcacatttttgtaa
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| Protein seq | MHELAYDMEDIIDLFTYRIDHEPASTTVGVKRIILKILRKVRKIHHQHKFAKQMHQLQVLVNEAYKQQKRYRLEEGISSKPHTEIDPRLPALYVEVEKLVGVEGPSKEIMEQLIGEKPTRQHRVVSAVGSRGSSKTTLVKQVYERIKGQFSCSAFLSVSQKPNINNLLRELLSRIWDGSGSSGATELYSDEQLIDKLRACLDNERYLVVIDDIWQRSAWETIHCALPKNNHASRIIITTRIKSVAQFCTSAEGFVYQMKPLNKSDSESLFLRRTFGAEENCPSQLEGVINKILYRCDGLPLAIITLASLLADKPRREEEWERVLKYMGSMPKKDSELEVMDKILSLSYNDLPHHMKNCFLYLGTFPEDHDIGKDILVWKWIAEGFIVAKQGFTLEEIAESYFYELINRSLVQPVNMLHGVSEHGCRVHDIVLSFIISRSTEENIFTMLDDQELPSSKTRIRRLSVWNKQQYPTFISQESMKLSHVRAISICHVDGWTIPPDLDLPVLRGYLGQALIVYQPKLTLDVRSTLVRRLPESILHPKRLMRLVGDELILLDGFGNMESLQELGIVDGCNCSISFGNDLGLLSKLRVLRVMFKCEDSSDLDTRKKSLMSSLCKLGGNSLRSLYIKSSITGADCSADSWCPSPILLQKFEYKGVRYFSSFPKWIKPLLVDLAYLDFRIERMEGEDLCVLESLPALTVLCLTVKHVSEDGLMISHGAFQCLRRLEFCNTDGPGLMFEVDMPRLEWLKLEFNADKAQSTYQHLSSLKLIDLTVGMVSSEDENEHARETIRSVISDHVKMLSYNPKVNITFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0237900 | RBH | 0.262520 | 1.201386 | 0.835943 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13430 | RBH | 0.177530 | 0.808032 | 0.215188 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0237900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008510 | SBH | 0.0 | 0.0 | 0.129775 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008410 | SBH | 0.0 | 0.0 | 0.258556 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008420 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008240 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008370 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0111900 | RBH | 0.0578625 | 0 | 0.028941 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008400 | RBH | 0.0 | 0.0 | 0.050531 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0117700 | RBH | 0.0470635 | 0.118865 | 0.0612595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0004390 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008550 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008410 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008330 | SBH | 0.0 | 0.0 | 0.326098 |
