Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0008050 | OGI:11020640 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:7037508-7040569 | ||||||||
| Gene Symbol | OsSRP-FAS, OrysaZ6c | ||||||||||
| DNA seq | atgacggcattcgcgctccgcctggcgaagcgtctcgccggcggtggcggcagcagcggcaacaacaacaagaagaacatcgtcttctcgccggtgtccctgtacgccgtgctggcactggcggtggctggggccaggggcaccaccctcgacgagctcctcgcactgcacggtgcggcgtcgctcgatgacctcacggagtccatccatcgcgtcatggaggtcgatctcgccgacgagtccgcgtctggcgagccgcccatctcctatgcctgcagcgcctggcacgatgagacgctcatgctgtcgtattcttccatggtcaccctgagcccatgttgccgccaccggcggtggtagggacgggcagaggaaggtgaaggggcggcggaggttggggttatgggagttggagaagggggaggcagaagtggtggtttggtggccgcagcagaggcaatggggacggaggaagcgatgcagagcggcggagggagtggtatgaaaaatctaagagtgtctgatattttttgtctttcatcaggcgtccgtgtaggagagtgtttcatattggggaaactattctaatccctcgaggggatgttccctcgtttgctcaaaaaccatctaaacggttatgaaaaattctggaaaaatttgacaacattcatacaacacatatatacaacttcccaaaatcttaagtctaaactcaactcacacgtcgagatataaaaaagacaaattcagcgtatgaatagtagcgtaatgtttatatctaaatttgtcttttttgtttctcgatgtgtagatcgaatttgaacatgaattttggtggactagtaggtatcattatactctacgttgttattttttttcagaatttttcacaactatttgcatcgaatttggaaaaaaaaaaggtatacgaggggatatcccctcgagggattagaatccactcccatcatattgtactacggagagagtagatatagctcttttttggaacacatactactaaatgggactatctatacaacattggactgaaaattagcctaaaaatctgtcaaatgtatctgtaacataattacactatgtttatactataattaaatatgtaattttcataattacattatatttgtactataattacatatgtaacttgcatgtaactcgcatgtaattacagtataagtaagatgtaagttcaaactagatcataaaaatataatagcccaatgaggtcacaggatcgatccctaaatatggtttgctttttcttcctaaaagcacatatcttgatgcgtattaaactgttagcatgaatctagaggacacatccaacggtttagaaagtgaaagatttagccataaaaaatctatcaacaaatatttagcaattccgctaaatttaaccgaattacaagtgaatggaaaatagagctaaatagcatcaacggcataaaaacgtaccattaaacgtaccctacgaggcatctagtggatgaccgcaaaacagctcaaatcctaccgtgtttaacacgacatatgtgtctcttatatgcatgcaggtgcgatacatataatccacggatagattacgtgtaatcctttcagcgtacgtaaaaaaaccgaattctcctccatggaagcatgggcacggttgttcgccggctccggcctggcggcgctgtccatgcgcctcaccaagcagctctccaccggcggcgaccacctcgccgcagccggcgtccagcagaacggcggcgccagcaaggccggccccagcaacctcgtcttctcgccgctgtccatctactccgcgctgtccgtggtcgccgccggcgcgcgcgggcgcacccagagcgagctcctcaaagccctcggcgccgggtcccgcgaggagctcgccgagaacgtcgccaagacgatggcgcgcgccctccccgacggcaccccgcagcgcggcgggccgcgcgtcgcgcacgcgtgcgcgatctggcatgagcgcgcgcgcacggtcaagccggcgttccgcgacgccgccgccgcctccttcaaggccgtgacgcgcgccgtcgacttcctccgcaatgtcagtaacacatacagaggacgcgatctatcaatctaatctccattaaattcttgcaactaatctctcttcttgatccgatcgatcagccagaggaagcttgtaaggagatcaacagatgggtgtcgacggcgacggagaacctcatcgacagcatcgtgtcgccggattcggtggacaagaacacgaggctcgtggtcaccagcgccgtctacttcaagggcagatgggcgaggccattcgacaaggagaagaccaagaaggacaagttccacctcctcgacggcggcggcgacgtcgacgccgatttcatgcgcagcggcgaggaccagtacatcgccgtgcaccgcgggttcaaggtgctcaggatgccgtacgcggcggcgcagcacgagcacaaccgggtctacaccaaggagcacctgcgccgccggttcgctgccgccgccgccgccgccgtcgtcccgaaggagatgcctgcgacgtcaccacggtactccatgtgcgtcttcctccccgacgagcgcgacgggctgtggaagctggaggacaggatggcggccggcggcgaggggttcctccgcaagcacatgccggagcggcgcgtcgaggtcggcgagttcaggatccccaggttcaagctctccttcggcgacagcgtcgtgcgcgcgctccggggtctcggtgtcagggccctgttcgacccggcgtgctggaggcggacaactccggcgaaccgccgctgttcgtgtcggacgtcgtgcaccgcgccgtgatcgaggtgaacgaggagggcaccgaggcggcggctgccacggcgatgattcttttaggtgcggcgccgccgccgccacgggtggacttcgtcgccgaccatccgttcgcgttctttgtagtggaggaatcgtcgggtgcggtgctcttcgccgggcacgtcgttgaccccacaaagcagtag
More
|
||||||||||
| CDS seq | atgacggcattcgcgctccgcctggcgaagcgtctcgccggcggtggcggcagcagcggcaacaacaacaagaagaacatcgtcttctcgccggtgtccctgtacgccgtgctggcactggcggtggctggggccaggggcaccaccctcgacgagctcctcgcactgcacggtgcggcgtcgctcgatgacctcacggagtccatccatcgcgtcatggaggtcgatctcgccgacgagtccgcgtctggcgagccgcccatctcctatgcctgcagcgcctggcacgatgagacgctcatgctgtccgtacgtaaaaaaaccgaattctcctccatggaagcatgggcacggttgttcgccggctccggcctggcggcgctgtccatgcgcctcaccaagcagctctccaccggcggcgaccacctcgccgcagccggcgtccagcagaacggcggcgccagcaaggccggccccagcaacctcgtcttctcgccgctgtccatctactccgcgctgtccgtggtcgccgccggcgcgcgcgggcgcacccagagcgagctcctcaaagccctcggcgccgggtcccgcgaggagctcgccgagaacgtcgccaagacgatggcgcgcgccctccccgacggcaccccgcagcgcggcgggccgcgcgtcgcgcacgcgtgcgcgatctggcatgagcgcgcgcgcacggtcaagccggcgttccgcgacgccgccgccgcctccttcaaggccgtgacgcgcgccgtcgacttcctccgcaatccagaggaagcttgtaaggagatcaacagatgggtgtcgacggcgacggagaacctcatcgacagcatcgtgtcgccggattcggtggacaagaacacgaggctcgtggtcaccagcgccgtctacttcaagggcagatgggcgaggccattcgacaaggagaagaccaagaaggacaagttccacctcctcgacggcggcggcgacgtcgacgccgatttcatgcgcagcggcgaggaccagtacatcgccgtgcaccgcgggttcaaggtgctcaggatgccgtacgcggcggcgcagcacgagcacaaccgggtctacaccaaggagcacctgcgccgccggttcgctgccgccgccgccgccgccgtcgtcccgaaggagatgcctgcgacgtcaccacggtactccatgtgcgtcttcctccccgacgagcgcgacgggctgtggaagctggaggacaggatggcggccggcggcgaggggttcctccgcaagcacatgccggagcggcgcgtcgaggtcggcgagttcaggatccccaggttcaagctctccttcggcgacagcgtcgtgcgcgcgctccggggtctcggtggccctgttcgacccggcgtgctggaggcggacaactccggcgaaccgccgctgttcgtgtcggacgtcgtgcaccgcgccgtgatcgaggtgaacgaggagggcaccgaggcggcggctgccacggcgatgattcttttaggtgcggcgccgccgccgccacgggtggacttcgtcgccgaccatccgttcgcgttctttgtagtggaggaatcgtcgggtgcggtgctcttcgccgggcacgtcgttgaccccacaaagcagtag
More
|
||||||||||
| Protein seq | MTAFALRLAKRLAGGGGSSGNNNKKNIVFSPVSLYAVLALAVAGARGTTLDELLALHGAASLDDLTESIHRVMEVDLADESASGEPPISYACSAWHDETLMLSVRKKTEFSSMEAWARLFAGSGLAALSMRLTKQLSTGGDHLAAAGVQQNGGASKAGPSNLVFSPLSIYSALSVVAAGARGRTQSELLKALGAGSREELAENVAKTMARALPDGTPQRGGPRVAHACAIWHERARTVKPAFRDAAAASFKAVTRAVDFLRNPEEACKEINRWVSTATENLIDSIVSPDSVDKNTRLVVTSAVYFKGRWARPFDKEKTKKDKFHLLDGGGDVDADFMRSGEDQYIAVHRGFKVLRMPYAAAQHEHNRVYTKEHLRRRFAAAAAAAVVPKEMPATSPRYSMCVFLPDERDGLWKLEDRMAAGGEGFLRKHMPERRVEVGEFRIPRFKLSFGDSVVRALRGLGGPVRPGVLEADNSGEPPLFVSDVVHRAVIEVNEEGTEAAAATAMILLGAAPPPPRVDFVADHPFAFFVVEESSGAVLFAGHVVDPTKQ |
||||||||||
| Function | Serpin-Z6B [UniProtKB/Swiss-Prot:Q53Q32] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0008050 | OsLima_11g0008050.01 | Chr11 | 7037508 | 7040569 | + | NAM | ||
