Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0004110 | OGI:11009020 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:2918419-2921965 | ||||||||
| Gene Symbol | BZIP81, OsbZIP81, OsbZIP81.1, OsbZIP81.2 | ||||||||||
| DNA seq | agcgacctcccaaaccccagccacttcgccgccgcagccgccgcagcagcagccgcctctcgccggcgttgaccgccgccgccgcagccatcatggacccgcgattcccgccgccggcgccgtccgggggagcgccgccgagggggcaccaccggcgggcgcactcggagacgttcatccggctgcccgacgccgacctgctgctcgacccggacggcgagttcggattctccgacctcgacttcccttccctctccgacgactcccccgcggcgtccgacccgaccccgcctcctcccccgccggcgctgccgcaggcggcgccgcggccgcctgggggtgcacacctgaggagcctctccctcgacgccgcgttcttcgatggcctcgcgttccagggaggaggagggggtggtggtgctgggagtgggagtagcggcggtggggctgggcataagaggagcgggtcgatggatggggagagctcgctgttcgagggcgagtccgcgccgcccgactacgccaagaaggccatgcccgccgataggctcgccgagctcgcgctcctcgaccccaagcgcgcgaagaggtcagaatttttttttttcacactacggtttcagtagaaatggagctggatttttttaaaaaaaaattagaaaagaagtttttcaacaacttttctttagctatttccctatactatttcaatttgataattaaacatgaaatcatttagttgaagttgctggcctattgtgcttcttcttcttcttcttttcctgaaatcgggctccttgttgcgttctcaatttgatggtgggtactctcttttgtgtaggattctggcgaacaggcaatcggcggcgaggtcgaaggagaggaagatcaagtacaccggtgagctggagaggaaggtgcagacgctgcagacagaggcaaccacgctttcaacacagctcacgctgctccaggtatgcattatagctcaagcttgtggtgcctctgcaactactaccataaaagtgaggctagtgctctatctgatcagttgattttttgtttggctatgcttttcttattctcttgtatcagacctgatattagcagctggaataaccggatttccctttagatacattgatgcagtattgtttcagcttacacatcatttgactaacatcaatttctacttgacactgtccagtgcaaccaatttactgtccactagcagtttttgggatggacgatcacaaaaaaattactgtattctttgattgcttcaacattgattgtttttacttgattgttacagctgttgtacattggcttctgagtttttctttctttaattttcctttttaacaatgagctcctgcacagaaccacctctagttccttcgagttcaaagttgctagctcttctggagttctggtacgattgttcaggcgtactgggatgctatgatcataaaaagtgttagtctctttttggttgtatttattctcaactgtgagtaccgctatagttctgtacttgcaaattgcactttccaggacaagcaggtttaggaattttcttgctattttgaatttataattttcactggtacttgactatttacatgaaaaatgttaggctgcttagatgctcgctttgacaagaccaaattattactttttcatagtgtactaaaaataccatgaacagatatagttctctccctgcatattctgtatactaaattggatatgtaatgggatcagaaggattttttttcttgcaaactgccactgcatacatttgtatttcagagaatgtcagtgagaattgaatttattgatatgctagcttttgtaacggcttatcccaaaatttccataatatcttatctaggtcatctagcccttgaacagttaagcacatcctatcagttcgcactttttgaaccagagatttttgattttggagagagcctatggtagtcctgcttacagggagaataagctgatctaccggctttatatgatttgtaaatatggaatagctgtcttgtgaatttatcattcgagagctaacaaattataatgagtaaccataagttttgtagtcttttactccgcaaatattacaagtttgtttcaggaaaacatagttgagcctgaacacattatgcattttttcttaattttcttttgtctgcaagtgttcttgtagccgatgtgacaactgaaggatttattgcacccaaaagtagggtcataatgctgatgcctatatactttataggttggtcatgtcagaaacagggttattgatgctatatttgaaagctggtttgattaaagatgatgaaattaggtggggggttgaaactttggtttggtggtcagggataacagctgatgtttatcttgctccacaaagcttcactaagtttttatatagggaatcaagaagtcaggactagtgatttttttttggggggaaattagtgtttttactccttgttaatgttatttctaactaaaatcactttaaattttactctgctgctaacaataaagatcatgtttctgattgtgcatcagtctcatccgctaatgttaatgttttcagcgtttgaatgttctatcttatggttttttgattttctaattatcttttgctcgcacatacctaattttataccctttttcatcttggaatttacttatggtcagagggacacgtctggcctaactgctgagaacagagagctcaaactccggttgcagtccatggaagaacaagctaaacttcgagatggtatgtcctattctttcagaagctcttccgtctttgttattaaggcccacaaataatgttatcaagctcttctttctttgtcattaaggcccagatataatattatcttgtttagggccattacaaggcaattgaaatcaaagaatccaaatatatttatccagataagcaaagcaacctgttgagaaagccttctctgtttaatgcagctctgaatgacgccctacgagaagaagttcagcggcttaagatagcggcaggccaagttccaaacatgaacggaaactccttcaatggaggactccagcagcagcagcagcagcagcagatgccgacctatttctcgcagcagcagcagatgcactacttaagtggccaccagggacgtcatcaccacccaaataatccccataactctttgaacggaggccaatcgatgagcggccagaccctaaatgactccatggatttcatgtgagcaggactcaagcacacctcaagttgcacgctaactgcaactcatgtactgtaaagatagctgatgtataccatatgcatatatgaatcattcgtagggtagctagctgatctttgtaccattactgaaaatgcaattcatcctcctgttcaatcatctgttaatgccttagtctgaaggttgaaagaactgtgtttaacatgtttgcgacggttgttttgtaaagatgttgttatagtgaatggaatgggttctgattg
