Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0003850 | OGI:11008570 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:2679685-2689679 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagatcgggttcggtatcttcatatcaagctccaaatactctctaagtacccatatattcagaaactgcaagaagagcaatgaattattttacggtccaaatgagaaatgtatatctagaattatctaccagggaacaaacctgatatggtttcttggttaacttgccctcaggtcttgcttctgttatccgagggaaccatgctctacacttgaacttttctgcctcttgggatgtgaaggtttttggggttataggaatggtgttttcttggttgttttgatgtagcacttcatgatcccgtttacaaaaacacccacattagttaataaacatagcatgctatgtactaaatctaattacaaaatcaagctttaacaaacctcgcgcaaaattgagaagtggacttcatgtgatgccaaagcaagcatgatcaaatcagcatcctgcaacagtttttcatcagttaactccattgtaagtagccgagacagaagcgagtttttcccaaagtgtctgctagctagttcgattgttcagaacaaaagagaccgagatattttcgtaccaatccatagaggcagtggtgagtattggggtcgtagccttccctgccgcgttgcgcacggatgaaagacatgatcttgtgctccccttctccaggaacatttgcgtcagatagtatcacctgagaacagtaaaccagagatgaacttgttataaaaatagatgcacaacggagacacgaatttttacatggaaaacccttgcgggaaaaaaaccacgggtgccaaccggcaatgatcactatagaggagatgattacaaacgtaggggaatcacaatgggaacgtcaccccttcccgtacggcttacaagagtatatataggggataatagaaagacacctaataggactcctactaggaaactaatctgaatatattgtgggcccaaaattcggatcacatatttaacaatctccaccttgagacgaatttcctcttgtagcataaaaacatccatcaccaaaaaaaatatctcatgtaggtaaaatcaccgcgcgccaaatagtctctaggactatactctaacacccaccaagcttgagcaaagctcaaacttagtagcaggaactggctttgtcatcatatcagctgtgttatcatgaatacttatcttgcataccttgacatcaccttcagcaatcagacctcgaataaagtgatatctcacatcaatgtgctttgttctctcatggaacatttggtcctttgtaaggcatattgcactttgactatcacaaaatatattaatgcaagacgtaactccacaaagcttagtgtacaaacctctaagccaaatagcttctttacaagctttagaaatagccatatactctgcttcagtagtagataagacaacagttgcttgcaaacttgccttccaactaacagcacatcctccaatagtgaaaacataacctgtgagcgatctccccctatccaaatctccagcaaaatctgaatccacataaccaacaagtccatctctagatctcccaaactgcaaacaagcactagatgtaccacatatgtatctgaaaatccattgaacaactttccaatgctctttgccaggattagccatgtatctattaacaacactcaatgcatgtgataagtcaggacgagaacataccatggcatatataagtgaaccaactgcacttgaatatggaactctagacatgtactcaatatcataatctgactgtggacataaatctgaagataatctaaaatgtgcagctaaaggagtactcactggttttgcatcatgcatattaaaacgacgaagaactttttcaatataacctttctgactaagatataacttgccagaatgtctttctctagtaatttccataccaagaattttcttcactgcacccaaatccttcatctcaaattcactactcaattgtgccttcaactttgctatctctgatttgtcttttgcaacaatcaacatatcatcaacataaagaagcaaatatatagctgaaccatcaacaactttgagataaacacagctatcataattggatcttctaaacttttgagaaagcatgaaagagtcaagtctcttataccactatctaggtgactgcttcaacccgtaaagagatttcttcaacctatagactaggttctcttttccaggaacaacaaaacctttaggttgctccatataaatgtcttcttctaactccccatgtaaaaatgcagtcttaacatccatttgctctagttcataatcatgcattgcaacaatactgagtaaagtgcgaattgaactatgcttcacaacaagggaaaagacatcattaaaatcaatacctggaatctggctataacctttagcaactaaccttgctttgtaccttgcctcatcacttgaagatatacctttctttcttttgaagatccacttgcaacggataggtttcttctcctttggcaacttcaccaattcccaagtatgattcttttcaagtgactccatctcatcatgcatagcagttatccatctattgcaatcatcagaaacaatagcctcagaatatgtagaaggttcggcattaccttcaatttcttctgctacacacaaagcataagcaactatgttcacttcttcaatatatctttgaggaggtttaatatttcttttaggcctatcttttgcaatagaacgttttggagactgctgaacaataggagaatttgaatcttcaataacaggttcatcttggttaatagcaacatcttctttttctggtgcatgccctgaactgatcaagtgctccacctgcacacttgctttctcctgactctcaacaggaacattagtagaaggtttgtcatgtaacataactgattcatggaaaacaacgtttctactaatcacaacctttttagtttcaggacaccataacttatagccttttacaccagacggataaccaagaaaaatgcacttaatagctctaggctccaatttaccattatcaacatgggcataagcagtacaaccaaatactcttaagtctgaataatttgctggggaaccagaccatacctcaattgaagtcttcttatcaatggcatagctaggtgatcgatttataagataacaagcagtggaaacggcttccgcccaaaactgtttaggcaaacctgcattagacaacatacaacgggcctttgatataattgttctgttcatacgctcagctacgccgttttgttgaggtgtgtgaggaacggtgtagtgacgcacaatgccttcagacttgcaatatgatttaaatatcttagaacaaaactccatcccattgtcagtacgaaggattttcaccttcctttcagtttgtctttcaaccatagttttccactctttaaacacattaaaagcttgatatttgtgcttcaagaaataaggccaaacttttcgcgaataatcatcaacgatagtcatcatgtaacgagtacctccaaaagatgtcttacgagcagacccccataaatcagaatgcacataatcaagaataccttcagtagtatgtgtagatgtgttgaacttcaccctcttatgcttgccaaagatgcaatgctcacaaaatttgagcttcccgatgctttgtccatctagcaatcctcgcttactcaattctgccaaaccaatttcactcatatgcccaagacgcatatgccaaagattagtagcatcgaaattagataatgaatcagaaactgctgcaacattacctaatatagttgtacctcgcagatggtacaggttggcagatttaatatcagctttcatcacaacaagagagcctttagttaccttcaaaattccgtctccaccggaatatttgtaccctttgcgatcaagagtacataaagagatgagacttctcttcaaatttggaatatgccgcacatctgacaatgttctgatacagtcatcaaacatcttgatctgaactgttccaatacctgcaacctcgcatggtgtatcatcacccattaaaacagtaccaacttgcatagcttcataggtggcaaaccaatccctattcgggcacatgtgatagatgcatgcagtattaagaatccactggtcactagtttgtgcacaaccagcataagcaacaagtaattctgcatcagacttcttatcagtaacaactgcggctttaccttcctcttctttcttaccttttggtacatattttcccgttctcttgtctttatcatgtagcttccaacactcagagatatcatgtccatctctcttgcagtatttgcatgacttatacctgcctctggactttgatctcccacggtagctacttgagcttttatctcttgattggttctttgtgttcttctcctgttgcctaccccaaacaatcaaaccttcagcttgtgaatttgaaccttcagagggtactatcttcttcatcttttctttggcatgcaaagcatcataaacttctttcaaagttagagtatcacgactataaagaatagtatccctgaagtttgcatatgagctaggcaatgaacacaatagaataaggcctaaatcctcttcatcatactttacttccatagactcaaggtcaacaacaatttccttgaaagcggagagatggtccattacagacccatcatcttgcaacttgtgcaaaactaaactttgcttcaggtgcatcttactggtcagatccttagtcatgcatatctattccagcttcaaccacagcccagtggctatctcctccttaagcacctcctgcaaaatattattagatagatgaagatgaatatatgacatagccttacgatcccttttcttctcatcgttggaccaatccggtgtcctcttgtcaaatctagaaagcgcatcatcgaggtcttgctgtgcaagaacggctcgcatcttcacttgccaaagtgagaatcttgtgtctcggtacaagagcagtagatcatacttcaaactcgccatgggaattaatcctgaatttgctagaaagaaattagggtaaacctagcaaaaacgcaaaacctggtacacttctcgtgtgacgtagcgaagtatgtagatctcctgggtacacaagcttggtgcgtatagcaaattcgcctctgggaaaaatcagcctgtactggacagacctctcggctgatactcctatacttttcctcagtgcgcgtgcgctgcagtagtactcctctgcttccgcttttctcttgcttcgctggccggctgctgctgcttcgattgcttgcgcggcttttctcctctgcgcgaggacaggaaacattgagtcggactgggaatcgacgagatgacgggagccgccgccgccgccgataagatcgatttcttcgatcgggaaacaatcgccggtggccgggaatagtagatcgatctccaatgctctgataccacttgttataaaaatagatgcacaacggagacacgaatttttacgtggaaaaccattgtgggaaaaaaaccacgggcgccgaccggcaatgatcactatagaggagatgattacaaacgtaggggaatcacaatgggaacgtcaccccttcccgtaaggcttacaagagtatatataggggataatagaaagacacctaataggactcctactaagaaactaatccgaatatattgtgggcccaaaatttggatcacatatttaacagaacttaactaagcaaatttgttgctgtcaaactaattaaatacaccttcatttttatcttggtaactattgaagtgaacaaacatggaactagaaatggaagacatgaactacatttaactggtgcaaggttgtcacgccgggaaattcactagtaatttccgaacttatttgtgcataaaatcctcgtccaggaatcagccgaggtacacaaactgacaatttaatatacaaatccatcataataactaaaccgataaatacttacttatgaggcacttagtcctcatcatgaagaaaactgcagcggaaaataaaatctagcgaagctccggctccactcccacaggcagctcaactggggtataagccaaacgtcttctccttctggatcctttttcttcaactgaggttgattgattattgcaaggtgagcatatgacatactcagcaagccacacagcaaatatgcaagtgcacaaggataccaaaggatggcataatataggctcatttgcaaaagcagcatttagcaaaacatttaagagaagtaaaaccgtggagtaattaatcagaaattttaatcaacactaaacaacacgcccatgctgctcaggcccaaccattctgaaacaaccatacccggctatacagatctaatctccaaaccaggagctaagcaaattattaccaggtataagatccataattattgtgagaggggtgagactaatcacgaaaaacattgctcaactcgtccataaccgcgggcacggctattcgaatagttttactctggccagaggtgtaccactgtacccacaagacacagcctcaacatcatgtctaccatgcgtcgcgatactggaaagtacccgaatagaggctgtgacaataccctttgcacaacacaactcaccacagtgcaccattcctggatcataatcacccccttataaaacaaggcatggactccccagcgacccccgtgggcttatctccgccacttctcagtctggtgctccgcaatgaatcatgctatacaaaaggtaaagccgttgcccacgctggcttgtggttggcacggttaatgtttcacaacagtagctcgcgaaccggtccttaattgtcatgagcacgactctcaaaaccatgtgctcacaacccaccattatcaggttttagttggcaagtaattaattaaccaatcacgattgaccatcgtgagctaccattaaatataaccgtaagtgatagtgaaacattagttatcccaattgtgtgctaatgtttctaagcatggctaagcaattatatctaatatctagctgaaccaatatataaagctcaactagtcaagttataatcacccaaggtatcaaggaataaagtaatcaagtacaaaagggccataacaaagaataggttaattccacccaatgacattcgaaaataaatgcacggttgaaataaatagagaatttaaatataggatcaacatgctcaaaggattgtgtttaggatctgtgtgacttgccttgcaataatcggtcttcaattaatcttcttgaacacttccggcgcactcgcgaaccttcgcaacgacggaaacgacaagctatcacgcaaaacgaagaaaaagactaataaaaaccaaataaacaatacataaaaagtaaacaaacatgtagatcatagttttagatgaattatgagacttgaacggcctcattctgacttcaaatgaatttattatgaattttacaagattaaatctaattaaagcccatttaaaaagaattaaataaatttaattcaatttatggacaattttaatatgtagatctttattttacacaatttttgcaacttgaaccatattaaactgagttcaaatgaattagttatgaatttttaaagattaaatcggattaaaacctttaaattgattttaattgaattatgacgcaataatgaattatttttgaaaaggaaaagaaggattattgcgtcagcggctagggtttgcggtggaccgggtgcacggcgacggttcacggaaacgaacggccgagatcaaccctatccaaaacagacggccgagatcgatcggtccacgaccggctcacggcggacgactccgatggcgtcagcgatgacgtcacctcggcggcggcggctcggcggctcgggctcgcatgctcgccggcgaacgacggcacgacggcgcgaacggaaggcaccaacgggtagagcgtgacgcggcgaactcaccggtgaccaaaggaacggcggaaaagcaacggacgacgccggcgacgaggaagaagcggcggcaaccttcgggtcgacggcggcaacggcgctccggcggtcttcggcggcggcgaaggggcggacggggacggcgacgaccttgcgaacccgatggtggcgacggcgaccgacgacggcggctgcaacggcggcgcgacgcggctgaaccaacggcaacgacggcggcgactagggctcacggggctagggcgctacagacggcggcgagcgaaggcgagggaggcgacgggtagaggagagctcgggggtccttatataggggctagcgagcggcggcggaggcccacggcgaccggcgacgagaaggaaagattggggaaaaacgaatccgaatcaaactcgaatccgcctatttccaaaggaaattgaccggagtttctataagagaaaaggaagaggagatcgaggagattatttcccctcaatcgatttggccggagaaggaaaggcgcggccggatttggaaggagacggcggcggcttgcgctagggtttcgggcggcagcggcggcgcgaggaagacgaacctgacaagcggggcccacctgtcagcggctgagagagagaggagagcggcggcacggcggactgggccggctgggccgagggaaagagagagagaagggttttgggccggctttcggcccaaagccaaaagaagacttttttaaaacctttttcaatttaaattatttcttaaatgcaattccatatattaaaaatacttccttagctcaaataaatcccagaaaaatctaggaattatagaattaagcaaagtatttatcaaaattttatctggcccacttttatgttgagatttaacaaattaaaattagatcttctcttttaaacttttaaaatcatttctaataattccttttaaacaacaatttatgatttaaggatttttaaacaagaaaagctcttaacaattataattagatcattaatgatcaaataattactgaactgttctttgtattatttaagaattgagctctgaaaaatccgagaaaatttcagagagtataattaaccatggagaatttaataaaaattaaatccatccatgctttatatttaggaaattttatttcccacattttacttcacttgcaaattaaagaacacttaatttaaattctattaataatttattaaatagtttataaatcctgaaacgaaaatcaggatgtgacaaaggtgcatcatgagacatgaggaacaagagaatgaaattgatagtgcaatactgtgatatcgatggagaccgacatacgttgatgtccttccagaggggatcgttgttcaagtgagcacgaatgtagtacttgagcgcatccgacagtttgtccatgaactccgtccccggtgtgatgacgttgggatcagaaacctcagacgaggaggaggtctcttggggcaacaccttcttcccctctgctctgaacctgtccctcaggatgttctcctccacctcctgtcaaaaccgaatgaaaaaggagggtaaagatcatataaatctgtcagtaaactcatcgaaatgtcgatgcagctagctgcctgcagagatggatagacagatagaatcaagaggaagaggttcactgacggcttgtttggcggccatggcggatttgaagcgcctggctcgctgctggttcatcttggcgcgaggggcgacgccatctgcattggatatattggtacaaatgaacaagatacgataaatatactcctgcaattaatatactagcaatgaatatggaggtaggaatgaaggacgaacctacctacggccaagtagaggaggctgatgggtctgacgatgcggatgaggcggtccatgtagtcgaacat
More
|
||||||||||
| CDS seq | atgttcgactacatggaccgcctcatccgcatcgtcagacccatcagcctcctctacttggccgtagatggcgtcgcccctcgcgccaagatgaaccagcagcgagccaggcgcttcaaatccgccatggccgccaaacaagccgaggtggaggagaacatcctgagggacaggttcagagcagaggggaagaaggtgttgccccaagagacctcctcctcgtctgaggtttctgatcccaacgtcatcacaccggggacggagttcatggacaaactgtcggatgcgctcaagtactacattcgtgctcacttgaacaacgatcccctctggaaggacatcaacgatgctgatttgatcatgcttgctttggcatcacatgaagtccacttctcaattttgcgcgagtttctgaatatatgggtacttagagagtatttggagcttgatatgaagataccgaacccgatctag
More
|
||||||||||
| Protein seq | MFDYMDRLIRIVRPISLLYLAVDGVAPRAKMNQQRARRFKSAMAAKQAEVEENILRDRFRAEGKKVLPQETSSSSEVSDPNVITPGTEFMDKLSDALKYYIRAHLNNDPLWKDINDADLIMLALASHEVHFSILREFLNIWVLREYLELDMKIPNPI |
||||||||||
| Function | 5'-3' exoribonuclease 2 [UniProtKB/Swiss-Prot:Q9FQ02] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0003850 | OsLima_11g0003850.01 | Chr11 | 2679685 | 2689679 | - | NAM | ||
| CDS seq | atgttcgactacatggaccgcctcatccgcatcgtcagacccatcagcctcctctacttggccgtagatggcgtcgcccctcgcgccaagatgaaccagcagcgagccaggcgcttcaaatccgccatggccgccaaacaagccgaggtggaggagaacatcctgagggacaggttcagagcagaggggaagaaggtgttgccccaagagacctcctcctcgtctgaggtttctgatcccaacgtcatcacaccggggacggagttcatggacaaactgtcggatgcgctcaagtactacattcgtgctcacttgaacaacgatcccctctggaaggacatcaacgatgctgatttgatcatgcttgctttggcatcacatgaagtccacttctcaattttgcgcgagtttctgaatatatgggtacttagagagtatttggagcttgatatgaagataccgaacccgatctag
More
|
|||||||
| Protein seq | MFDYMDRLIRIVRPISLLYLAVDGVAPRAKMNQQRARRFKSAMAAKQAEVEENILRDRFRAEGKKVLPQETSSSSEVSDPNVITPGTEFMDKLSDALKYYIRAHLNNDPLWKDINDADLIMLALASHEVHFSILREFLNIWVLREYLELDMKIPNPI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05840 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003940 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004020 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003930 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003870 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003840 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0048700 | SBH | 0.0384225 | 0.0444705 | 0.269688 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0049200 | SBH | 0.035059 | 0.010219 | 0.135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003930 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003850 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003960 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003930 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003930 | RBH | 0.0 | 0.0 | 0.0 |
