Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0018080 | OGI:10063850 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:23144627-23145565 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACAACCCAAGATCCAAGGAGCACATCTTCTTCCCCGCCGTCGACGACGACGTCGAGGACGACGGCGAGGGGAGCTGCAGGAGAGACAACGCTGCCGTCCGGCTCGCCGCTCCGGCGATGTCGTCGTCGTCGTCCATGGCCGCCGGGCAGTCGAGGTTCACCCCGAACAGCCGGACACGCTTCGGCCTTGTCGTCGTCGCCGCCTCCTGCACCGCCGAGGCGGCCGCGACGTGCACCGGCACCGACTTGAGCACCACAGCGGCCGGCACCTGCGGCCGGAGGAACAGCACGTGGCGGCTGGACGCCGGGGTGGAGCCGCCGCCGTAGCCGTAGCCGTAGCCGCCGCCATAGGCGGTGGTGTAGTCTCGCCACGGGCAAAGGGGCACGGACGGGAGCGGCGGGTGGTGTCGCTGATGATGGTGGTGCGAGTGCGACGGCGGCGCCGCCGTCGGCGGGAACATGAAGCTGCCGGCGTCCTGGCGGCGGCGGCGGAAGTCGATGAAGAGGCGGCCGCGGGCGGCGTCGCCGAGGCCGCGGCCGAACGACACGGTGTCGCCGGCGCCGAGGCGCTTCTCCTTGACGAAGCGGCTCCACCCTTTGGTCATCACGTAGCTCTGGCTGCTGTTCCAGTACGAGTACCGGAACCTCCACGCCTTCCCCGTCCTGTCCTCGAAGCTCAGCACCAGCCCCTTCCCCCCGCCGCCGCCACCGCCGCCACCACCGCCGCCGCCGGCGCCCGCCGCGGCGTCGAGCGGGAAGTACCTCTCGGCGTGCTGCTTGGGGATGACCAATCGGTTCAGCTTCCCCACGTCGCTCGGCGTCACGACCTTCTCAAACATGTGCTCCTTCTCCACCACCGCCCACGCCGCCGCCCCCCTCTCGGAATCCTCCTCACCGCCGGCGACCCTCGTCGGCGGCGAAATTGGGGTGAACTCCAT
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| CDS seq | ATGGAGTTCACCCCAATTTCGCCGCCGACGAGGGTCGCCGGCGGTGAGGAGGATTCCGAGAGGGGGGCGGCGGCGTGGGCGGTGGTGGAGAAGGAGCACATGTTTGAGAAGGTCGTGACGCCGAGCGACGTGGGGAAGCTGAACCGATTGGTCATCCCCAAGCAGCACGCCGAGAGGTACTTCCCGCTCGACGCCGCGGCGGGCGCCGGCGGCGGCGGTGGTGGCGGCGGTGGCGGCGGCGGGGGGAAGGGGCTGGTGCTGAGCTTCGAGGACAGGACGGGGAAGGCGTGGAGGTTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGATGACCAAAGGGTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGGCGCCGGCGACACCGTGTCGTTCGGCCGCGGCCTCGGCGACGCCGCCCGCGGCCGCCTCTTCATCGACTTCCGCCGCCGCCGCCAGGACGCCGGCAGCTTCATGTTCCCGCCGACGGCGGCGCCGCCGTCGCACTCGCACCACCATCATCAGCGACACCACCCGCCGCTCCCGTCCGTGCCCCTTTGCCCGTGGCGAGACTACACCACCGCCTATGGCGGCGGCTACGGCTACGGCTACGGCGGCGGCTCCACCCCGGCGTCCAGCCGCCACGTGCTGTTCCTCCGGCCGCAGGTGCCGGCCGCTGTGGTGCTCAAGTCGGTGCCGGTGCACGTCGCGGCCGCCTCGGCGGTGCAGGAGGCGGCGACGACGACAAGGCCGAAGCGTGTCCGGCTGTTCGGGGTGAACCTCGACTGCCCGGCGGCCATGGACGACGACGACGACATCGCCGGAGCGGCGAGCCGGACGGCAGCGTTGTCTCTCCTGCAGCTCCCCTCGCCGTCGTCCTCGACGTCGTCGTCGACGGCGGGGAAGAAGATGTGCTCCTTGGATCTTGGGTTGTGA
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| Protein seq | MEFTPISPPTRVAGGEEDSERGAAAWAVVEKEHMFEKVVTPSDVGKLNRLVIPKQHAERYFPLDAAAGAGGGGGGGGGGGGGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGLGDAARGRLFIDFRRRRQDAGSFMFPPTAAPPSHSHHHHQRHHPPLPSVPLCPWRDYTTAYGGGYGYGYGGGSTPASSRHVLFLRPQVPAAVVLKSVPVHVAAASAVQEAATTTRPKRVRLFGVNLDCPAAMDDDDDIAGAASRTAALSLLQLPSPSSSTSSSTAGKKMCSLDLGL |