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| CDS seq | atggacccgcgattcccgccgccggcgccgtccgggggagcgccgccgagggggcaccaccggcgggcgcactcggagacgttcatccggctgcccgacgccgacctgctgctcgacccggacggcgagttcggattctccgacctcgacttcccttccctctccgacgactcccccgcggcgtccgacccgaccccgcctcctcccccgccggcgctgccgcaggcggcgccgcggccgcctgggggtgcacacctgaggagcctctccctcgacgccgcgttcttcgatggcctcgcgttccagggaggaggagggggtggtggtgctgggagtgggagtagcggcggtggggctgggcataagaggagcgggtcgatggatggggagagctcgctgttcgagggcgagtccgcgccgcccgactacgccaagaaggccatgcccgccgataggctcgccgagctcgcgctcctcgaccccaagcgcgcgaagaggattctggcgaacaggcaatcggcggcgaggtcgaaggagaggaagatcaagtacaccggtgagctggagaggaaggtgcagacgctgcagacagaggcaaccacgctttcaacacagctcacgctgctccaggcgtactgggatgctatgatcataaaaagtgttagtctctttttggttgtatttattctcaactgtgagtaccgctatagttctgtacttgcaaattgcactttccaggacaagcagagggacacgtctggcctaactgctgagaacagagagctcaaactccggttgcagtccatggaagaacaagctaaacttcgagatgctctgaatgacgccctacgagaagaagttcagcggcttaagatagcggcaggccaagttccaaacatgaacggaaactccttcaatggaggactccagcagcagcagcagcagcagcagatgccgacctatttctcgcagcagcagcagatgcactacttaagtggccaccagggacgtcatcaccacccaaataatccccataactctttgaacggaggccaatcgatgagcggccagaccctaaatgactccatggatttcatgtga
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| Protein seq | MDPRFPPPAPSGGAPPRGHHRRAHSETFIRLPDADLLLDPDGEFGFSDLDFPSLSDDSPAASDPTPPPPPPALPQAAPRPPGGAHLRSLSLDAAFFDGLAFQGGGGGGGAGSGSSGGGAGHKRSGSMDGESSLFEGESAPPDYAKKAMPADRLAELALLDPKRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLSTQLTLLQAYWDAMIIKSVSLFLVVFILNCEYRYSSVLANCTFQDKQRDTSGLTAENRELKLRLQSMEEQAKLRDALNDALREEVQRLKIAAGQVPNMNGNSFNGGLQQQQQQQQMPTYFSQQQQMHYLSGHQGRHHHPNNPHNSLNGGQSMSGQTLNDSMDFM |
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| Function | Transcription factor VIP1 [UniProtKB/Swiss-Prot:Q9MA75] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0004110 | OsLima_11g0004110.01 | Chr11 | 2918419 | 2921965 | + | NAM | ||
| CDS seq | atggacccgcgattcccgccgccggcgccgtccgggggagcgccgccgagggggcaccaccggcgggcgcactcggagacgttcatccggctgcccgacgccgacctgctgctcgacccggacggcgagttcggattctccgacctcgacttcccttccctctccgacgactcccccgcggcgtccgacccgaccccgcctcctcccccgccggcgctgccgcaggcggcgccgcggccgcctgggggtgcacacctgaggagcctctccctcgacgccgcgttcttcgatggcctcgcgttccagggaggaggagggggtggtggtgctgggagtgggagtagcggcggtggggctgggcataagaggagcgggtcgatggatggggagagctcgctgttcgagggcgagtccgcgccgcccgactacgccaagaaggccatgcccgccgataggctcgccgagctcgcgctcctcgaccccaagcgcgcgaagaggattctggcgaacaggcaatcggcggcgaggtcgaaggagaggaagatcaagtacaccggtgagctggagaggaaggtgcagacgctgcagacagaggcaaccacgctttcaacacagctcacgctgctccaggcgtactgggatgctatgatcataaaaagtgttagtctctttttggttgtatttattctcaactgtgagtaccgctatagttctgtacttgcaaattgcactttccaggacaagcagagggacacgtctggcctaactgctgagaacagagagctcaaactccggttgcagtccatggaagaacaagctaaacttcgagatgctctgaatgacgccctacgagaagaagttcagcggcttaagatagcggcaggccaagttccaaacatgaacggaaactccttcaatggaggactccagcagcagcagcagcagcagcagatgccgacctatttctcgcagcagcagcagatgcactacttaagtggccaccagggacgtcatcaccacccaaataatccccataactctttgaacggaggccaatcgatgagcggccagaccctaaatgactccatggatttcatgtga
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| Protein seq | MDPRFPPPAPSGGAPPRGHHRRAHSETFIRLPDADLLLDPDGEFGFSDLDFPSLSDDSPAASDPTPPPPPPALPQAAPRPPGGAHLRSLSLDAAFFDGLAFQGGGGGGGAGSGSSGGGAGHKRSGSMDGESSLFEGESAPPDYAKKAMPADRLAELALLDPKRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLSTQLTLLQAYWDAMIIKSVSLFLVVFILNCEYRYSSVLANCTFQDKQRDTSGLTAENRELKLRLQSMEEQAKLRDALNDALREEVQRLKIAAGQVPNMNGNSFNGGLQQQQQQQQMPTYFSQQQQMHYLSGHQGRHHHPNNPHNSLNGGQSMSGQTLNDSMDFM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0004110 | OsLima_11g0004110.02 | Chr11 | 2918419 | 2921965 | + | NAM | ||
