Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0018340 | OGI:10064390 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:23350156-23354676 | ||||||||
| Gene Symbol | EF1, Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 | ||||||||||
| DNA seq | TCACAAGGACAGGTCCAAGCTGACGACGCTGCTAAGCATGGCCGGAGTACTCCGCCGCGAGCAGCCACCGGCGACGAGGCTCGTCGTCGACGACGGCGACGAGATCAGCCAGTTGCTGCTGCTGCCTTCGCTGCAGCAGTATGCGCCGGCGCCGCCGCTGCTCCGGCAGCTGAGCCCCGAGTCCAGCGTCAGTGACAGCGAGAGCTCGTCGCCGTCGCCGTCACGCTCCTCCTCCTCTGCCGCCGCCGTCGTACGCCTCGCCTTCCTCCCGTGCCTGATCGCGCCGTTCTCCGGTGGTGGCGTCGCCTTGTGCTCCTGCAGAAATTGCACTTAATTTGAGTGATTGAGTCTAGCTAGGAGAGGAAGATATGCTGCAGTGACCAAACGATAAACAAGAGAAACATCATCGGGTCTTCCGGCTAGCTTTATAAAGTGGTGAGCTAGATGATTTGGACTCGAAGCCTCACCCCTTCTAATTATTTGATATTAGATTATTCTCTAATATTCGTGTCTTTACCAAACGACAAAAAAAAAATGCACACGCAAACACTTTTCAGTGATGAGCTAGCTATATACTTCCTCCATTTTAATTTATAAGATGTTTTGACTTTAGTTAAAGTCAAACTGTTTTAAGTTTGTAGAAAAATAATAACATTTTCAACCCAAGATAAATTTATTATGAAAATATATTCAATTATTGATTTGATGAAACTAATTTAGTATTATCAATATTCCTATATTTGTCTATAAACTTAGTTGAATTTGAAACAGTTTGACCTGAAATGGAGGGAGTAGCTCTATATATATATACCTCGCGAGAGCCACGCCTTGTCGTCGTCGCCATCACGACGAGGCCCAGCAGCCTTGGCGGGTCGTCGTGTCCGGCACCGTCTGCAGCGGCAGGTGGTGCGCCGTGCGCCATGGGCGTGTAGTAGGAGTAGTAGGCAGCTGGGACAGGGAGGCCGGAGGACACGTCCCTCTCACATATTCCTTGGCTTCTGAGAAAGCCTGTTTGGGTGCTCGCCTCTGCTCGTCTCGTCTCCATCTCATTTGGCCTGCATTGGTGCAAACGAAATTATTTTTCTTATAGTACTATTCTAGTATGAGGTTACACTGCACAGTGTTTAAGATGATATCTCGAATTAATATCACAGCTGAATAATCTGGTAATGTTGCTATTCATTGGGACGGTGGGACCTGCGGTCTTCAGTTAACTGAAAACGTGTAAAACACCAGTCAATTTTATTTTTGACGGTTAGGATTGCTCTAAAACTCGTGCTACATCCTATAAGCCTTAGTGCCTTATCCATCTCTCTTCTTTCACTTTCTCCCCATTCATCCATCATCGCTGCAGTTACCGTTCTACCCCACTTCACCGTCTGGGTTCCACCACCCTCTGCCGAGGTTCGTTGGCCGCTCCCCACCCCACCTCCTCCCTTTGTCTTCGCCGGATCACACCGTTACTATTATCTTCTTTCTTAAGTCCGGTGTTGGTTCTCTCACGCTGCCTCTCCTCTACCGTCCCTAACCATTTTGTTTGTCCGTCATCTCCCTAAGCACCCAAATCCTCCACTTTTCTCCTCCCTCACCTCCACCCACATAACAACCAAACTACTGGAGTACTTGTCTAAATACATAGCTAGAAGTTGTTACTCCCTCCGTCCCAGTATATTTGACATTTTACTTCCTGTCCATTGTCCCACAATGCTTGACGTTTTAGCAAGGAGCATAGATGTGGGACCGGCGCAGCAAGGTACGATTCAAATTTTACTAACCGGGTTATCAGGAACAGTAGCTCATCCATGATTCCAACGTGGCAGGAACAACAGATCGATGTATTCTTGGTTTGAAATGACTACTCATTATGGTTATTCGAAGTAACTAGTACTCCAGTTAGAGCTATATGGTAATTTTCACCTAAGCTTAATTTGGCTCAACTATACTAGAACGTCTAGTATACTAGGACAGAGTGAGTATATATTTTAGAACGATATAGTACTATCCTAGAAAGTGTTTATTATACACGAATCACTTTAGCCTCCACCATTTGGCCCAACATAACTTTGTTTCTATCCTTTTAGGTACCTCCAGTTAGTCCGCAAATAGATGAGTTTTGTTCCTGTACTCCTTTCGAACCCTGTCAATACTGGAGTATATTTTTACCAATTCCACACGTACCAATATAAAACACAAAATATAATACCCCCACTTTATCAAATCCTAATATAATTATTCCTCTCTTTACTCCTAGTACATTTATACCCTACTTTCCTAAACTGTGATGTATTGGTTACTCAGAAATAAACTTATTTTGGGACAAATGGGAAGGGCTAAGAATAAACTTTTCATGGGATGGAGATAGTAGGAATTATATACCATAGGAGTACACGTGAAGTTTCTCAAAGCTAGCTCACTTTCTAATTCTAGGCATGCATGCAGAGATTATCATGCTATACTCCTACATTCAACATAGTCCTAGCATGGAGTAGTATTGTCAAGTAGGCTAGGTAGGAATATCTGATACACTGAACACTACCAAGTCAGCAGCTCAGCATGCAAAAGGAATGAAAAGTTCTGCAGTGTCACAATAGGTGATGTACTGTAGTCATCATGTGAGAGAGCCAAGCTGAAAGAATGGTTCCTGATGTGACTGGTGAGCCATATGGATATTAGCAAGGCATGCATTGATACATGGATATCAGAATGTAAAGGAAAAGGGGGGAAACTGTTTTAATCCCTCGAGGGGATATCCCCTCGTTCTTTGTATGTCACTTAAATGGTAATAAAAAAATTTAAAAAAATTAGGAAGGTGTATTAACATGTGATATAACACTCCAAAAACATACAAGTTCAAATTCAACTTCTATATTTCGTAACGAAAATAACAAATTGAACCGCAGCTAGTTAACGTATATTCAGAGTCAAATTTGTTTTTTTCGTTGCGAGATGTAGAAGTTGAATTTTTACTTGCATGTTTGTGGAGTGATATATCACATATTAATACATCTTCTTAACTTTTTTTAAATTTTTTTATAACCATTTGAGTGACATGCAAACATATCCCTCGAGTGATCAAAATCCTCTTCCGGAAAAGGGCCAAAAAAGAAAAAAAGGCAGTGACCTTTGCAGCTGTTGCTGCTGCTGGTGGTGGTGTAGCAGCAGCAGTGAGCCCTTTGCATGTTTTGATGAGGAGTGGCATCTGCAATAGGGTCCATTGCACTCATGATGATGATCCTGCAGCTGCATATCTGTCCAAATTTGCATGCCTCCTGCAAATGTTTGCTCCTGATCATCCATCTGCTGAATGCCTGCTCACAAGATTATCAAAAAACATTTTCATTCATAGTACTCCTAGGTGAAAGTGTGCATGCATGAAGAATAGGAGTAAGTACTACCACAAGCTTTTGTAGCATTCCTTTGCTATTTGGAAGCTTTTTTCTGTAGGACACAGAATATACATACATATGCATGGTTGTTAAACAGTGTGCCAAACAACTAGGCAAGCACAACTATCTGAAACATACTTATTGTTCTTTGAAATAATGTTGTACTACCTCCATGTATTGTGCATGGAAGAAGTGTGCATAATTATGAGCTTATGATTATTAGCATCATCAGTAGAAAGGAATATATGAGTTTTTTCTTTGATAATGCTTGCATTAATAGGGTACATAGTTACTCCCTCCGTATAAGAATATAGTAATCCAGTGTTTGATTAGACACATCCACCTATCCAGATTCGTAGTAATATAACACATCTAATCTAGTACTAAGTTATTATATTTTAAATAGATGGATTATCTCACAGTACAATAATGTCTATCTAGGATACAGTCCTACATATGTCTAACTGCAGGTCCATTACATGAAACACAAGATTAGACTTGTTAATTAATACACTGGACTGTAGGAGTACCTTGCATACCTAGGTCATCATTCCTCATGTTTCTGTACATCTGCTTTGAACATAATAACATCATTAACTACTGATATACCAAGAGCATCTTAGAAAAATAAGAGACTCAATACCCAATGAAACATATATTTTACCAAGAACAATACATATACTGTAAGAAACTGAAGAAAATATATAGTACGCACACAAACCTGCAGATGGCTTTTGACATGAGATATAGTGAGTCCTCCCACTCCCATCAGCTGAAGAACTCGCTTAGGTGTAGCCTCTGAATCAATCACGTAGGATCGATATACAAATGCACATTGCAAAGCACACAAACTACTAGTTAATTAACAATCAACCATAGTATTAATCACTACCTGAACGACAGAAAGAAAAGAAAGAGAAGTGACAGCAAAACACATATATACTCCTAGATCAGAACAAGAAGAGACTGAATGTCTGAAGAACGTACTGTGCTGGCCTCCAAGCTTGTGAATGGCATGAACAAAGCAGTGATGGAGATCAGGCGTCCATCTCAGGCGAGGCACCTTCGATCTGTTGTACTGCCTCACTCCTTCGATCCTCTCCCTCCTCACCATTGTCCCTCTCACCATGGCCAT
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| CDS seq | ATGGCCATGGTGAGAGGGACAATGGTGAGGAGGGAGAGGATCGAAGGAGTGAGGCAGTACAACAGATCGAAGGTGCCTCGCCTGAGATGGACGCCTGATCTCCATCACTGCTTTGTTCATGCCATTCACAAGCTTGGAGGCCAGCACAAGGCTACACCTAAGCGAGTTCTTCAGCTGATGGGAGTGGGAGGACTCACTATATCTCATGTCAAAAGCCATCTGCAGATGTACAGAAACATGAGGAATGATGACCTAGGTATGCAAGTGCAATTTCTGCAGGAGCACAAGGCGACGCCACCACCGGAGAACGGCGCGATCAGGCACGGGAGGAAGGCGAGGCGTACGACGGCGGCGGCAGAGGAGGAGGAGCGTGACGGCGACGGCGACGAGCTCTCGCTGTCACTGACGCTGGACTCGGGGCTCAGCTGCCGGAGCAGCGGCGGCGCCGGCGCATACTGCTGCAGCGAAGGCAGCAGCAGCAACTGGCTGATCTCGTCGCCGTCGTCGACGACGAGCCTCGTCGCCGGTGGCTGCTCGCGGCGGAGTACTCCGGCCATGCTTAGCAGCGTCGTCAGCTTGGACCTGTCCTTGTGA
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| Protein seq | MAMVRGTMVRRERIEGVRQYNRSKVPRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRNMRNDDLGMQVQFLQEHKATPPPENGAIRHGRKARRTTAAAEEEERDGDGDELSLSLTLDSGLSCRSSGGAGAYCCSEGSSSNWLISSPSSTTSLVAGGCSRRSTPAMLSSVVSLDLSL |
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| Function | Putative Myb family transcription factor At1g14600 [UniProtKB/Swiss-Prot:Q700D9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0018340 | OsLima_10g0018340.01 | Chr10 | 23350156 | 23354676 | - | NAM | ||
| CDS seq | ATGGCCATGGTGAGAGGGACAATGGTGAGGAGGGAGAGGATCGAAGGAGTGAGGCAGTACAACAGATCGAAGGTGCCTCGCCTGAGATGGACGCCTGATCTCCATCACTGCTTTGTTCATGCCATTCACAAGCTTGGAGGCCAGCACAAGGCTACACCTAAGCGAGTTCTTCAGCTGATGGGAGTGGGAGGACTCACTATATCTCATGTCAAAAGCCATCTGCAGATGTACAGAAACATGAGGAATGATGACCTAGGTATGCAAGTGCAATTTCTGCAGGAGCACAAGGCGACGCCACCACCGGAGAACGGCGCGATCAGGCACGGGAGGAAGGCGAGGCGTACGACGGCGGCGGCAGAGGAGGAGGAGCGTGACGGCGACGGCGACGAGCTCTCGCTGTCACTGACGCTGGACTCGGGGCTCAGCTGCCGGAGCAGCGGCGGCGCCGGCGCATACTGCTGCAGCGAAGGCAGCAGCAGCAACTGGCTGATCTCGTCGCCGTCGTCGACGACGAGCCTCGTCGCCGGTGGCTGCTCGCGGCGGAGTACTCCGGCCATGCTTAGCAGCGTCGTCAGCTTGGACCTGTCCTTGTGA
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| Protein seq | MAMVRGTMVRRERIEGVRQYNRSKVPRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRNMRNDDLGMQVQFLQEHKATPPPENGAIRHGRKARRTTAAAEEEERDGDGDELSLSLTLDSGLSCRSSGGAGAYCCSEGSSSNWLISSPSSTTSLVAGGCSRRSTPAMLSSVVSLDLSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0463400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0463400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018650 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0013860 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018430 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018720 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0348300 | RBH | 0.078195 | 0 | 0.1851385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018580 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0373500 | RBH | 0.2147255 | 0.0134145 | 3.379138 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0018280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018380 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018660 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018730 | RBH | 0.0 | 0.0 | 0.0 |
