Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0008080 | OGI:11020700 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:7071410-7072727 | ||||||||
| Gene Symbol | OsSRP-FAS, OrysaZ6c | ||||||||||
| DNA seq | atggaatcgtgtgcacggcggtgcgccgtctccggcctgatggcgctgtccatgcgcctcaccaagcagctctccgccgccgccgccagcaaggctggcgctgccggcaacctcgtcttctcgccgctgtccatctactccgcgctctccgtggtcaccgccggcgcgcgcgggcgcaccctgacagagctcctcggcgccctcggcgcagagtcccgcgagaagctcgccgcgaacgccggcgagatggcgcgtgctctccccgcccccggcggcggcgcggcacagccgggcggcggcccgcgcgtcgcgcacgcgtgcggagtctggcacgagcggacgcggacggttaggccggcgttccgcgacgccgccgccgcgtcgttcaacgccgcggccctcgccgtcgacttcctcaacaacgtaagcgaactatatatatatacacatgacaagatctaccaatctaatctgtcatgtatgcgtgtagccggaggaagcgaggaaggagatcaacagctgggttgcagcggcgacggagaacctcatcgacacgatcctcccgccggggtcggtgagcacggacacgggcctcgtggtcaccagcgccatctacttcaacggccaatggcggactcctttctgtaaggagataaccgagaagcgggcgttccaccgcctcgacggcggcgacgtcgaggcggacttcatgcgcagcggcgaggaccagtacatcgccgtgcacgacgggttcaaggtgctcaagatgccgtacgcggcttgtgtgagcgcgaggacgacgacgacgccgaggtactcgatgtacgtcttcctccccgacgagcgcgacggcctgtggagcctggaggacaggatggcggccggcggcggagagggcttcctccgcgagcacacgccggagcggcgcgtcgaggtcggcgagttcaggatccccaggttcaagctctccttcgacgacagcgtcgtgggcgcgctccagcgtctcggggtcagggacgtgttcaagccgttcgtggcggacctggccgacgtgctggaagcggagaactccggcgatgatccgccgctgtttgtgtcggacgtcaagcacaaggccgtcatcgaggtgaacgaggagggcaccgaggcggccgccgccaccgcggtttgtcttaccttcgcatcggcggcgccatcgtcacggcggccggcgagggtggatttcgtcgccgaccatccgttcgcgttcttggttgttgaggagtcgtcgggtgcggtgctcttcgccggccacgttgttgacccgacagatgagtaa
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| CDS seq | atggaatcgtgtgcacggcggtgcgccgtctccggcctgatggcgctgtccatgcgcctcaccaagcagctctccgccgccgccgccagcaaggctggcgctgccggcaacctcgtcttctcgccgctgtccatctactccgcgctctccgtggtcaccgccggcgcgcgcgggcgcaccctgacagagctcctcggcgccctcggcgcagagtcccgcgagaagctcgccgcgaacgccggcgagatggcgcgtgctctccccgcccccggcggcggcgcggcacagccgggcggcggcccgcgcgtcgcgcacgcgtgcggagtctggcacgagcggacgcggacggttaggccggcgttccgcgacgccgccgccgcgtcgttcaacgccgcggccctcgccgtcgacttcctcaacaacccggaggaagcgaggaaggagatcaacagctgggttgcagcggcgacggagaacctcatcgacacgatcctcccgccggggtcggtgagcacggacacgggcctcgtggtcaccagcgccatctacttcaacggccaatggcggactcctttctgtaaggagataaccgagaagcgggcgttccaccgcctcgacggcggcgacgtcgaggcggacttcatgcgcagcggcgaggaccagtacatcgccgtgcacgacgggttcaaggtgctcaagatgccgtacgcggcttgtgtgagcgcgaggacgacgacgacgccgaggtactcgatgtacgtcttcctccccgacgagcgcgacggcctgtggagcctggaggacaggatggcggccggcggcggagagggcttcctccgcgagcacacgccggagcggcgcgtcgaggtcggcgagttcaggatccccaggttcaagctctccttcgacgacagcgtcgtgggcgcgctccagcgtctcggggtcagggacgtgttcaagccgttcgtggcggacctggccgacgtgctggaagcggagaactccggcgatgatccgccgctgtttgtgtcggacgtcaagcacaaggccgtcatcgaggtgaacgaggagggcaccgaggcggccgccgccaccgcggtttgtcttaccttcgcatcggcggcgccatcgtcacggcggccggcgagggtggatttcgtcgccgaccatccgttcgcgttcttggttgttgaggagtcgtcgggtgcggtgctcttcgccggccacgttgttgacccgacagatgagtaa
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| Protein seq | MESCARRCAVSGLMALSMRLTKQLSAAAASKAGAAGNLVFSPLSIYSALSVVTAGARGRTLTELLGALGAESREKLAANAGEMARALPAPGGGAAQPGGGPRVAHACGVWHERTRTVRPAFRDAAAASFNAAALAVDFLNNPEEARKEINSWVAAATENLIDTILPPGSVSTDTGLVVTSAIYFNGQWRTPFCKEITEKRAFHRLDGGDVEADFMRSGEDQYIAVHDGFKVLKMPYAACVSARTTTTPRYSMYVFLPDERDGLWSLEDRMAAGGGEGFLREHTPERRVEVGEFRIPRFKLSFDDSVVGALQRLGVRDVFKPFVADLADVLEAENSGDDPPLFVSDVKHKAVIEVNEEGTEAAAATAVCLTFASAAPSSRRPARVDFVADHPFAFLVVEESSGAVLFAGHVVDPTDE |
