Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0000370 | OGI:11001190 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:331114-335647 | ||||||||
| Gene Symbol | MFS6, OsMFS6 | ||||||||||
| DNA seq | gagatgagggagacatgcatgtttgtgtcgtttataatgagaaatatatataggggggttacgacagcggggcggcgctggatggatgctgtatatatgggcaagagcgagcacagccggccggaggaggaattaagcaacaagctaagctaagctagccagaggaaacaaaaggaaaaggagagatcgatcgagcgatggagcagcagcagcagcagcaggggcggaggagaggcgcaggatggcggcgttgggcggtgctggtggcgacggtgtggatacaggcggtgacggggacaaacttcgacttctcggcctactcgtcggcgctcaaggcgtccctgggtgtctcgcaggaggcgctcaactacctggccaccgcctccgacctcggcaaggcgctgggctggtcgtcgggcctcgccctcatccacctccccctccccgccgtcctcctcctctccgccgcctccggcctcgccgcatacgccctccagtacgccctcatcctcgactacctccacctcccctacccgctcgtacgtacacacttcgtcttctctctctctctctttttttcttttctttattatcgatcgcctattcgctttgttttaattaagcttgattattcaattagcttgctagttacgagtacctataaggtgtccttccatcatgattatatacaagaaatataatggagatcttagccaactatgctgattgatcgtagtagtacgtggatgtatagaggccaaggccggccagcagggtttggagattcgagatcgatagtactagtagtagtagtaatgaagctactgatctgagtggccacaaataagttgcaatcatatatcacatttacggacgcaattctaacgtcccattcaactgctactgaattatatgtatattaaatcgatatctgagagactcaatgcatccatatctctccgtcgccgcgcccacctctcgtttttccttggcttacaattttttggaatcgtctgctgcaatcgattaccttttaccaatatactcctactgtgtattataatattgcccatgttatacatagtcaatcttatatactgtgtatctgcagcaataagttagtttctgccttaaacatgtatctggattaattgattacttcaatcaactcaacgtatattttgggatggagggaataacaaacaactcctaaccaacaacacccgcatatgccatcatcaaccacgatcaaaagtgtttatttaattgattctttctcatctcccttttaattttcataaatgttagctgcttgcgcctatttcaaaagatgaagagccaaaaataaaaatcccacacacgatcgaagaagaaacaaacaaatggttctcaagtctcagcttaaaatggtccagaaaagtataaatagctaaaactccatcggtaagttcacgcttcactcatgaaaaactcacgaacaaactaacgctacggcactatgtaaaactaaaatccattctgttactctaaacatccaggtagctctgtgtcctgaattacagttaataaaactcgctatcaaaatacccatgtcagtgagtcctgcattattggcatcatcttgaattaatgccttcctgcccaactatcagtttcagcttcaattcagctttgactagcagatgaacaagctaccattcttcccccacataattcttcttacaaaaggaccatcgctacactgtatccccttcttttggtttctttctgactggtagagtggtaggtgttgatgccaactgccaagtatagcctccttccttcaacttctccatcataaacagtagcaagaaagaagcagcacatcctttttatcagttacagtaatcaaatagtctgaacgtattcctgattttagagcctataaccaatcctctgccaccataatatattttgaattacagtaataaatcttgttagactgcatagctcaaagacataattagccgtcctggtttgtcccctgaaactaaaacagcatacctagacaaggtcagcaagttaattacctattctcacttctcagaccggctgcagttttccttttctgaaaccaacggcatgaggcctttaacaaaggaacgtcctcgcaacctccaaatcgaaggcactccctctaaaacagaagccacatcatcagcctagaacaaaattcctgacaaagaaaagcattgctagagcgtcagccatgaatgtgatgacaacaacaacttcacacacgcctgttgcattgcatttttcagtactcagaacagcatcctcaacctgctcatgcttcacatattcttcctttccttgggcagatccttcaatatcagtaggaagtatgacatcctttttacagatgaggaagtatgacatcctttttacagatgaggaagcataacatcctgataaacacaaataccaattagatcacagaattattaccgaagatcatgccattacagtttttccgcaacagtacataacactctcttccaaacactactcgaagcagcaaatctggatttatcactttgttgtacaatgcattacatattagtatacttcacatcttgcatacattaaaccaggatgtatgaactgatcgttggtgcataataacttactgttaggcatgttttcctttaactttcatcaacagtattaaaccagcgatgtacggacaaatgctttttaactgtttgcagccagtaaaactgagctaaccaactgattgactaatttggatcatgtattacaatgcaggtgttcttgatctgcctggtagcaggttgcagtatctgctggttcaacacagtatgctttgtgctctgcattcgcagtttctcctcgagcaatcgcccactggccctctccctctccataagcttcaatgggctaagtgctgcattctacaccctctttgccaatgccctctcccccttttccccatctgtctacctccttctcaatgccattgtccctctcgtcgtatctcttgttgcactgccagcaatactcctctgccacccacatgacggccacctccacgttgtgcccaagcatgacaaacgtatctttcttggtctctacctcctcgcgttcatcactggcatatatctagtgatcttcggctctttcaacacaaccaactccactgcatgggtggtccttacaggtgccatggtcctcctcgccctccctctcatcatccctgcctcctccagttgttctcatgtggacacacatgaccctgaacctactgttcaactcaaccacgaagattcaagaaaaccacttttgctcaatagtgaccacagcacagagtccaatgccatgatgcagaaaacagtggaacacccaatgcaggattgttgcttgggaacagtactggagaagggacgcatgttggttctttgtgaggagcatagtgcaaagaagcttatccagtgcgtcgacttctggctatactacatagcctacttctgtggtgccactgttgggctagtgtacagcaacaacttggggcagattgcacaatcatttcaccgggaatctcagctcaccatgcttcttgccgtctactcctcctgttccttctttggtcgccttctctctgcacttccagacttccttcgcaggtccctctgtcttgttctatatacttgaatgcatcctaattctcatcagcttgcccataaactaactatatatattgaatttgcatgcaggaaggtttcgtttgctcggacagggtggcttgcagctgcgttggttcccatgccaatggcgttcttcctaatgtggaaattgcatgatgtaaacactctggtagcaggaacagcactaattggtctaagctcaggcttcatctttgctgcagcagtgtcagtgacctctgagctctttggaccaaacagcattggcatgaaccataacatcctcatcaccaacatccctcttggatcacttctctacggtcagattgctgccctagtgtatgatgcaaatggcctaaagatgccagtaatagacaaccgcaatggcatggttgacactatggtggtttgcatggggccaaagtgctactcaaccacattctttgtgtggggttgtatcacattcctggggttggtgtcaagcataatcctattcttgagaacaagaacagcttacagtgctgctggtggtcagcaagttgtaaacaccttagcgaagtttcgacttgacagaactccttgatctgttccttactgctatgaaaccatggctactttgtacaagttttgattgagttctaggtgaactaggttagtagataacatgcatgtaaataaaatcatcagagagaatcgcagagaaagaagcagattaggatagcagttccatttacagggcattgatgttgagttgttgacatccaagatgccacggagttaattttgaacaattgtttctaacataaatagtaaaatcaagaacgtttctc
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| CDS seq | atggagcagcagcagcagcagcaggggcggaggagaggcgcaggatggcggcgttgggcggtgctggtggcgacggtgtggatacaggcggtgacggggacaaacttcgacttctcggcctactcgtcggcgctcaaggcgtccctgggtgtctcgcaggaggcgctcaactacctggccaccgcctccgacctcggcaaggcgctgggctggtcgtcgggcctcgccctcatccacctccccctccccgccgtcctcctcctctccgccgcctccggcctcgccgcatacgccctccagtacgccctcatcctcgactacctccacctcccctacccgctcgtgttcttgatctgcctggtagcaggttgcagtatctgctggttcaacacagtatgctttgtgctctgcattcgcagtttctcctcgagcaatcgcccactggccctctccctctccataagcttcaatgggctaagtgctgcattctacaccctctttgccaatgccctctcccccttttccccatctgtctacctccttctcaatgccattgtccctctcgtcgtatctcttgttgcactgccagcaatactcctctgccacccacatgacggccacctccacgttgtgcccaagcatgacaaacgtatctttcttggtctctacctcctcgcgttcatcactggcatatatctagtgatcttcggctctttcaacacaaccaactccactgcatgggtggtccttacaggtgccatggtcctcctcgccctccctctcatcatccctgcctcctccagttgttctcatgtggacacacatgaccctgaacctactgttcaactcaaccacgaagattcaagaaaaccacttttgctcaatagtgaccacagcacagagtccaatgccatgatgcagaaaacagtggaacacccaatgcaggattgttgcttgggaacagtactggagaagggacgcatgttggttctttgtgaggagcatagtgcaaagaagcttatccagtgcgtcgacttctggctatactacatagcctacttctgtggtgccactgttgggctagtgtacagcaacaacttggggcagattgcacaatcatttcaccgggaatctcagctcaccatgcttcttgccgtctactcctcctgttccttctttggtcgccttctctctgcacttccagacttccttcgcaggaaggtttcgtttgctcggacagggtggcttgcagctgcgttggttcccatgccaatggcgttcttcctaatgtggaaattgcatgatgtaaacactctggtagcaggaacagcactaattggtctaagctcaggcttcatctttgctgcagcagtgtcagtgacctctgagctctttggaccaaacagcattggcatgaaccataacatcctcatcaccaacatccctcttggatcacttctctacggtcagattgctgccctagtgtatgatgcaaatggcctaaagatgccagtaatagacaaccgcaatggcatggttgacactatggtggtttgcatggggccaaagtgctactcaaccacattctttgtgtggggttgtatcacattcctggggttggtgtcaagcataatcctattcttgagaacaagaacagcttacagtgctgctggtggtcagcaagttgtaaacaccttagcgaagtttcgacttgacagaactccttga
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| Protein seq | MEQQQQQQGRRRGAGWRRWAVLVATVWIQAVTGTNFDFSAYSSALKASLGVSQEALNYLATASDLGKALGWSSGLALIHLPLPAVLLLSAASGLAAYALQYALILDYLHLPYPLVFLICLVAGCSICWFNTVCFVLCIRSFSSSNRPLALSLSISFNGLSAAFYTLFANALSPFSPSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHVVPKHDKRIFLGLYLLAFITGIYLVIFGSFNTTNSTAWVVLTGAMVLLALPLIIPASSSCSHVDTHDPEPTVQLNHEDSRKPLLLNSDHSTESNAMMQKTVEHPMQDCCLGTVLEKGRMLVLCEEHSAKKLIQCVDFWLYYIAYFCGATVGLVYSNNLGQIAQSFHRESQLTMLLAVYSSCSFFGRLLSALPDFLRRKVSFARTGWLAAALVPMPMAFFLMWKLHDVNTLVAGTALIGLSSGFIFAAAVSVTSELFGPNSIGMNHNILITNIPLGSLLYGQIAALVYDANGLKMPVIDNRNGMVDTMVVCMGPKCYSTTFFVWGCITFLGLVSSIILFLRTRTAYSAAGGQQVVNTLAKFRLDRTP |
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| Function | Protein NUCLEAR FUSION DEFECTIVE 4 [UniProtKB/Swiss-Prot:F4I9E1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0000370 | OsLima_11g0000370.01 | Chr11 | 331198 | 335647 | + | NAM | ||
| CDS seq | atggagcagcagcagcagcagcaggggcggaggagaggcgcaggatggcggcgttgggcggtgctggtggcgacggtgtggatacaggcggtgacggggacaaacttcgacttctcggcctactcgtcggcgctcaaggcgtccctgggtgtctcgcaggaggcgctcaactacctggccaccgcctccgacctcggcaaggcgctgggctggtcgtcgggcctcgccctcatccacctccccctccccgccgtcctcctcctctccgccgcctccggcctcgccgcatacgccctccagtacgccctcatcctcgactacctccacctcccctacccgctcgtgttcttgatctgcctggtagcaggttgcagtatctgctggttcaacacagtatgctttgtgctctgcattcgcagtttctcctcgagcaatcgcccactggccctctccctctccataagcttcaatgggctaagtgctgcattctacaccctctttgccaatgccctctcccccttttccccatctgtctacctccttctcaatgccattgtccctctcgtcgtatctcttgttgcactgccagcaatactcctctgccacccacatgacggccacctccacgttgtgcccaagcatgacaaacgtatctttcttggtctctacctcctcgcgttcatcactggcatatatctagtgatcttcggctctttcaacacaaccaactccactgcatgggtggtccttacaggtgccatggtcctcctcgccctccctctcatcatccctgcctcctccagttgttctcatgtggacacacatgaccctgaacctactgttcaactcaaccacgaagattcaagaaaaccacttttgctcaatagtgaccacagcacagagtccaatgccatgatgcagaaaacagtggaacacccaatgcaggattgttgcttgggaacagtactggagaagggacgcatgttggttctttgtgaggagcatagtgcaaagaagcttatccagtgcgtcgacttctggctatactacatagcctacttctgtggtgccactgttgggctagtgtacagcaacaacttggggcagattgcacaatcatttcaccgggaatctcagctcaccatgcttcttgccgtctactcctcctgttccttctttggtcgccttctctctgcacttccagacttccttcgcaggaaggtttcgtttgctcggacagggtggcttgcagctgcgttggttcccatgccaatggcgttcttcctaatgtggaaattgcatgatgtaaacactctggtagcaggaacagcactaattggtctaagctcaggcttcatctttgctgcagcagtgtcagtgacctctgagctctttggaccaaacagcattggcatgaaccataacatcctcatcaccaacatccctcttggatcacttctctacggtcagattgctgccctagtgtatgatgcaaatggcctaaagatgccagtaatagacaaccgcaatggcatggttgacactatggtggtttgcatggggccaaagtgctactcaaccacattctttgtgtggggttgtatcacattcctggggttggtgtcaagcataatcctattcttgagaacaagaacagcttacagtgctgctggtggtcagcaagttgtaaacaccttagcgaagtttcgacttgacagaactccttga
