Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0002180 | OGI:11005490 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:1557945-1563465 | ||||||||
| Gene Symbol | CIPK33, OsCIPK33, OsSnRK3.32, SnRK3.32, - | ||||||||||
| DNA seq | cacccaggacccgggtcattcattccaactcactctcgtctcctcttcttcttcttcaacctctcctcctttcatgctcttcttcgcatctcagcagccatttttcccttccccgggatctcctcttctattccttttcttccatcgccataagagcagccgcagatcgaattgcattgcagtctttgcagatttcagcttaattgccggtgagttgttctgatgcctcttctccttgatttctccaacctaccaaattgctttcatcccctctctagctatctctgcaactttctttgcattgtgtgcgttgtttccttttcaatctctgtagatgttgttgggtgctgtgtgctgagagaataaggttgctgaatttagcttgtcgtttctgtctccattggagattttttcggctttcttgaaattttctgtccccgtttactcctgtgggttcatcactgctaactacaagctgctgggatgtgattatttctaccctaccagtaatcctatggaaactgcttccagggttactttggtggagtagttcagttcctgacgactgagaatatctgaatatgtgttcattctcgaaccttcttcgtcttgctgctcctcgatccatacataaaaaaagttcctgcctttcctgtttgagagttctacccgtttaatgatcttgatttgtgttctttcaaaaagaaatattcttgatttgtactgtttctggaaatatgccctgccctcttaacctttgatgaatattcaatagcttctttgcagcttcctcgtgtctcattgactaaatatgctgtccagatccaaatgatgctctctttcctttttttttactgcaaattgatcggtcaagttttcggaaaaataaattaatggattcacatgatcttctatagttaccaattaatttaattgatagtccacaaatcatatggtatcttacactttgtaaaatcttggagaattgattgttcaacagctttgcatgtgtgtctctgtagcagaagatactattatatgttttcaaagactaaaatttgactagtgcatatatcattttggggaagaaataagacgagaaatacagcatacatctcattgtgctcctgtactagacaagtttgtaataggcttccgatctttttcagctaatgaataggctccggatgaaatttgttcacacaatcacagatactcaaaacatctttatcatgtatcatctattcatctttttccatgtatcaacagtaactgagcaaacgttttccacaggacagtgaagtgaaagcatcttcaagggcgtggaagctctctgagattccaaagggtcacaaggcaggggatgagtacaaccaaagtgaagagacgtgtgggaaagtatgagctaggaagaacaatcggagagggcacattcgcgaaggtcaagttcgcgagggataccgagaccggtgatccagtagccatcaagatcctagacaaggagaaagttctcaagcataagatggtcgaacaggtcactgtcaaacaccagctaacgaccaagttctgaatctgaattattgtagcacctttaattgtttggtgatatttcacatctggaatattatgatcctgtccttcagatttccctttatttaagtgactgtccttccgattctttttgcctgttaattactttcatgggacaaaaaacttggcactttgttaagggtttagtagctgtttatggaagcaataccttttgctgatgggtaactgtttttggaatgcagattaaaagggaaatttcgacgatgaagttgattaagcacccaaatgttgtccgtatatatgaggtaattaaaactattctcttccttttgtgttggtatctcagttaatcttatatttgttcagcagaaaatagatagggagagaaaaaggtttttaaagcatgtctagggtccatgccagaacctcaaagtatctatcattaatcataattttgtttacggaaattccagatgcaattagtcagaatctttttattaggtgacactgctaattgtcaaatcaatgttctctctgatttcaggtgatgggaagcaagacaaatatctacattgttttagaatatgttaccggtggtgagctctttgatacaattgtaagtgcttctgctatgttgtccatttccaatttaaatcgttatgtcttcttttcaaaacaaatgtaaaaaataccttttttaatttgtactgacatttacttgaattcccttttgtatttttaaggttaaccatggtcgtatgagggaagatgaggcaagaaggtacttccaacaattaattaatgctgttgattattgtcatagcaggggtgtgtaccacagggacttaaaagtgagttcatctccctttcctctgctgcctcttttgtcaacaagaaatatatttcagaatctaagcttccttccaaaagaaacaatctaaactacaatacttgcagccagaaaatttactactagattcatatgggaatctgaaggtctctgattttgggctgagtgcactatctcagcaaattaaggtaaaagtttattgctttatactgtatcatccaagtatgtaccaaccaggggcggagacagcatgggggcggggtgaagggggggggtctttagaCcccccctaccccctaatataccattagagcccccataatacccccctaaaattctaatccatatatttatagatgaggggctaatatagactttgtttaaggttgttagaaggcccaaaaggctaagaaggcccaaaaaatcctaacccaaccctaaatctctcttagttgctcttggtcattttgttttagcccctgctataattttatcctggctccgccactggtctactaccaacaggctacaaatattacagttcagaaatcattagataatcattatatgtctcttcatttaatatttcttttttctctgtggtcttgttcaggatgatggtttgctgcacacaacctgtgggacaccaaattatgttgcaccggaggtaatgtcagaaagaaaaattatagaattttaacctaccattagtttatttggaactatttttcaccagaagccattaataattcatacatttcaaccacctttgtgataggtccttgaagatcaaggatatgatggagcaatggcagatttgtggtcatgtggagttatcctgttcgttctgctagcagggtatttgccttttgaggactctaatcttatgacgttgtataagaaagtgagaattgtaccacttttagatcattgttgttgtattaattgttcatgcttatttgattcttctctgcacttcctggcagatatcaaatgcagagtttacgtttccaccttggacgtcttttcctgccaagaggttgttaacaagaatccttgatccaaacccaatgacggtatgctagaacaactgaataacatagtagataattaggtataatgcatcactgaaggcactgtaatgtgtcctctaataacacagtagatcttgtaatgcccatagcattccggataatactcaattctacaggggctagcactccttttataaggctcttctatgcttaataataatcattcaaacagatagtaataaataataaaataataccacctttcttcgtgacacaacattggatgatttcttaagctaacttcttgagctactattgtagagaataacaattccagaaatattagaggatgaatggttcaaaaagggctacaaacgcccagagtttgacgaaaaatatgacacgacattggatgatgttgatgctgtcttcaatgactctgaagtgagtaaactacaatatgcacttgaatttctgtttcacatgacatgaagataaaagcatgccagttgctaaatggtttgaccactgtgatttgacctcctccaggagcaccatgtgacagaaaagaaagaagaaccagaagctctcaatgcatttgaactgatttcaatgtcagcaggcctcaatcttggaaatttgtttgactcagagcaggtaagtgatctccctatttcacaatattgaccaacaaccctttgaacctattctccctgtatcgtttttatgaatgaacctgtaacttaaagttaagcgtcatcgtttttggttcaacttatacctcccctaactggaaacatgtaaactggctcactggcactttgtcaatttactcaatcatatggttggagaatgctgcatgtcacaagtcccaaaatatatgtagtagttcattggccagaatttttttgatttttgcacctcataattctcccataattttgttatagttttgcaacttattctgctgtactttaattttgttcacactatttcaggaattcaaaagggaaacaaggttcacatcaaaatgtccaccaaaagaaattgtccgcaagattgaggaagccgcaaaacctctaggatttgatgttcagaagaaaaattacaaggtctgctccccttgcctaacaactatctgcatgaatatcccttttaaagtaatgggttctagggataatttatagcaaattcaaatatatattttctgagtgctgaattttttttgattgattgaccagttaaggctagaaaaagtgaaagcagggagaaaaggaaatctcaatgttgctactgaggtaatatgaaaaactgctatactgaaatctggtttgtgtaagcttcttcaatctaacatttattgtgcactattattcagatactgcaggttgcaccctctcttcatatggttgaagtacgaaaagcaaaaggcgacaccctcgaatttcacaaggtagatcgtgcaaattaaaagctgatattcatgaattatcattgaaaaattgagtcagtgctttgatgattggatcaactactcacagaattatgacttatgttttatttttcttttgcaatatttggttgaatggcttgtactgaatcacttcaaacttgtaatgtgttgcagttctacaagaacctctccagaaccttaaaggatgttgtttggaaatcagatgatcttcaaaatcaactttcctagagtaacttgggagaggaggaatgggtgaactattttagcatcccattcttttgaatcagcattcccatttctagaggctggaaaagcagaaagcatgtttattgcatctgtaattagatgtgagtggccctgtaaactatgtttggtctccactagtgttgtaaatgctgctcttatttgtcagagaacccttgtgatagctcaagtgaagctgatcactcaatgggttttgtgtgtcaagttttgtatgtaaatcagaatcttgtgaggaacaagtatattaattggttagcattattcattttcatttacactgtgaagttgtttggttttctttgtttgcatagccccagaacaactgtaaccagaaattgaggtgacaaa
