Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_11g0007060 OGI:11017470 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr11:5897490-5906927
Gene Symbol RLCK316, OsWD40-186, OsRLCK316
DNA seq

atgagcgaagaagatgatgaggagaggagcttatgggtggtgagtggtgaccccattgccatgatggaccaacccttcgatttcaattattctgagagtttttacttgttgagcggcggtgggggtaaaattgaattgataatgatttgtttagatggtgaatcagaattttttctgtacagaaaatcaggtgagatttctgctctcccatcacttgcccatctgtgcaattttaaaatggaagaatgaatctggatgatatcaggaacccaaaagggcaaaacaatgcaagggcaagaaaaaagagccagatgatgtagactgtagagtagctaattcttgctctttaacagcgtaacttactttttattgtcctcatgcagaaggccttctttactagcataaaccagaacaccgacaacaagttccagattcaactatggacccaacggatataacattctgattgttagaagaaattacagatggattctctgaggagcgaaaaattggtcaaggtgcatatggaacagtttataaggtaagttgagggcatcatttatttattctgaataacgtgacaaagcactgtatgggttctaaagcataaacatgctttacatgtttgcacatacatatattactatgatgagcaattaaccatgccccgctttttattgtccatgatacttaattgtagtatactgtgactacaaagcaaataaagccagatgctttacaatttcatccttgtcaaatgttatcaccagtaatgctaaatcaagctgtattgagtactgacgatagatccttaacagggagagtttagaaatggaaaagagattgcagtgaagatgcttcataatgatactctaggatttgacgataagcaattcgagaatgaatttcagaaccttatgaggcttgagcatccaaatattgtacggctagttgcttactgctatgagacacaacataaatacgcagagtacaaaggaagaatagtttttgctgcaataatacatagagcgctctgcttcgagtatttaaccggtggaagccttgagaatcatctttcaggcatgatgtttctccagttctagtatattccttagcatgccaagaaaaaaaacaatcctgggtatttgcattatgtttattatgttgatacctcttttctttgtctttgcagatgaatttcatggtcttgactggcctacaaggttcaaaattattaaagggacatgtgagggtttaaaatatctccacgagggactgaagccacctatttaccatttggatcttaaaccgggcaatatattgctggacaagaacatggtgccaaaacttgtggattttggattgtccaagctcttcaccgaagagaaaacaaggatcacacaaactccaatcgggacagtgtaagctgaataacttatttgattgaatcattttcttacaaatgtgctttacatatgtgttcatatgcagcggatacctgccgcaagaatacatagagaagaatgtactgtcaaacaagctagacatattcagcttgggtgttgtaatgctaaacataattacaggacctagagggcgctctagaagtgctgaaatgtcttcccaagaatttactgatctagtaagacatgttgtttgtctatcaggatcagtgatcatctttgaaaaactaccccttttgtattaagtattaatagtttagctttacattctaattttgcaggtactaggaaattggacaatcaggttacaagcaacatggaatggttcctcattggaagcatatcgctaacaggtgaaaacgtgcactgaaatagctctcaaatgcgtggagattgatagacacaaaagacccaatattttggatatcgtcaataagattaatgagacagaaactatgactggcaaggtaatcaatattgttactggcatgttttttttttaaaaaaataaacctagtgctaagttcttcataaaggcataaagtggaatcattttactttggtaaatgaagcggcgacatgttctttatttattttgtaaaattccttgtatattaaggaatgactattttagttctcgaacacgcaaaataattgcgcgtcattccactaagaagagaagaaagttacggaggagaaaacccctcgccaggagccaaatacaaacataacaaacttaagaaactgaaaaaacgtccgtgaccaaaagcaataccacaaagatgatctaagtgtttagggtgatcctcattttcagaatgttctccttgtttgttaggaattgctaggaatcaacatccctctgtctcacaacacttccgctgtattttgggattgcattttgttgacaattatccttctaggggatcaagaatgtaaaattaattgcagtttcacaaaaaagaagtaaaattaattgaagtgttctacatcaaacctgtttttaatcatgtgaagttgggtattcaataatttaatatgttttataatggtcaaaccctattaattattgctcttttatgtacctgcaatgttgggtatgcagtttcatagctgcacattacaatacatgtatttccacttactcaaaattcaaaaaggaacatatgtttatatttgaaaaacttatttagctgcatgtaatcttctttaattaactacattggctattgtttagttgccgataagccatggcccagagttccggttcgtgaacgaccaccgcgagaagccaacctcatacagcgacgagtttatcacccttgagagcaggttggccagccatttgaacttaagtgacacccaagtaaaccaagaagcttatcgccataacggttcttctttcaaagagaaagaagaggaccgagaggtgcatcaggtgaaattttatctctatattccgttggaatcatgccaattgcttacttttgttacatcggtaaaccctttcacaaatatcttacaattttgtctactttggttgctgtttcatttgatcagatcattccaatggaaaatcctgacattcccatagatgcgcatcccactgagccatggtacgtgaaattgtcatctctttttgtttgaggagacaaactacatgttctcatggtgataattgaaaccaagatttgcttgcatttctaaaagcgataaatttatcatcctttagtttacttgctacgatcccattttattttaaagcatgaaaagaaaatagcccccttcaaaagcctcattagtcatgacctggtggcctgctttacattaataaactttgtaaaaaatctacagttttctaaaataaattgtccacttgctttcaagctccttttagtgaagattaggtattatgagttttttctagactttttacatgaaaaaagggagtcctagttcttcagtacattctgatttaacgatcattgtgttttatgcttgtctctttcctgctgaaaattctttacttcatctagtggttaggttatactataatcatagttgttacagcccacaaaatcaaggttagatacttcagaatatatatgtgatgaacacctaatacatttcttttcctttcatagcatatgcaaaacagctgttaccagcttttaccataataaatttcttgtgtgcaggattttgacaggcaatatttttgcctcagttgacatcctgaactgtgatacacaagtgaccactcccagtgggctgtatatactatttttagtgttaattgttggtacctgtactttaggaagttccaaagatacaaattaacactaaacacatttcccattttaatgcttatcaatttctacttttaaatatgcctccctgcataaatcgattttcttaaaaatgaacccagttgtaacacaaatttcagaataattagttccgaatttaccatatgtataccatggttgttaaggcgataaggtgtaaggcgaggacccagcatgccttacgccttaggcggtaaagcgtaaggcgaggcgaccccttacgcctatatcaaaataggagatgaaggacttttttgtaatatctacagagtcgatggactaaaatggaagatgaaaataggaaatgaaggacttcttcgcaatatctacagagtccaaggactgaaacgaaagatggtgatagatatttatcaatccatccccatccccgaccccatcctcatccctaatcccatcgacacctagctccgtccgctccactgccgccgacggcaagaaccctgcccagccgccgcctccatctcctccatcccctccgctcctctggtccttcctcttcccctatcaccgtcactcatcgtcgggtggtgctggccgtttagggaggtggatgtggctttgccagtggtcggggacgacggtgacgacgatttaggtcagctctttttattcctcccccttgcactgctgctgctgcttctctaggatcggtttatctccttgattttgccctttctcctctagtttttcccgtaaggcggaggcaacgtaaggcggagcagacgccttactccctgggcacgccttaccaccttatggacgctaaggcgtcgccttacgaactccttaacaaccatgatgtataccagccaatgtaaatggaataactaccactgatgatataatctatctatctattatattattaaaggaatagaaaaatgagcctccacgttcgctctcatggcctataaattctcacattaatcggagaaaaagaaaaaaacagagtccatatagaaatacaatttagaaatagctgaaattcggaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaatttagaaatagctgaaattcggaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaattaggaaataactgaaatttagaattaaaaataaggaatattagaagtagagtatagagtccatatagaaatacaattaagaaaaaaaatagaaattcggaataaaaaaaaaggaatattagaagtagagtatagagtacatataggaatttaaaactaactaaaattcggaataaaggaatagaaaaatgagcctccacgttcgctctcttggcctagaaattctcacattaatcggagaaaaagaaaaaaacagagtccatatagaaatacaatttagaaatagctgaaattcagaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaatttagaaatagctgaaattcggaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaattaggaaataactgaaatttagaattaaaaataaggaatattagaagtagagtatagagtccatatagaaatacaattaagaaaaaaaaatagaaattcggaataaaaaaaaggaatattagaagtagagtatagagtacatataggaatttaaaactaactaaaattcggaataaaggaatagaaaaatgagcctccacgttcgctctcttggcctagaaattctcacattaatcggagaaaaagaaaaaacagagtccatatagaaatacaatttagaaatagctgaaattcagaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaatttagaaatagctgaaattcggaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaattaggaaataactgaaatttagaattaaaaataaggaatattagaagtagagtatagagtccatatagaaatacaattaggaaataatagaaattcggaattaaaaaaaaaggaatattagaagtagagtatagagtccatatagaaatacaattaagaaaaaaaaatagaaatttggaataaaaaaaaggaatattagaagtagagtatagagtccatataggaatttaaaactaactaaaattcggaataaaggaatagaaaaatgagtctccacgttcgctctcatggcctagaaattctcacattaatcggagaaaaagaaaaaacagagtccatatagaaatacaatttagaaatagctgaaattcagaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaatttagaaatagctgaaattcggattttaaaaataaggaatattagaagaggagactagagtccatatagaaatacaattagaaaataactgaaatttagaattaaaaataaggaatattagaagtagagtatagagtccatatagaaatacaattaggaaataatagaaattcggaattaaaaaaaaagaatattagaagtagagtatagagttcatgtagaaatacaattaagaaaaaaaatagaaattcggaataaaaaaaggaatattagaagtagagtatagagtccatattggaatttaaaactaactaaaattcggaataaacataataaaattaaaagtagagtttagagtccgtataaaaatacaatttacaaataactaaaattcgaaattaagaaaaacatgggaagaagagtttaaagtcaatataggaatacaatttagaagtaactgaaattcgaaattaaaaattaaagaatattgaaagatgagtttatatagaaatacaatttagaaatagctgaaattcggaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaatttagaaatagttgaaattcggaattaaaaaataaggaatattagaagaagagactagagtccatatagaattacaatttagaaatagttgaaattcggaattaaaaaataaggaatattagaagaggagactagagttcatatagaaatacaattaggaaataatagaaatttgaaattaaaaataaggaatattagaagtagagtatagagtccatatagaaatacaattaagaaaaaaatagaaattcagaattaaaaaataaggaatattagaagtagtgtatagagtccatactaaaaatcggaataaacgtaataaaattaaaggtagtgtttagagtccgtataaaaatacaattcacaaataactaaaattcgaaattaagaaaaacatgggaaggagagtttaaagtcaatataggaatacaatttagaagtaactgaaatttgaaataaaaaattaaagaatattgaaagatgagtttaaattccacatagaaatacaattagaaataataaaaattcagaattaaaaaaaaagaaatattaaaagacgggtctagagtccatataggaatatatataatttacaaataactaaaatttgatattaaaaataattaataactaacacgtatataaaatacaatatgaatattacacattagtagtttcgtaaagttattgcaaaatttaaaattatgctgtcattttaatatatttgaataatacaatgagaaaacatatatgctattatatgagagaaaatataatgatgctagccgcgcaatctgcgcgggccaccattctagttaatataaaaagaaccaccttctctcaatcttaaaaattagtggtaacaatgtaaagtttgcctatgcgagtgaaattcattgtaagtttctccatgcttataattagcaagctgaatggtgttggatgttctgggactaaggttggtccacatatttgtccacaggaaacagtgaacctgcttcaaagctcatttggaccaagaggcatgcttcctgacttaactcactgctagccatagactttacccctagtgtcacagcaaatgctaacatatcaataactccaaaactgcagctagcgcagccaagttgattgcgcggaagcaatggcttgtggttggatatcatgatggtttcataagagtgtacacatatgagtcccctgtacagcaagtgaagagattcaaagctcattcatggaacatcacctgtttggacgttcatccaactgagccttacgtgctgtcggtcagcttgctagacccaattaagatgggactggaacaagggctgggagtgcattaggatgtttgacatgcaaggtgtcctagcacatggtatcaaatttaacccgcacgattcatacaaatttgcggctgcttccatgatgaatgtacaggtgcagtgaaggcccgaggttttacctcctatcattttgatacacaatttttgaattaaaatctataatatggcaaatgcaggtttggaatttccgttcttcccgtcgagaattcacattgtttgggcatggatctgcagtgagctgtgttgattatttcactcgcggcaatcagcaatacataataactggttctttggacaaaacggccagggtaagataacttcactacaagagaatattatgatacctcttgatcatttttgtggaaatgtcgtaattatttcatcttgttgaatcagatctgggactgcaagagcaggacttgtgttcaaatactcatagggcatatggattgtgttacctgtgtttgttcccatccagatctgccaatcctacttacaggttcaaatgatgagacagttcgtctgtggaactcaattaccttcaagtaagttcctaagctgttacatctgttgtgccaaaacttctagacttgagatgtgatcttgccaaatcttcccatacaacagcacttggctcgtcgaggatatgccggtttaataacttttcctgtgcgagaagtttcagaaatgacattgtttttcataattttctagtcttgagggtgtactggactttgagcttggaaaagttggcgctatagtttgtttgaagggttcaaaacggtgagtaattaaaaggatcctgctattcatcttgatgttaggctgttgagcatgttacggcttcactgcatcttctgcaggtgtgaattaaaagaagcttgactgcaaacatgaattttaataatatgttgacagttgacattttgatttcattcctcaaatttctccatttggatgagaatacttgaatttggcagtactgtaggagatctggtctttcctgcaatcgtccatttgtgtaaaaactgtcaccagacccaaccagtttgctatttttacacttgtagttagcatgtttttttttttttacagggaagaatttatgcatctcagaatgtgcgctgcattcttttgttaatctagacgttctttcactccattgccaaacaatcttactgttgcagggttgtgatcggacatcaggctggactagtaattactgaaattcgccatgaacaacctggtcccagcaacaggtaa

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CDS seq

atgagcgaagaagatgatgaggagaggagcttatgggtggtgagtggtgaccccattgccatgatggaccaacccttcgatttcaattattctgagaatggattctctgaggagcgaaaaattggtcaaggtgcatatggaacagtttataagggagagtttagaaatggaaaagagattgcagtgaagatgcttcataatgatactctaggatttgacgataagcaattcgagaatgaatttcagaaccttatgaggcttgagcatccaaatattgtacggctagttgcttactgctatgagacacaacataaatacgcagagtacaaaggaagaatagtttttgctgcaataatacatagagcgctctgcttcgagtatttaaccgatgaatttcatggtcttgactggcctacaaggttcaaaattattaaagggacatgtgagggtttaaaatatctccacgagggactgaagccacctatttaccatttggatcttaaaccgggcaatatattgctggacaagaacatggtgccaaaacttgtggattttggattgtccaagctcttcaccgaagagaaaacaaggatcacacaaactccaatcgggacagtcggatacctgccgcaagaatacatagagaagaatgtactgtcaaacaagctagacatattcagcttgggtgttgtaatgctaaacataattacaggacctagagggcgctctagaagtgctgaaatgtcttcccaagaatttactgatctagaaattggacaatcaggttacaagcaacatggaatggtgaaaacgtgcactgaaatagctctcaaatgcgtggagattgatagacacaaaagacccaatattttggatatcgtcaataagattaatgagacagaaactatgactggcaagatcattccaatggaaaatcctgacattcccatagatgcgcatcccactgagccatggattttgacaggcaatatttttgcctcagttgacatcctgaactgtgatacacaagtgaccactcccactagcgcagccaagttgattgcgcggaagcaatggcttgtggttggatatcatgatggtttcataagagtgtacacatatgagtcccctgtacagcaagtgaagagattcaaagctcattcatggaacatcacctgtttggacgttcatccaactgagccttacgtgctgtcggtcagcttgctagacccaattaagatgggactggaacaagggctgggagtgcattag

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Protein seq

MSEEDDEERSLWVVSGDPIAMMDQPFDFNYSENGFSEERKIGQGAYGTVYKGEFRNGKEIAVKMLHNDTLGFDDKQFENEFQNLMRLEHPNIVRLVAYCYETQHKYAEYKGRIVFAAIIHRALCFEYLTDEFHGLDWPTRFKIIKGTCEGLKYLHEGLKPPIYHLDLKPGNILLDKNMVPKLVDFGLSKLFTEEKTRITQTPIGTVGYLPQEYIEKNVLSNKLDIFSLGVVMLNIITGPRGRSRSAEMSSQEFTDLEIGQSGYKQHGMVKTCTEIALKCVEIDRHKRPNILDIVNKINETETMTGKIIPMENPDIPIDAHPTEPWILTGNIFASVDILNCDTQVTTPTSAAKLIARKQWLVVGYHDGFIRVYTYESPVQQVKRFKAHSWNITCLDVHPTEPYVLSVSLLDPIKMGLEQGLGVH

Function G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [UniProtKB/Swiss-Prot:O64783]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_11g0007060 OsLima_11g0007060.01 Chr11 5897490 5905664 + NAM
CDS seq

atgagcgaagaagatgatgaggagaggagcttatgggtggtgagtggtgaccccattgccatgatggaccaacccttcgatttcaattattctgagaatggattctctgaggagcgaaaaattggtcaaggtgcatatggaacagtttataagggagagtttagaaatggaaaagagattgcagtgaagatgcttcataatgatactctaggatttgacgataagcaattcgagaatgaatttcagaaccttatgaggcttgagcatccaaatattgtacggctagttgcttactgctatgagacacaacataaatacgcagagtacaaaggaagaatagtttttgctgcaataatacatagagcgctctgcttcgagtatttaaccgatgaatttcatggtcttgactggcctacaaggttcaaaattattaaagggacatgtgagggtttaaaatatctccacgagggactgaagccacctatttaccatttggatcttaaaccgggcaatatattgctggacaagaacatggtgccaaaacttgtggattttggattgtccaagctcttcaccgaagagaaaacaaggatcacacaaactccaatcgggacagtcggatacctgccgcaagaatacatagagaagaatgtactgtcaaacaagctagacatattcagcttgggtgttgtaatgctaaacataattacaggacctagagggcgctctagaagtgctgaaatgtcttcccaagaatttactgatctagaaattggacaatcaggttacaagcaacatggaatggtgaaaacgtgcactgaaatagctctcaaatgcgtggagattgatagacacaaaagacccaatattttggatatcgtcaataagattaatgagacagaaactatgactggcaagatcattccaatggaaaatcctgacattcccatagatgcgcatcccactgagccatggattttgacaggcaatatttttgcctcagttgacatcctgaactgtgatacacaagtgaccactcccactagcgcagccaagttgattgcgcggaagcaatggcttgtggttggatatcatgatggtttcataagagtgtacacatatgagtcccctgtacagcaagtgaagagattcaaagctcattcatggaacatcacctgtttggacgttcatccaactgagccttacgtgctgtcggtcagcttgctagacccaattaagatgggactggaacaagggctgggagtgcattag

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Protein seq

MSEEDDEERSLWVVSGDPIAMMDQPFDFNYSENGFSEERKIGQGAYGTVYKGEFRNGKEIAVKMLHNDTLGFDDKQFENEFQNLMRLEHPNIVRLVAYCYETQHKYAEYKGRIVFAAIIHRALCFEYLTDEFHGLDWPTRFKIIKGTCEGLKYLHEGLKPPIYHLDLKPGNILLDKNMVPKLVDFGLSKLFTEEKTRITQTPIGTVGYLPQEYIEKNVLSNKLDIFSLGVVMLNIITGPRGRSRSAEMSSQEFTDLEIGQSGYKQHGMVKTCTEIALKCVEIDRHKRPNILDIVNKINETETMTGKIIPMENPDIPIDAHPTEPWILTGNIFASVDILNCDTQVTTPTSAAKLIARKQWLVVGYHDGFIRVYTYESPVQQVKRFKAHSWNITCLDVHPTEPYVLSVSLLDPIKMGLEQGLGVH

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Gene Transcript Chromosome Start End Strand Source
OsLima_11g0007060 OsLima_11g0007060.02 Chr11 5905666 5906927 + NAM
CDS seq

atgtttgacatgcaaggtgtcctagcacatggtatcaaatttaacccgcacgattcatacaaatttgcggctgcttccatgatgaatgtacaggtttggaatttccgttcttcccgtcgagaattcacattgtttgggcatggatctgcagtgagctgtgttgattatttcactcgcggcaatcagcaatacataataactggttctttggacaaaacggccaggatctgggactgcaagagcaggacttgtgttcaaatactcatagggcatatggattgtgttacctgtgtttgttcccatccagatctgccaatcctacttacaggttcaaatgatgagacagttcgtctgtggaactcaattaccttcaatcttgagggtgtactggactttgagcttggaaaagttggcgctatagtttgtttgaagggttcaaaacgggttgtgatcggacatcaggctggactagtaattactgaaattcgccatgaacaacctggtcccagcaacaggtaa

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Protein seq

MFDMQGVLAHGIKFNPHDSYKFAAASMMNVQVWNFRSSRREFTLFGHGSAVSCVDYFTRGNQQYIITGSLDKTARIWDCKSRTCVQILIGHMDCVTCVCSHPDLPILLTGSNDETVRLWNSITFNLEGVLDFELGKVGAIVCLKGSKRVVIGHQAGLVITEIRHEQPGPSNR

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0212300 SBH 0.000000 1.145010 1.281111
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g10640 SBH 0.606671 0.387054 0.158629
Nipponbare | IRGSP 1.0 | RAP-db Os11g0212300 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0007120 SBH 0.000000 0.000000 0.578656
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0007180 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0007010 SBH 0.000000 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0007030 SBH 0.000000 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0007030 SBH 0.000000 0.000000 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0093000 SBH 0 0.132161 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0007020 SBH 0.0 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0100000 SBH 0 0.0704805 0.0037615
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0007170 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0007040 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0007050 SBH 0.0 2.871059 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0007110 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0007140 SBH 0.0 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G007090 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0006930 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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