| CDS seq | atggacccgcgattcccgccgccggcgccgtccgggggagcgccgccgagggggcaccaccggcgggcgcactcggagacgttcatccggctgcccgacgccgacctgctgctcgacccggacggcgagttcggattctccgacctcgacttcccttccctctccgacgactcccccgcggcgtccgacccgaccccgcctcctcccccgccggcgctgccgcaggcggcgccgcggccgcctgggggtgcacacctgaggagcctctccctcgacgccgcgttcttcgatggcctcgcgttccagggaggaggagggggtggtggtgctgggagtgggagtagcggcggtggggctgggcataagaggagcgggtcgatggatggggagagctcgctgttcgagggcgagtccgcgccgcccgactacgccaagaaggccatgcccgccgataggctcgccgagctcgcgctcctcgaccccaagcgcgcgaagaggattctggcgaacaggcaatcggcggcgaggtcgaaggagaggaagatcaagtacaccggtgagctggagaggaaggtgcagacgctgcagacagaggcaaccacgctttcaacacagctcacgctgctccaggtatgcattatagctcaagcttgtggtgcctctgcaactactaccataaaagtgaggctagtgctctatctgatcagttga
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| Protein seq | MDPRFPPPAPSGGAPPRGHHRRAHSETFIRLPDADLLLDPDGEFGFSDLDFPSLSDDSPAASDPTPPPPPPALPQAAPRPPGGAHLRSLSLDAAFFDGLAFQGGGGGGGAGSGSSGGGAGHKRSGSMDGESSLFEGESAPPDYAKKAMPADRLAELALLDPKRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLSTQLTLLQVCIIAQACGASATTTIKVRLVLYLIS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0004110 | OsLima_11g0004110.03 | Chr11 | 2918955 | 2921963 | + | IsoSeq | ||
| CDS seq | ccgccgataggctcgccgagctcgcgctcctcgaccccaagcgcgcgaagaggattctggcgaacaggcaatcggcggcgaggtcgaaggagaggaagatcaagtacaccggtgagctggagaggaaggtgcagacgctgcagacagaggcaaccacgctttcaacacagctcacgctgctccagagggacacgtctg |
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| Protein seq | PPIGSPSSRSSTPSARRGFWRTGNRRRGRRRGRSSTPVSWRGRCRRCRQRQPRFQHSSRCSRGTRL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr11 | 2919260 | 2921227 | + | OsLima_11g0004110.02 | OsLima_11g0004110.02,OsLima_11g0004110.03 | All |
| SE | Chr11 | 2919392 | 2921143 | + | OsLima_11g0004110.01 | OsLima_11g0004110.01,OsLima_11g0004110.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.151075 | 0.250602 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0160500 | RBH | 3.791538 | 4.238872 | 4.394298 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g06170 | RBH | 3.349924 | 4.114140 | 1.621104 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0160500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004200 | RBH | 1.256607 | 2.955565 | 4.085163 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004270 | RBH | 0.124926 | 1.393214 | 1.061222 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004190 | RBH | 2.070349 | 15.726978 | 2.222390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004120 | RBH | 0.308218 | 0.594050 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004100 | RBH | 3.052989 | 5.594781 | 7.214253 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0051500 | RBH | 13.4019155 | 25.887394 | 20.7691835 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004190 | RBH | 0.346810 | 1.499733 | 0.528886 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0051800 | RBH | 17.0370485 | 24.9159995 | 15.3807675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004190 | RBH | 0.262663 | 0.512883 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004190 | RBH | 0.442798 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004190 | RBH | 3.778296 | 13.994881 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004090 | RBH | 0.440167 | 0.0 | 0.223939 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004210 | RBH | 0.574190 | 12.633700 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004170 | RBH | 0.398177 | 1.636182 | 1.712752 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004170 | RBH | 0.990510 | 16.477547 | 6.779368 |