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| Function | Putative B3 domain-containing protein Os10g0537100 [UniProtKB/Swiss-Prot:Q8LNN8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0018080 | OsLima_10g0018080.01 | Chr10 | 23144627 | 23145565 | - | NAM | ||
| CDS seq | ATGGAGTTCACCCCAATTTCGCCGCCGACGAGGGTCGCCGGCGGTGAGGAGGATTCCGAGAGGGGGGCGGCGGCGTGGGCGGTGGTGGAGAAGGAGCACATGTTTGAGAAGGTCGTGACGCCGAGCGACGTGGGGAAGCTGAACCGATTGGTCATCCCCAAGCAGCACGCCGAGAGGTACTTCCCGCTCGACGCCGCGGCGGGCGCCGGCGGCGGCGGTGGTGGCGGCGGTGGCGGCGGCGGGGGGAAGGGGCTGGTGCTGAGCTTCGAGGACAGGACGGGGAAGGCGTGGAGGTTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGATGACCAAAGGGTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGGCGCCGGCGACACCGTGTCGTTCGGCCGCGGCCTCGGCGACGCCGCCCGCGGCCGCCTCTTCATCGACTTCCGCCGCCGCCGCCAGGACGCCGGCAGCTTCATGTTCCCGCCGACGGCGGCGCCGCCGTCGCACTCGCACCACCATCATCAGCGACACCACCCGCCGCTCCCGTCCGTGCCCCTTTGCCCGTGGCGAGACTACACCACCGCCTATGGCGGCGGCTACGGCTACGGCTACGGCGGCGGCTCCACCCCGGCGTCCAGCCGCCACGTGCTGTTCCTCCGGCCGCAGGTGCCGGCCGCTGTGGTGCTCAAGTCGGTGCCGGTGCACGTCGCGGCCGCCTCGGCGGTGCAGGAGGCGGCGACGACGACAAGGCCGAAGCGTGTCCGGCTGTTCGGGGTGAACCTCGACTGCCCGGCGGCCATGGACGACGACGACGACATCGCCGGAGCGGCGAGCCGGACGGCAGCGTTGTCTCTCCTGCAGCTCCCCTCGCCGTCGTCCTCGACGTCGTCGTCGACGGCGGGGAAGAAGATGTGCTCCTTGGATCTTGGGTTGTGA
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| Protein seq | MEFTPISPPTRVAGGEEDSERGAAAWAVVEKEHMFEKVVTPSDVGKLNRLVIPKQHAERYFPLDAAAGAGGGGGGGGGGGGGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGLGDAARGRLFIDFRRRRQDAGSFMFPPTAAPPSHSHHHHQRHHPPLPSVPLCPWRDYTTAYGGGYGYGYGGGSTPASSRHVLFLRPQVPAAVVLKSVPVHVAAASAVQEAATTTRPKRVRLFGVNLDCPAAMDDDDDIAGAASRTAALSLLQLPSPSSSTSSSTAGKKMCSLDLGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0537100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39190 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0537100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018360 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018780 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018140 | RBH | 0.0 | 2.374296 | 0.810175 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018690 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018420 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0345300 | RBH | 0.206656 | 1.07224 | 0.1053275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018320 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0370100 | RBH | 0.196246 | 0.543404 | 0.71599 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0001750 | RBH | 0.082886 | 0.152437 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018120 | RBH | 0.0 | 0.0 | 0.219187 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018640 | RBH | 0.0 | 1.163796 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018360 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018420 | RBH | 0.0 | 1.610384 | 0.412678 |