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| CDS seq | atgagtacaaccaaagtgaagagacgtgtgggaaagtatgagctaggaagaacaatcggagagggcacattcgcgaaggtcaagttcgcgagggataccgagaccggtgatccagtagccatcaagatcctagacaaggagaaagttctcaagcataagatggtcgaacagattaaaagggaaatttcgacgatgaagttgattaagcacccaaatgttgtccgtatatatgaggtgatgggaagcaagacaaatatctacattgttttagaatatgttaccggtggtgagctctttgatacaattgttaaccatggtcgtatgagggaagatgaggcaagaaggtacttccaacaattaattaatgctgttgattattgtcatagcaggggtgtgtaccacagggacttaaaagatgatggtttgctgcacacaacctgtgggacaccaaattatgttgcaccggaggtccttgaagatcaaggatatgatggagcaatggcagatttgtggtcatgtggagttatcctgttcgttctgctagcagggtatttgccttttgaggactctaatcttatgacgttgtataagaaaatatcaaatgcagagtttacgtttccaccttggacgtcttttcctgccaagaggttgttaacaagaatccttgatccaaacccaatgacgagaataacaattccagaaatattagaggatgaatggttcaaaaagggctacaaacgcccagagtttgacgaaaaatatgacacgacattggatgatgttgatgctgtcttcaatgactctgaagagcaccatgtgacagaaaagaaagaagaaccagaagctctcaatgcatttgaactgatttcaatgtcagcaggcctcaatcttggaaatttgtttgactcagagcaggaattcaaaagggaaacaaggttcacatcaaaatgtccaccaaaagaaattgtccgcaagattgaggaagccgcaaaacctctaggatttgatgttcagaagaaaaattacaaggtctgctccccttgcctaacaactatctgcatgaatatcccttttaaattaaggctagaaaaagtgaaagcagggagaaaaggaaatctcaatgttgctactgagatactgcaggttgcaccctctcttcatatggttgaagtacgaaaagcaaaaggcgacaccctcgaatttcacaagttctacaagaacctctccagaaccttaaaggatgttgtttggaaatcagatgatcttcaaaatcaactttcctag
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| Protein seq | MSTTKVKRRVGKYELGRTIGEGTFAKVKFARDTETGDPVAIKILDKEKVLKHKMVEQIKREISTMKLIKHPNVVRIYEVMGSKTNIYIVLEYVTGGELFDTIVNHGRMREDEARRYFQQLINAVDYCHSRGVYHRDLKDDGLLHTTCGTPNYVAPEVLEDQGYDGAMADLWSCGVILFVLLAGYLPFEDSNLMTLYKKISNAEFTFPPWTSFPAKRLLTRILDPNPMTRITIPEILEDEWFKKGYKRPEFDEKYDTTLDDVDAVFNDSEEHHVTEKKEEPEALNAFELISMSAGLNLGNLFDSEQEFKRETRFTSKCPPKEIVRKIEEAAKPLGFDVQKKNYKVCSPCLTTICMNIPFKLRLEKVKAGRKGNLNVATEILQVAPSLHMVEVRKAKGDTLEFHKFYKNLSRTLKDVVWKSDDLQNQLS |
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| Function | CBL-interacting protein kinase 33 [UniProtKB/Swiss-Prot:Q2RAX3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0002180 | OsLima_11g0002180.01 | Chr11 | 1557945 | 1563465 | + | NAM | ||
| CDS seq | atgagtacaaccaaagtgaagagacgtgtgggaaagtatgagctaggaagaacaatcggagagggcacattcgcgaaggtcaagttcgcgagggataccgagaccggtgatccagtagccatcaagatcctagacaaggagaaagttctcaagcataagatggtcgaacagattaaaagggaaatttcgacgatgaagttgattaagcacccaaatgttgtccgtatatatgaggtgatgggaagcaagacaaatatctacattgttttagaatatgttaccggtggtgagctctttgatacaattgttaaccatggtcgtatgagggaagatgaggcaagaaggtacttccaacaattaattaatgctgttgattattgtcatagcaggggtgtgtaccacagggacttaaaagatgatggtttgctgcacacaacctgtgggacaccaaattatgttgcaccggaggtccttgaagatcaaggatatgatggagcaatggcagatttgtggtcatgtggagttatcctgttcgttctgctagcagggtatttgccttttgaggactctaatcttatgacgttgtataagaaaatatcaaatgcagagtttacgtttccaccttggacgtcttttcctgccaagaggttgttaacaagaatccttgatccaaacccaatgacgagaataacaattccagaaatattagaggatgaatggttcaaaaagggctacaaacgcccagagtttgacgaaaaatatgacacgacattggatgatgttgatgctgtcttcaatgactctgaagagcaccatgtgacagaaaagaaagaagaaccagaagctctcaatgcatttgaactgatttcaatgtcagcaggcctcaatcttggaaatttgtttgactcagagcaggaattcaaaagggaaacaaggttcacatcaaaatgtccaccaaaagaaattgtccgcaagattgaggaagccgcaaaacctctaggatttgatgttcagaagaaaaattacaaggtctgctccccttgcctaacaactatctgcatgaatatcccttttaaattaaggctagaaaaagtgaaagcagggagaaaaggaaatctcaatgttgctactgagatactgcaggttgcaccctctcttcatatggttgaagtacgaaaagcaaaaggcgacaccctcgaatttcacaagttctacaagaacctctccagaaccttaaaggatgttgtttggaaatcagatgatcttcaaaatcaactttcctag
