Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0016230 | OGI:10060120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:21546727-21553120 | ||||||||
| Gene Symbol | VALRS3, OsValRS3, ValRS3 | ||||||||||
| DNA seq | ATGTTGTGTGTTGGTGGCTTGGTGCAGCCACTCGATGAGAAGGAGCTGGAAAGGAAGCTGAAGAAAGATCAGAAGGTACTCACTCTAGTAGGATTGCTGTTATGTACTTCTGTTAACAATTCAAAGGAATCGTGTCCAGTTCACCAGTTGTTTGGTGTATGAATAAGTGTGTTATGTATGTAATAGGCAAGAGAGAAGGAGGAGAAGAGGCTCAAGGCGAAGCAAAAGGAGGCGATTAGGCTACAGGTGTTAAAAATAATCCCTGCTCAGATAAATGTGTTTTACTGTCAATTCTTTGTATTGATGTGGTTGTCTGCAGGCACAAGCAGCATCTGATGAAACAAAGAAGAGCGACAAGAAACAAAAGAAGAAAGGCACACCGGATGAGAATCCTGAGGATTTCGTCGATCCGGATACTCCTGCTGGGCAGAAGAAGCTGCTTGCTTCTCAAATGGCCAAACAATATAATCCAGCTGCTGTTGAGAAATCGTACCGCCTCTCTTGCTTTATTCCTCGATTTAATTTATTTTCAATGAGGATATATCTTTCATATCGTTAGAACCTTAGGAATTCATAACATGAAATTTCTCACTTATCTGTCCTTTTTTCCGGTATGTTGTTTTCATGTAGATGGTATTCTTGGTGGGAATCATCTCAATATTTTGTAGCAGATGCGACGAGTTCTAAACCACCATTTGTAATAGTAAGTCCACCATAATGCAAAGAGTGCATGATTATATATTTGTATTCAGGATAAATACTTTATCATGATTACTGTGTGAGTAGTATGTCCTATATGAAATACACAATTGAAGCTTTATTTCCACTTCTCATTTTGCATTTGCAATGTTTATTTTTCCAGATCTTGCCACCTCCTAATGTAACTGGGGTCCTTCATATAGGCCATGCGATTACAGTAGCAATTGAGGTATTTATTGATTGATTCTCCTGTTTATTCATTGGCCATATAAGCATCAGTATTGATGTCTTTTTGGTTGTTGCATCGTGAACAATTCAGGATGCTATGATTCGCTGGCGGAGGATGTCGGGCTATAGCGCTTTGTGGGTTCCTGGAATGGACCATGCTGGCATAGCTACACAGGTCTGTCATGCATATAACATATATATGGTATCTGTTTCTAACATATAACCTCTACAGGAATTATTGTTAACTTGAATACAAATTGACTTTTGCTGAAACATCACATTGATTGTTAACCAACTTTCTGTTTTAGTTTTTAAGGGTAGCAGGCTTTATGTAACAAAATTTCTCTTCATATCAGGTGGTTGTGGAAAAAAGGCTTATGCGTGACAGAAACCTGTCAAGACATGATCTGGGGCGTGATAAATTTCTATTGGAGGTAATCATTTTTTTCTTACCTATTGCATATTGTATTAACTTCACAGTTAGTTTCATTTTTATTTATTTTTTTCATTCTTCAATCTTCTTGGCAGGTCCTCCAATGGAAAGATCAGCATGGTGGTACCATATTGAAACAATTACGTACACTTGGAGCCTCACTTGATTGGTCACGCGAGGTATAATTTGTTTTGATTTCCCCTAAGGTTGTAGACAGCCAGAGGAGAGCACCATTTATATCTAAGCAATATATTTTGTTGAATAAATATGACAAAACTCCAGACATTATGGTTCAGATTGCACAAAACCACATGTTTTTTGGCATGTTGCACATAACCGGCATTATGGTCCTATAATTGGTTAATGGTGTGGTTTAGTGAAATCTTAATACCATAATATTTGTGGTTATGTGCGATGTGCCAAAACTCTGAGTTTTGTGCAACTTGAACCATACCTGGGGTATATAAAATGTATTCATATATTGTTTTGCTTTGTTGTTAAATAGTATTGATTTTCTTGCAACTTGTTTCAGTGTTTTACAATGGATGAGAAGAGATCAAAAGCTGTAACAGAAGCTTTTATCAGACTGCACAAAGAAGGCCTAATATATAGGTCAGTGTCAAAATATCGTTGAATGTGTAGTTTAACTTTCTATATTTGTTCTGCTTCAGTAATTTTCTATTCGAATTGTGTGTTTCTTAGTTTATGTTTTCTTACTGCAGCACATCTTACTTTGTTAATTCTGTATGATTTACTTGCAGGGATAATCGCATTGTGAACTGGGATTGCTCACTTCGTACTGCAATTTCAGATATTGAGGTATACGATACTTCTAATATGATTAACATTTTGATTTGTTGATGAGGAGGATTGTATTTTTATGTTTTGCTCGCTACTTTTCAGGTTGACTATTGTGAACTTACAGAAGAGACTTTGTTAGAGGTCCCTGGATGTAGCACTCTTGTCCAGTTCGGTGTTATAATAAATTTTGCTTATCCTCTAGAGGAAGGGTTGGGTGAAATTATCGTTGCAACAACAAGAATAGAAACAATGCTTGGTGATACTGCAATAGCTGTTCATCCTCAGGATGAAAGATACAAGCGTTTGCATGGAAAACATGCTCTCCATCCCTTTAATGGCCGGAAACTCAAAATAATTTGTGACTCCAAGTTAGTGGATCCCAGTTTTGGTACAGGAGCTGTCAAGGTAAGTGTACTCACTGAAGGAGTGTCTCGTATATCTTAATTTTATTTTCCATACCTGGATTGATTATATTCATCAATCAGCAAGCTCTTATTTCTTTTTTCTATTTTGCTGTTGTTTCCATACAGATCACGCCAGCTCATGATCTTGATGACTTCAACACTGGCAAACGACATAAACTTGAGTTCATTAATATTTTCACAGATGATGGGAACATAAATGAAAACGGAGGTCCACAATTTGAAGGAATGCCACGTTTCACTGCTCGGGCTGCTATTATTGATGCACTAAAGGCAAAGGTATTATTAGATTATTTAGTTTTCCATTTCCTTTTCTAATTAATTCCTCGATGGTATTGTAGTCTCTCACAATTTCAGATGGTTTATTATCATGCTTTTTATGGAATTTATTTTACATTTATCTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCAATGGTGCATTGATGTATTGTCACTTTGTCACTTTATTAGTTTCTCACAATGAAATACTATTGTTCTCTATGAAAAACATTATGATATTGGGATACTGTTGAGTGTTGCTATTATGTTCTGAAAGCATCTAGAGTATGGTTAAGCTATGAATATACCGTTCAGCTTTGTTCTTGAGTTGGCATACTGATTAATCTTTTAGTTTTATTTGGAAATTTCATCTTGTTGCCTGCTTAACTATCTTTCATGTGCCACCAGTACTTTCCTGTATTCTATTGTCTTAGAAGAAATGCCAAATTACAATCATTTACACTTTTTCAATTAAGGGTCTATACAGAGGCACAGAAAATAATAAGATGCGCTTGGGACGTTGTTCAAGAACTAAAGATATTGTGGAGCCAATGATGAAGCCCCAATGGTTTGTCGATTGTAGTACTATGGCAAAGGCAGCTCTTGATGCTGTGAAAACTAAAAGGATCGAGATCATTCCAATACAATACGAGCAAGACTGGTATAGGTATATCCTATTTTCTTTTCTTTAGGAAAACATAATTGGTAAATCGCAACATTGGATAGTAGAATAACCCATTCACTTCTACTGTTCTGTGGTAACAGATGGCTTGAAAACATACGTGATTGGTGTATTTCAAGACAGCTTTGGTGGGGACACCGTATACCAGCTTGGTATGTAACGCTAGAAGATGATGAGGAGAAAGACATAGGTTCTTACATTGATCACTGGATAATTGCAAGAAATGAAAGTGATGCAATCCTGGAGGCAAAGCAGAGGTATCCAGGGAAAAATTATAAGTTAGACCAAGATCCTGATGTGCTGGATACATGGTTTTCATCTGGTCTTTTCCCATTGTCTGTGCTTGGTTGGCCAGACAGCACAGCTGATCTTAGTTCATTCTACCCTACTTCTGTACTTGAAACTGGACTGGATATCCTCTTCTTTTGGGTAGCACGGATGGTGATGATGGGAATGCTACTTGGTGGTGATGTGCCATTTCAGAAGGTAATATTTAGGTTATTTCATTCTTAAATAGTTCTTGGTCAAATCTGTTAGATTCTAGTGATAGTGATAGTTCAGTATGATTGCCTTCTAAAATTATTTGATATCATTTTAAGTTTGGTAACTTAGCTTTTGGTCCTTGTCGAATCATGTTAACTTTTCTATGCTAAAAATGAATCAATCATTAACACGCGGTTAGAAACTTCACAAGTACTAGTAATTTTTAAACCGTGACTCATGACTGCTTATCTGTCTCAGGTTTACTTGCATCCAATTATCCGCGATCCACATGGCCGCAAAATGGCGAAGTGCCTAGGAAATGTCATTGATCCCATTGATGTAATAAATGGTATATCACTTGAAGATCTCGGGAAAAAGTTGGAACATGGCAATCTTGATCCAAGTGAGTTAGAAAAGGCGAAAGAAGGTCAGAAGAAGGATTTCCCTAATGGCATTCCAGAGTGTGGTACTGATGCCCTTCGTTTTGCCCTGATCTCCTACACTTCTCAGGTAAATTTTCCCACCAGCTTTTGTTGTTCTTTGTACTGTTAGTAAAAATTTCTTGTAGTAACATTTCTTGTCTTGTTCAGTCTGACAAAATAAATCTGGATATCAAGAGAGTGCACGGATACAGACAATGGTGCAATAAACTGTGGAATGCCGTCCGTTTTGCCATGAACAAGCTTGGAGATCAATACACTCCACCAGCGGCTATTGCGTTGTGTTCTATGCCACCTCTCTGCAAATGGATACTCTCAGCACTTAACAAGGCTGTTGGCAAGACTGTTTCATCGATGGAAGCATGTAAATTCTCCGAGGCCACATCGTCTATGTACTCTTGGTGGCAGTACCAACTTTGCGATGTATTTATAGAAGCCGTAAAACCTTACTTCAATCAATCTCAAGAGTTGGAATCTGAAAGAGGTGCTTGTCGTGATACATTATGGATATGTCTGGATACCGGTTTGCGGTTGCTCCACCCGTTCATGCCTTACATAACGGAGGAGCTTTGGCAGCGCCTTCCTCAGCCTAAAGAGGCTTGTAGGAAAGATTCCATAATGATATCTGAGTACCCCTCAGTTGTTCAGGTAAATACATACTTCGTACTGACTTTGGAAAAAAAAATGAATTCTTCTAGCTTGTAACTTTTCAGAGATCAGTATGGTAGAGTCCTATTGCATAACGATTAAAAGCAAACCACTGTAAATTCTAGCACTATAATCAATATATGTAAAAATGATGAAGAAATGATTAATGCATTGTCTGCCTCAGTTGGTGAGACCATAGATTTAAGAAATTCTGCAATCCTATGAAAAAAAAAATTCTGCAATGCCTATTTTGACTAGAGGTTTTCTTTTGACGGATGACAGGAATGGACAAATGATCAAGTTGAAAATGAAATGGAGACTGTGTTGGATTCTGTGAACAAGCTAAGATCTCTTCGGCCACATACAGATATACATGAAAGGTATGCTTATGTTCACCAGATGTATATTCTTTTGGTGTGCTTCAAGACTGTCACTTCCTTTTTATAGTTTTATTCTTATTTTGATTCATAAGAATTTGTTCATTTTGAAGCTAATACCTTCTGCCCTATTTTCATCTGGACAGACGGCCTGCTTTTATGCTCTGCCGTGGGGTAGACATTGCTGCCATTATTCAGTGCTACCAGGCGCAGATTTCAACTCTTGCTTCTGTTTCATCTCTTAAGGTTTGCTCGGTCTTATACCTCTCTGGCTCTCTCAACTCGGCCACTCACCTCAAGTCACTGTTTATGAATGCCTTGTTCTTGATGGATAATGGCATAATTTCTATTTCTATTTCAATTCAATTCACTCGAGTTTTGTCTACAGATGTGCTTATATTTTTGCTAATATATTTTGTCTAAAATGCCTAAAAAGCCAAAAAAAAAAGGAGGGAAAAAACTGATTCAAAGGGAACTTTTGCAGATACTGACAGAGGATGATCCAACTCCACCCAACTGTGCCACAAATATTGTCAACAAAGATCTATCCGTATACCTCCAGCTACGAGGAGCTCTAAACACTGAAGCTGAGCGTGAGAAGCTAAGGAAAAAGCGAGATGAGATTCAAAAGTAAGTGCCCTGTTAAACCATCTGAACATAAATTTGAACGAACCAATTTGAACATAAATGAAATTTGTAGTTTTGTTAGTGGTAAGACGTTCTATTTCCCACTGTAATTGCAGGCAACACGACACCTTGTCGCAGAAAATGAATGCCTCAGGCTATCGCGAGAAGGCTCCTCAGAGCAAGCAAGATGAGGACATGAAAAAGATTGCTGCATTACTGGAGGAACTTGAGATCATTAGAGAAGCCGAAAGTGAACTAGAATCAAACAACTGA
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| CDS seq | ATGTTGTGTGTTGGTGGCTTGGTGCAGCCACTCGATGAGAAGGAGCTGGAAAGGAAGCTGAAGAAAGATCAGAAGGCAAGAGAGAAGGAGGAGAAGAGGCTCAAGGCGAAGCAAAAGGAGGCGATTAGGCTACAGGCACAAGCAGCATCTGATGAAACAAAGAAGAGCGACAAGAAACAAAAGAAGAAAGGCACACCGGATGAGAATCCTGAGGATTTCGTCGATCCGGATACTCCTGCTGGGCAGAAGAAGCTGCTTGCTTCTCAAATGGCCAAACAATATAATCCAGCTGCTGTTGAGAAATCATGGTATTCTTGGTGGGAATCATCTCAATATTTTGTAGCAGATGCGACGAGTTCTAAACCACCATTTGTAATAATCTTGCCACCTCCTAATGTAACTGGGGTCCTTCATATAGGCCATGCGATTACAGTAGCAATTGAGGATGCTATGATTCGCTGGCGGAGGATGTCGGGCTATAGCGCTTTGTGGGTTCCTGGAATGGACCATGCTGGCATAGCTACACAGGTGGTTGTGGAAAAAAGGCTTATGCGTGACAGAAACCTGTCAAGACATGATCTGGGGCGTGATAAATTTCTATTGGAGGTCCTCCAATGGAAAGATCAGCATGGTGGTACCATATTGAAACAATTACGTACACTTGGAGCCTCACTTGATTGGGATAATCGCATTGTGAACTGGGATTGCTCACTTCGTACTGCAATTTCAGATATTGAGGTTGACTATTGTGAACTTACAGAAGAGACTTTGTTAGAGGTCCCTGGATGTAGCACTCTTGTCCAGTTCGGTGTTATAATAAATTTTGCTTATCCTCTAGAGGAAGGGTTGGGTGAAATTATCGTTGCAACAACAAGAATAGAAACAATGCTTGGTGATACTGCAATAGCTGTTCATCCTCAGGATGAAAGATACAAGCGTTTGCATGGAAAACATGCTCTCCATCCCTTTAATGGCCGGAAACTCAAAATAATTTGTGACTCCAAGTTAGTGGATCCCAGTTTTGGTACAGGAGCTGTCAAGATCACGCCAGCTCATGATCTTGATGACTTCAACACTGGCAAACGACATAAACTTGAGTTCATTAATATTTTCACAGATGATGGGAACATAAATGAAAACGGAGGTCCACAATTTGAAGGAATGCCACGTTTCACTGCTCGGGCTGCTATTATTGATGCACTAAAGGCAAAGGGTCTATACAGAGGCACAGAAAATAATAAGATGCGCTTGGGACGTTGTTCAAGAACTAAAGATATTGTGGAGCCAATGATGAAGCCCCAATGGTTTGTCGATTGTAGTACTATGGCAAAGGCAGCTCTTGATGCTGTGAAAACTAAAAGGATCGAGATCATTCCAATACAATACGAGCAAGACTGGTATAGCACAGCTGATCTTAGTTCATTCTACCCTACTTCTGTACTTGAAACTGGACTGGATATCCTCTTCTTTTGGGTAGCACGGATGGTGATGATGGGAATGCTACTTGGTGGTGATGTGCCATTTCAGAAGGTTTACTTGCATCCAATTATCCGCGATCCACATGGCCGCAAAATGGCGAAGTGCCTAGGAAATGTCATTGATCCCATTGATGTAATAAATGGTATATCACTTGAAGATCTCGGGAAAAAGTTGGAACATGGCAATCTTGATCCAAGTGAGTTAGAAAAGGCGAAAGAAGGTCAGAAGAAGGATTTCCCTAATGGCATTCCAGAGTGTGGTACTGATGCCCTTCGTTTTGCCCTGATCTCCTACACTTCTCAGTCTGACAAAATAAATCTGGATATCAAGAGAGTGCACGGATACAGACAATGGTGCAATAAACTGTGGAATGCCGTCCGTTTTGCCATGAACAAGCTTGGAGATCAATACACTCCACCAGCGGCTATTGCGTTGTGTTCTATGCCACCTCTCTGCAAATGGATACTCTCAGCACTTAACAAGGCTGTTGGCAAGACTGTTTCATCGATGGAAGCATGTAAATTCTCCGAGGCCACATCGTCTATGTACTCTTGGTGGCAGTACCAACTTTGCGATGTATTTATAGAAGCCGTAAAACCTTACTTCAATCAATCTCAAGAGTTGGAATCTGAAAGAGGTGCTTGTCGTGATACATTATGGATATGTCTGGATACCGGTTTGCGGTTGCTCCACCCGTTCATGCCTTACATAACGGAGGAGCTTTGGCAGCGCCTTCCTCAGCCTAAAGAGGCTTGTAGGAAAGATTCCATAATGATATCTGAGTACCCCTCAGTTGTTCAGGAATGGACAAATGATCAAGTTGAAAATGAAATGGAGACTGTGTTGGATTCTGTGAACAAGCTAAGATCTCTTCGGCCACATACAGATATACATGAAAGACGGCCTGCTTTTATGCTCTGCCGTGGGGTAGACATTGCTGCCATTATTCAGTGCTACCAGGCGCAGATTTCAACTCTTGCTTCTGTTTCATCTCTTAAGATACTGACAGAGGATGATCCAACTCCACCCAACTGTGCCACAAATATTGTCAACAAAGATCTATCCGTATACCTCCAGCTACGAGGAGCTCTAAACACTGAAGCTGAGCGTGAGAAGCTAAGGAAAAAGCGAGATGAGATTCAAAAGCAACACGACACCTTGTCGCAGAAAATGAATGCCTCAGGCTATCGCGAGAAGGCTCCTCAGAGCAAGCAAGATGAGGACATGAAAAAGATTGCTGCATTACTGGAGGAACTTGAGATCATTAGAGAAGCCGAAAGTGAACTAGAATCAAACAACTGA
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| Protein seq | MLCVGGLVQPLDEKELERKLKKDQKAREKEEKRLKAKQKEAIRLQAQAASDETKKSDKKQKKKGTPDENPEDFVDPDTPAGQKKLLASQMAKQYNPAAVEKSWYSWWESSQYFVADATSSKPPFVIILPPPNVTGVLHIGHAITVAIEDAMIRWRRMSGYSALWVPGMDHAGIATQVVVEKRLMRDRNLSRHDLGRDKFLLEVLQWKDQHGGTILKQLRTLGASLDWDNRIVNWDCSLRTAISDIEVDYCELTEETLLEVPGCSTLVQFGVIINFAYPLEEGLGEIIVATTRIETMLGDTAIAVHPQDERYKRLHGKHALHPFNGRKLKIICDSKLVDPSFGTGAVKITPAHDLDDFNTGKRHKLEFINIFTDDGNINENGGPQFEGMPRFTARAAIIDALKAKGLYRGTENNKMRLGRCSRTKDIVEPMMKPQWFVDCSTMAKAALDAVKTKRIEIIPIQYEQDWYSTADLSSFYPTSVLETGLDILFFWVARMVMMGMLLGGDVPFQKVYLHPIIRDPHGRKMAKCLGNVIDPIDVINGISLEDLGKKLEHGNLDPSELEKAKEGQKKDFPNGIPECGTDALRFALISYTSQSDKINLDIKRVHGYRQWCNKLWNAVRFAMNKLGDQYTPPAAIALCSMPPLCKWILSALNKAVGKTVSSMEACKFSEATSSMYSWWQYQLCDVFIEAVKPYFNQSQELESERGACRDTLWICLDTGLRLLHPFMPYITEELWQRLPQPKEACRKDSIMISEYPSVVQEWTNDQVENEMETVLDSVNKLRSLRPHTDIHERRPAFMLCRGVDIAAIIQCYQAQISTLASVSSLKILTEDDPTPPNCATNIVNKDLSVYLQLRGALNTEAEREKLRKKRDEIQKQHDTLSQKMNASGYREKAPQSKQDEDMKKIAALLEELEIIREAESELESNN |
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| Function | Valine--tRNA ligase, mitochondrial 1 [UniProtKB/Swiss-Prot:P93736] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0016230 | OsLima_10g0016230.01 | Chr10 | 21546727 | 21553120 | + | NAM | ||
| CDS seq | ATGTTGTGTGTTGGTGGCTTGGTGCAGCCACTCGATGAGAAGGAGCTGGAAAGGAAGCTGAAGAAAGATCAGAAGGCAAGAGAGAAGGAGGAGAAGAGGCTCAAGGCGAAGCAAAAGGAGGCGATTAGGCTACAGGCACAAGCAGCATCTGATGAAACAAAGAAGAGCGACAAGAAACAAAAGAAGAAAGGCACACCGGATGAGAATCCTGAGGATTTCGTCGATCCGGATACTCCTGCTGGGCAGAAGAAGCTGCTTGCTTCTCAAATGGCCAAACAATATAATCCAGCTGCTGTTGAGAAATCATGGTATTCTTGGTGGGAATCATCTCAATATTTTGTAGCAGATGCGACGAGTTCTAAACCACCATTTGTAATAATCTTGCCACCTCCTAATGTAACTGGGGTCCTTCATATAGGCCATGCGATTACAGTAGCAATTGAGGATGCTATGATTCGCTGGCGGAGGATGTCGGGCTATAGCGCTTTGTGGGTTCCTGGAATGGACCATGCTGGCATAGCTACACAGGTGGTTGTGGAAAAAAGGCTTATGCGTGACAGAAACCTGTCAAGACATGATCTGGGGCGTGATAAATTTCTATTGGAGGTCCTCCAATGGAAAGATCAGCATGGTGGTACCATATTGAAACAATTACGTACACTTGGAGCCTCACTTGATTGGGATAATCGCATTGTGAACTGGGATTGCTCACTTCGTACTGCAATTTCAGATATTGAGGTTGACTATTGTGAACTTACAGAAGAGACTTTGTTAGAGGTCCCTGGATGTAGCACTCTTGTCCAGTTCGGTGTTATAATAAATTTTGCTTATCCTCTAGAGGAAGGGTTGGGTGAAATTATCGTTGCAACAACAAGAATAGAAACAATGCTTGGTGATACTGCAATAGCTGTTCATCCTCAGGATGAAAGATACAAGCGTTTGCATGGAAAACATGCTCTCCATCCCTTTAATGGCCGGAAACTCAAAATAATTTGTGACTCCAAGTTAGTGGATCCCAGTTTTGGTACAGGAGCTGTCAAGATCACGCCAGCTCATGATCTTGATGACTTCAACACTGGCAAACGACATAAACTTGAGTTCATTAATATTTTCACAGATGATGGGAACATAAATGAAAACGGAGGTCCACAATTTGAAGGAATGCCACGTTTCACTGCTCGGGCTGCTATTATTGATGCACTAAAGGCAAAGGGTCTATACAGAGGCACAGAAAATAATAAGATGCGCTTGGGACGTTGTTCAAGAACTAAAGATATTGTGGAGCCAATGATGAAGCCCCAATGGTTTGTCGATTGTAGTACTATGGCAAAGGCAGCTCTTGATGCTGTGAAAACTAAAAGGATCGAGATCATTCCAATACAATACGAGCAAGACTGGTATAGCACAGCTGATCTTAGTTCATTCTACCCTACTTCTGTACTTGAAACTGGACTGGATATCCTCTTCTTTTGGGTAGCACGGATGGTGATGATGGGAATGCTACTTGGTGGTGATGTGCCATTTCAGAAGGTTTACTTGCATCCAATTATCCGCGATCCACATGGCCGCAAAATGGCGAAGTGCCTAGGAAATGTCATTGATCCCATTGATGTAATAAATGGTATATCACTTGAAGATCTCGGGAAAAAGTTGGAACATGGCAATCTTGATCCAAGTGAGTTAGAAAAGGCGAAAGAAGGTCAGAAGAAGGATTTCCCTAATGGCATTCCAGAGTGTGGTACTGATGCCCTTCGTTTTGCCCTGATCTCCTACACTTCTCAGTCTGACAAAATAAATCTGGATATCAAGAGAGTGCACGGATACAGACAATGGTGCAATAAACTGTGGAATGCCGTCCGTTTTGCCATGAACAAGCTTGGAGATCAATACACTCCACCAGCGGCTATTGCGTTGTGTTCTATGCCACCTCTCTGCAAATGGATACTCTCAGCACTTAACAAGGCTGTTGGCAAGACTGTTTCATCGATGGAAGCATGTAAATTCTCCGAGGCCACATCGTCTATGTACTCTTGGTGGCAGTACCAACTTTGCGATGTATTTATAGAAGCCGTAAAACCTTACTTCAATCAATCTCAAGAGTTGGAATCTGAAAGAGGTGCTTGTCGTGATACATTATGGATATGTCTGGATACCGGTTTGCGGTTGCTCCACCCGTTCATGCCTTACATAACGGAGGAGCTTTGGCAGCGCCTTCCTCAGCCTAAAGAGGCTTGTAGGAAAGATTCCATAATGATATCTGAGTACCCCTCAGTTGTTCAGGAATGGACAAATGATCAAGTTGAAAATGAAATGGAGACTGTGTTGGATTCTGTGAACAAGCTAAGATCTCTTCGGCCACATACAGATATACATGAAAGACGGCCTGCTTTTATGCTCTGCCGTGGGGTAGACATTGCTGCCATTATTCAGTGCTACCAGGCGCAGATTTCAACTCTTGCTTCTGTTTCATCTCTTAAGATACTGACAGAGGATGATCCAACTCCACCCAACTGTGCCACAAATATTGTCAACAAAGATCTATCCGTATACCTCCAGCTACGAGGAGCTCTAAACACTGAAGCTGAGCGTGAGAAGCTAAGGAAAAAGCGAGATGAGATTCAAAAGCAACACGACACCTTGTCGCAGAAAATGAATGCCTCAGGCTATCGCGAGAAGGCTCCTCAGAGCAAGCAAGATGAGGACATGAAAAAGATTGCTGCATTACTGGAGGAACTTGAGATCATTAGAGAAGCCGAAAGTGAACTAGAATCAAACAACTGA
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| Protein seq | MLCVGGLVQPLDEKELERKLKKDQKAREKEEKRLKAKQKEAIRLQAQAASDETKKSDKKQKKKGTPDENPEDFVDPDTPAGQKKLLASQMAKQYNPAAVEKSWYSWWESSQYFVADATSSKPPFVIILPPPNVTGVLHIGHAITVAIEDAMIRWRRMSGYSALWVPGMDHAGIATQVVVEKRLMRDRNLSRHDLGRDKFLLEVLQWKDQHGGTILKQLRTLGASLDWDNRIVNWDCSLRTAISDIEVDYCELTEETLLEVPGCSTLVQFGVIINFAYPLEEGLGEIIVATTRIETMLGDTAIAVHPQDERYKRLHGKHALHPFNGRKLKIICDSKLVDPSFGTGAVKITPAHDLDDFNTGKRHKLEFINIFTDDGNINENGGPQFEGMPRFTARAAIIDALKAKGLYRGTENNKMRLGRCSRTKDIVEPMMKPQWFVDCSTMAKAALDAVKTKRIEIIPIQYEQDWYSTADLSSFYPTSVLETGLDILFFWVARMVMMGMLLGGDVPFQKVYLHPIIRDPHGRKMAKCLGNVIDPIDVINGISLEDLGKKLEHGNLDPSELEKAKEGQKKDFPNGIPECGTDALRFALISYTSQSDKINLDIKRVHGYRQWCNKLWNAVRFAMNKLGDQYTPPAAIALCSMPPLCKWILSALNKAVGKTVSSMEACKFSEATSSMYSWWQYQLCDVFIEAVKPYFNQSQELESERGACRDTLWICLDTGLRLLHPFMPYITEELWQRLPQPKEACRKDSIMISEYPSVVQEWTNDQVENEMETVLDSVNKLRSLRPHTDIHERRPAFMLCRGVDIAAIIQCYQAQISTLASVSSLKILTEDDPTPPNCATNIVNKDLSVYLQLRGALNTEAEREKLRKKRDEIQKQHDTLSQKMNASGYREKAPQSKQDEDMKKIAALLEELEIIREAESELESNN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.097555 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0506200 | RBH | 0.000000 | 0.117880 | 0.543799 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g36210 | RBH | 0.000000 | 0.079659 | 0.140647 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0506200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016560 | RBH | 0.138984 | 1.773054 | 0.514958 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016890 | RBH | 0.0 | 0.0 | 0.458393 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0016310 | RBH | 0.360275 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016780 | RBH | 0.000000 | 0.019391 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016550 | RBH | 3.577735 | 0.000000 | 1.207858 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0320700 | RBH | 0.4982725 | 0.00484 | 0.048332 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0016470 | RBH | 0.113668 | 0.000000 | 0.177525 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0343800 | RBH | 3.1111195 | 0.242132 | 0.1171035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0016110 | RBH | 0.059469 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016660 | RBH | 0.830068 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0016340 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016360 | RBH | 0.077993 | 0.0 | 0.124114 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016540 | RBH | 0.367220 | 0.0 | 0.386277 |
