Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0002450 | OGI:11006030 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:1746021-1747696 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacgggaagtcgtcttcgttgagatgggcgacatctccaaacctctcgagaatccaatggccggtggagccagaaatgttgaagacgcagatcgaagtgtttgggattctcctgcgaactgagctggttggatcggcgtgtctgcagagttcctcgatgctcgctccatgggagaccacaatcactcgctcccctgccaatgcagcatacataataacttcattttctgtgtattagggcacccacaatggttatctatagactctctacaagagatccatgtcagcatattttcctacttggaatgtattaaatgaagagagagagcaaaactatctactaacttagagatagtctatagagaaaaacgaggcaatgcatgagagagctatagataccaatgtagacatactattaaggtggtttactattaatcgagtctattgctgagatgtacatgttttatagatagcaccttactttaccattgcgggtgctcttatgagcaactgcttgaatgactcggcataagaatgtgcaggtgcattctgaattttctttgcaccgctagctttcactttactaatagcatgcttaccagatttgaaatagctaactcaacaagcaaatttcactattctgtcaaccatacaaaaacttcagagtgagaatattacaatactgcctacccttgtgcttcccagctattgtgttcaagtacgaaacacaccgctcagatagttggtcaaggctctccccgccaccctgtcaaaacagaaaattgttcgaaacacatctactaatgttaggccaatcattatcaagcctaagaagttggtgagaaaattaaggatgaaagttacagggatttcttggcttctgtcttcagatgagaaagccttgtaagcgtcaggcttgcttctgacggcatcttcaaacttcaaaccatggagatctcccatgtgcctttctctcagtgcaggactcaacaccagctgaaagcaaatcaaatgagaaacatagcaagtttaccactggaaaatggaagcttcagcatataatgcatgtacttacgttggacacattgcaagctgtagctatagtttgagccgtttcggcagcacgcttcagatcagaggagtacacggcaactggcttagcttctttagccaaccgacgagcaaccttagacgatagcaccaattccaagttcaggtttttcgataatggaattccaagttcagacaaaaccccaaattacaatcctgtttcattatttgaaatgttttggtaaagctcaccataacagcttgctgtctgccagcctcattcaactctatatccgtttgtccctgttaaaattgttctgatgatctgtcaactcgagaaaattgatggaatgacgacgaggggactgaagagctattgactgaagaaggccatcaaccaagtataattctcaagaaaaattgaaaaggacaagttattggtgacaggaacaaagggaagacaagaccgccgacctgaatgatgcacaaggcgttcgccgatgtctccccatggcgcaccaccacaacctcggcgaagtcctcgccatgcgacgacacaggaggaggaatcgtccgctcgctcattgagtcattgtggttggtactggcatctgcaatctgccagg
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| CDS seq | atgagcgagcggacgattcctcctcctgtgtcgtcgcatggcgaggacttcgccgaggttgtggtggtgcgccatggggagacatcggcgaacgccttgtgcatcattcagggacaaacggatatagagttgaatgaggctggcagacagcaagctgttatggttgctcgtcggttggctaaagaagctaagccagttgccgtgtactcctctgatctgaagcgtgctgccgaaacggctcaaactatagctacagcttgcaatgtgtccaacctggtgttgagtcctgcactgagagaaaggcacatgggagatctccatggtttgaagtttgaagatgccgtcagaagcaagcctgacgcttacaaggctttctcatctgaagacagaagccaagaaatccctggtggcggggagagccttgaccaactatctgagcggtgtgtttcgtacttgaacacaatagctgggaagcacaagggtaggcagtattgtaatattctcactctgaaacacgccgatccaaccagctcagttcgcaggagaatcccaaacacttcgatctgcgtcttcaacatttctggctccaccggccattggattctcgagaggtttggagatgtcgcccatctcaacgaagacgacttcccgtag
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| Protein seq | MSERTIPPPVSSHGEDFAEVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLAKEAKPVAVYSSDLKRAAETAQTIATACNVSNLVLSPALRERHMGDLHGLKFEDAVRSKPDAYKAFSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKHKGRQYCNILTLKHADPTSSVRRRIPNTSICVFNISGSTGHWILERFGDVAHLNEDDFP |
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| Function | Phosphoglycerate mutase-like protein 4 [UniProtKB/Swiss-Prot:Q9SCS3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0002450 | OsLima_11g0002450.01 | Chr11 | 1746021 | 1747696 | - | NAM | ||
| CDS seq | atgagcgagcggacgattcctcctcctgtgtcgtcgcatggcgaggacttcgccgaggttgtggtggtgcgccatggggagacatcggcgaacgccttgtgcatcattcagggacaaacggatatagagttgaatgaggctggcagacagcaagctgttatggttgctcgtcggttggctaaagaagctaagccagttgccgtgtactcctctgatctgaagcgtgctgccgaaacggctcaaactatagctacagcttgcaatgtgtccaacctggtgttgagtcctgcactgagagaaaggcacatgggagatctccatggtttgaagtttgaagatgccgtcagaagcaagcctgacgcttacaaggctttctcatctgaagacagaagccaagaaatccctggtggcggggagagccttgaccaactatctgagcggtgtgtttcgtacttgaacacaatagctgggaagcacaagggtaggcagtattgtaatattctcactctgaaacacgccgatccaaccagctcagttcgcaggagaatcccaaacacttcgatctgcgtcttcaacatttctggctccaccggccattggattctcgagaggtttggagatgtcgcccatctcaacgaagacgacttcccgtag
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| Protein seq | MSERTIPPPVSSHGEDFAEVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLAKEAKPVAVYSSDLKRAAETAQTIATACNVSNLVLSPALRERHMGDLHGLKFEDAVRSKPDAYKAFSSEDRSQEIPGGGESLDQLSERCVSYLNTIAGKHKGRQYCNILTLKHADPTSSVRRRIPNTSICVFNISGSTGHWILERFGDVAHLNEDDFP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.174833 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0138600 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04320 | RBH | 0.000000 | 0.0 | 0.153760 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0138600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002560 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002580 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002530 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002510 | SBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0029700 | SBH | 1.1126435 | 3.581872 | 0.3973895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002570 | SBH | 0.000000 | 0.352109 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0031500 | SBH | 2.0336435 | 3.4487445 | 0.6454005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002400 | RBH | 0.096555 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002590 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002500 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002600 | SBH | 0.000000 | 0.987625 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002540 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002510 | SBH | 0.543573 | 0.000000 | 0.0 |