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| Protein seq | MSTTKVKRRVGKYELGRTIGEGTFAKVKFARDTETGDPVAIKILDKEKVLKHKMVEQIKREISTMKLIKHPNVVRIYEVMGSKTNIYIVLEYVTGGELFDTIVNHGRMREDEARRYFQQLINAVDYCHSRGVYHRDLKDDGLLHTTCGTPNYVAPEVLEDQGYDGAMADLWSCGVILFVLLAGYLPFEDSNLMTLYKKISNAEFTFPPWTSFPAKRLLTRILDPNPMTRITIPEILEDEWFKKGYKRPEFDEKYDTTLDDVDAVFNDSEEHHVTEKKEEPEALNAFELISMSAGLNLGNLFDSEQEFKRETRFTSKCPPKEIVRKIEEAAKPLGFDVQKKNYKVCSPCLTTICMNIPFKLRLEKVKAGRKGNLNVATEILQVAPSLHMVEVRKAKGDTLEFHKFYKNLSRTLKDVVWKSDDLQNQLS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0002180 | OsLima_11g0002180.02 | Chr11 | 1557971 | 1563391 | + | IsoSeq | ||
| CDS seq | ctcactctcgtctcctcttcttcttcttcaacctctcctcctttcatgctcttcttcgcatctcagcagccatttttcccttccccgggatctcctcttctattccttttcttccatcgccataagagcagccgcagatcgaattgcattgcagtctttgcagatttcagcttaattgccgga |
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| Protein seq | LTLVSSSSSSTSPPFMLFFASQQPFFPSPGSPLLFLFFHRHKSSRRSNCIAVFADFSLIAG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr11 | 1560346 | 1560959 | + | OsLima_11g0002180.02 | OsLima_11g0002180.02,OsLima_11g0002180.01 | All |
| A5 | Chr11 | 1562491 | 1562621 | + | OsLima_11g0002180.01 | OsLima_11g0002180.02,OsLima_11g0002180.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.867709 | 0.356471 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0134300 | RBH | 3.778243 | 4.545320 | 15.545571 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03970 | RBH | 2.738431 | 3.015172 | 4.061051 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0134300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002290 | RBH | 0.847774 | 34.759140 | 14.491813 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002320 | RBH | 0.960545 | 6.364296 | 9.605253 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002310 | RBH | 0.701523 | 26.980438 | 30.430006 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002250 | RBH | 0.075220 | 0.752381 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002250 | RBH | 13.105371 | 19.426409 | 37.380089 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0032000 | RBH | 5.931676 | 5.661222 | 46.655548 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002280 | RBH | 0.105488 | 0.902388 | 3.822163 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0030900 | RBH | 14.6994285 | 8.488547 | 35.43882 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002180 | RBH | 0.163834 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002330 | RBH | 1.010948 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002320 | RBH | 7.570258 | 12.337976 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002260 | RBH | 1.830206 | 0.0 | 3.490984 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002330 | RBH | 0.531547 | 10.397595 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002260 | RBH | 0.042965 | 8.709639 | 7.688534 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002240 | RBH | 0.376947 | 14.288969 | 16.769239 |