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| Function | Putative serpin-Z6C [UniProtKB/Swiss-Prot:Q53MD1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0008080 | OsLima_11g0008080.01 | Chr11 | 7071410 | 7072727 | + | NAM | ||
| CDS seq | atggaatcgtgtgcacggcggtgcgccgtctccggcctgatggcgctgtccatgcgcctcaccaagcagctctccgccgccgccgccagcaaggctggcgctgccggcaacctcgtcttctcgccgctgtccatctactccgcgctctccgtggtcaccgccggcgcgcgcgggcgcaccctgacagagctcctcggcgccctcggcgcagagtcccgcgagaagctcgccgcgaacgccggcgagatggcgcgtgctctccccgcccccggcggcggcgcggcacagccgggcggcggcccgcgcgtcgcgcacgcgtgcggagtctggcacgagcggacgcggacggttaggccggcgttccgcgacgccgccgccgcgtcgttcaacgccgcggccctcgccgtcgacttcctcaacaacccggaggaagcgaggaaggagatcaacagctgggttgcagcggcgacggagaacctcatcgacacgatcctcccgccggggtcggtgagcacggacacgggcctcgtggtcaccagcgccatctacttcaacggccaatggcggactcctttctgtaaggagataaccgagaagcgggcgttccaccgcctcgacggcggcgacgtcgaggcggacttcatgcgcagcggcgaggaccagtacatcgccgtgcacgacgggttcaaggtgctcaagatgccgtacgcggcttgtgtgagcgcgaggacgacgacgacgccgaggtactcgatgtacgtcttcctccccgacgagcgcgacggcctgtggagcctggaggacaggatggcggccggcggcggagagggcttcctccgcgagcacacgccggagcggcgcgtcgaggtcggcgagttcaggatccccaggttcaagctctccttcgacgacagcgtcgtgggcgcgctccagcgtctcggggtcagggacgtgttcaagccgttcgtggcggacctggccgacgtgctggaagcggagaactccggcgatgatccgccgctgtttgtgtcggacgtcaagcacaaggccgtcatcgaggtgaacgaggagggcaccgaggcggccgccgccaccgcggtttgtcttaccttcgcatcggcggcgccatcgtcacggcggccggcgagggtggatttcgtcgccgaccatccgttcgcgttcttggttgttgaggagtcgtcgggtgcggtgctcttcgccggccacgttgttgacccgacagatgagtaa
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| Protein seq | MESCARRCAVSGLMALSMRLTKQLSAAAASKAGAAGNLVFSPLSIYSALSVVTAGARGRTLTELLGALGAESREKLAANAGEMARALPAPGGGAAQPGGGPRVAHACGVWHERTRTVRPAFRDAAAASFNAAALAVDFLNNPEEARKEINSWVAAATENLIDTILPPGSVSTDTGLVVTSAIYFNGQWRTPFCKEITEKRAFHRLDGGDVEADFMRSGEDQYIAVHDGFKVLKMPYAACVSARTTTTPRYSMYVFLPDERDGLWSLEDRMAAGGGEGFLREHTPERRVEVGEFRIPRFKLSFDDSVVGALQRLGVRDVFKPFVADLADVLEAENSGDDPPLFVSDVKHKAVIEVNEEGTEAAAATAVCLTFASAAPSSRRPARVDFVADHPFAFLVVEESSGAVLFAGHVVDPTDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0231200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12460 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0231200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008230 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008060 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007960 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007990 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0106900 | RBH | 0 | 0.007537 | 0.1210575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008030 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0113200 | RBH | 0 | 0.0122895 | 0.0305025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0000680 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008140 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008030 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008170 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008000 | RBH | 0.0 | 0.0 | 0.0 |