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| Protein seq | MEQQQQQQGRRRGAGWRRWAVLVATVWIQAVTGTNFDFSAYSSALKASLGVSQEALNYLATASDLGKALGWSSGLALIHLPLPAVLLLSAASGLAAYALQYALILDYLHLPYPLVFLICLVAGCSICWFNTVCFVLCIRSFSSSNRPLALSLSISFNGLSAAFYTLFANALSPFSPSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHVVPKHDKRIFLGLYLLAFITGIYLVIFGSFNTTNSTAWVVLTGAMVLLALPLIIPASSSCSHVDTHDPEPTVQLNHEDSRKPLLLNSDHSTESNAMMQKTVEHPMQDCCLGTVLEKGRMLVLCEEHSAKKLIQCVDFWLYYIAYFCGATVGLVYSNNLGQIAQSFHRESQLTMLLAVYSSCSFFGRLLSALPDFLRRKVSFARTGWLAAALVPMPMAFFLMWKLHDVNTLVAGTALIGLSSGFIFAAAVSVTSELFGPNSIGMNHNILITNIPLGSLLYGQIAALVYDANGLKMPVIDNRNGMVDTMVVCMGPKCYSTTFFVWGCITFLGLVSSIILFLRTRTAYSAAGGQQVVNTLAKFRLDRTP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0000370 | OsLima_11g0000370.02 | Chr11 | 331114 | 332073 | + | IsoSeq | ||
| CDS seq | gagatgagggagacatgcatgtttgtgtcgtttataatgagaaatatatataggggggttacgacagcggggcggcgctggatggatgctgtatatatgggcaagagcgagcacagccggccggaggaggaattaagcaacaagcta |
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| Protein seq | EMRETCMFVSFIMRNIYRGVTTAGRRWMDAVYMGKSEHSRPEEELSNKL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.396693 | 0.102000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0107400 | RBH | 0.467769 | 1.088946 | 1.677742 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01590 | RBH | 0.632397 | 1.038081 | 0.431884 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0107400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000510 | RBH | 0.663507 | 0.000000 | 0.387255 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000520 | RBH | 0.667634 | 0.286528 | 0.771159 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000520 | RBH | 0.485629 | 1.074955 | 2.890931 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000520 | RBH | 0.274191 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000500 | RBH | 9.074398 | 0.000000 | 4.921950 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0006400 | RBH | 1.5046565 | 1.7376225 | 0.924995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000500 | RBH | 0.185226 | 0.118399 | 0.637811 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0007200 | RBH | 2.3531675 | 1.302781 | 3.5244 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000360 | RBH | 0.374808 | 0.223949 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000500 | RBH | 0.895933 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000510 | RBH | 15.435676 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000510 | RBH | 0.140064 | 0.0 | 0.718234 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000510 | RBH | 0.362789 | 0.927350 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000520 | RBH | 0.454781 | 0.352679 | 1.694811 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000510 | RBH | 2.124680 | 3.542261 | 2.666592 |