| CDS seq | atgacggcattcgcgctccgcctggcgaagcgtctcgccggcggtggcggcagcagcggcaacaacaacaagaagaacatcgtcttctcgccggtgtccctgtacgccgtgctggcactggcggtggctggggccaggggcaccaccctcgacgagctcctcgcactgcacggtgcggcgtcgctcgatgacctcacggagtccatccatcgcgtcatggaggtcgatctcgccgacgagtccgcgtctggcgagccgcccatctcctatgcctgcagcgcctggcacgatgagacgctcatgctgtccgtacgtaaaaaaaccgaattctcctccatggaagcatgggcacggttgttcgccggctccggcctggcggcgctgtccatgcgcctcaccaagcagctctccaccggcggcgaccacctcgccgcagccggcgtccagcagaacggcggcgccagcaaggccggccccagcaacctcgtcttctcgccgctgtccatctactccgcgctgtccgtggtcgccgccggcgcgcgcgggcgcacccagagcgagctcctcaaagccctcggcgccgggtcccgcgaggagctcgccgagaacgtcgccaagacgatggcgcgcgccctccccgacggcaccccgcagcgcggcgggccgcgcgtcgcgcacgcgtgcgcgatctggcatgagcgcgcgcgcacggtcaagccggcgttccgcgacgccgccgccgcctccttcaaggccgtgacgcgcgccgtcgacttcctccgcaatccagaggaagcttgtaaggagatcaacagatgggtgtcgacggcgacggagaacctcatcgacagcatcgtgtcgccggattcggtggacaagaacacgaggctcgtggtcaccagcgccgtctacttcaagggcagatgggcgaggccattcgacaaggagaagaccaagaaggacaagttccacctcctcgacggcggcggcgacgtcgacgccgatttcatgcgcagcggcgaggaccagtacatcgccgtgcaccgcgggttcaaggtgctcaggatgccgtacgcggcggcgcagcacgagcacaaccgggtctacaccaaggagcacctgcgccgccggttcgctgccgccgccgccgccgccgtcgtcccgaaggagatgcctgcgacgtcaccacggtactccatgtgcgtcttcctccccgacgagcgcgacgggctgtggaagctggaggacaggatggcggccggcggcgaggggttcctccgcaagcacatgccggagcggcgcgtcgaggtcggcgagttcaggatccccaggttcaagctctccttcggcgacagcgtcgtgcgcgcgctccggggtctcggtggccctgttcgacccggcgtgctggaggcggacaactccggcgaaccgccgctgttcgtgtcggacgtcgtgcaccgcgccgtgatcgaggtgaacgaggagggcaccgaggcggcggctgccacggcgatgattcttttaggtgcggcgccgccgccgccacgggtggacttcgtcgccgaccatccgttcgcgttctttgtagtggaggaatcgtcgggtgcggtgctcttcgccgggcacgtcgttgaccccacaaagcagtag
More
|
|||||||
| Protein seq | MTAFALRLAKRLAGGGGSSGNNNKKNIVFSPVSLYAVLALAVAGARGTTLDELLALHGAASLDDLTESIHRVMEVDLADESASGEPPISYACSAWHDETLMLSVRKKTEFSSMEAWARLFAGSGLAALSMRLTKQLSTGGDHLAAAGVQQNGGASKAGPSNLVFSPLSIYSALSVVAAGARGRTQSELLKALGAGSREELAENVAKTMARALPDGTPQRGGPRVAHACAIWHERARTVKPAFRDAAAASFKAVTRAVDFLRNPEEACKEINRWVSTATENLIDSIVSPDSVDKNTRLVVTSAVYFKGRWARPFDKEKTKKDKFHLLDGGGDVDADFMRSGEDQYIAVHRGFKVLRMPYAAAQHEHNRVYTKEHLRRRFAAAAAAAVVPKEMPATSPRYSMCVFLPDERDGLWKLEDRMAAGGEGFLRKHMPERRVEVGEFRIPRFKLSFGDSVVRALRGLGGPVRPGVLEADNSGEPPLFVSDVVHRAVIEVNEEGTEAAAATAMILLGAAPPPPRVDFVADHPFAFFVVEESSGAVLFAGHVVDPTKQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0231200 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0231200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008180 | RBH | 0.0 | 0.0 | 0.332927 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008090 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008010 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007910 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007950 | RBH | 0.0 | 0.0 | 0.310464 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0106600 | RBH | 0.0426165 | 0.4187475 | 0.1890115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007990 | RBH | 0.0 | 0.0 | 0.028020 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0113200 | SBH | 0 | 0.0122895 | 0.0305025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0000630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008100 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008010 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008130 | RBH | 0.0 | 0.0 | 0.101193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007950 | RBH | 0.0 | 0.0 | 0.000000 |
