Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0015650 | OGI:10058980 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:21142706-21145995 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACGCCTTGGTTTCCAACGAATTTTATCATCCGCTTAAATACATCCAAAGCTCTCCATCGCCATCGGCGGCCAACGGCGACCGCTCCGCTCTACCCAATCCACCCATCCACTCGCCGCCGCCCCCTGATCCAAAGCCTCCGCCGCGCCGCCGTCGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGTGAGCCCCTATGGGGACCCTCCTCCGGCCGCGTCCGCTCGCCCACGCCGCCGGCGCCGGCGACGCCACGCCGTCGACCGCGCACGGTAGCCACGCGCCTCTCGAGAGGCCCCCCCCCCCCCCGCCGCTCGCTGATCTCTCTTCTCATCCTGTTTGGGTTTGGGTTTGTGATTTGGGTGTTTTTTTTTTTTCCGCAGCGGTGGTGGTGAGCGGTGGCCGCGGCCGTGGCGTGGAGTGCCAGCCGCATCGGGTGCGCCGCCGCCCGGGTCCGCAGGTTGCGGTGGCGACGGCGAGCTGGAGGAGGCGGAGGGAGACCGTGGTGAGATCGGATTTCGCCGCTGGTGGTGCCGCTACCATGGGGGATTCGCCGCAGGCGCTCTCAGGTTTGCAGCCTCCTCCACTCTCTTCTCGCAAAATGTGTTGCTATGTTCCTCTCGCTGGGCTGGCCTCATAGCCATTAATGTAGTTTGCTGGAACATTACATTCGGAACGTTGTTGGCAATTGCTTGACAAAATGTGGAATTGTGGAGGGGAGAAAAATCGTTTGAACCTGCAGTGACAAAATTGCCATCTATAATTTTAAAACTGAAGGTGTGGAAATCAAACATAATCATTGCCAGCACATCATTCTTGTTAACCACCTTGACATATTGTTGGCTTATAACAGTTAGCTCCACACCAACTTGGAAGGTGTCAATGGAATGTAAGTATAAATTGAGGATAACTGGCAGTTGTTAAGACTTTCTACAGAACTTGTAGCAGCTAAAACTAGCTATTGTGCATTTATGTTTCATGGAATTTGAGCGGCAATGGATATTTCTTACTAAGACGTATAATGCAAAACAAAAAAAAAAAACTATGTCTATGCAGTTTACATGTAATGTGCGGATGCAAATAAAATCATGTTCATGGACAAACTAATGGGATTCATACCAAATTCCAGAATTGCATTTCTTATGTGGTTACTTTTGTTTGTTGATTTGGTTACCAGACATCGATGTGGTTTCAAGGGTCAGAGGGGTTTGCTTCTACGCGGTGACTGCAGTTGCAGCAATCTTTTTGTTTGTCGCCATGGTTGTGGTTCATCCACTTGTGCTCCTATTTGACCGATACCGGAGGAGAGCTCAGCACTACATTGCAAAGATTTGGGCAACTCTGACAATTTCCATGTTCTACAAGCTTGACGTCGAGGGAATGGAGAACCTGCCACCGAATAGTAGCCCTGCTGTCTATGTTGCGAACCATCAGAGTTTCTTGGATATCTATACCCTTCTAACTCTAGGAAGGTGTTTCAAGTTTATAAGCAAGACAAGTATATTTATGTTCCCAATTATTGGATGGGCAATGTATCTCTTAGGAGTAATTCCTTTGCGGCGTATGGACAGCAGGAGCCAGCTGGTATGGCTGTAGTCTCATCCCTGCTTTCTTAAGTAGACATATATACATTTACAGTATTTGGTAAATAAACAAGATTTTATGAATCATATATGATTTTGGGGAAAACACAAAACTCTCTTTGTTGGCTGCCTTGAACATAGTTCTGTTCACACAGTTATAGCACCTTCTTTAAAATGAAGAACTTTGTTGCATACACATAAGGCCAAACCACATAATGAATTTTGTTTATTTCTATCTTTGAATGTTAGCATCGTTTTTGTTTAATGCATGATCGCCTTCCTATATATTTGTAGTATGTCAACATTGTATTCCATGCTGAGCATAACAAATGGTTTGTTAAAATTCAGGACTGTCTTAAACGGTGTGTGGATTTGGTGAAAAAAGGAGCATCTGTATTTTTCTTTCCAGAGGGGACTAGAAGCAAAGATGGAAAGCTAGGTGCATTTAAGGTTCAGTAACCAAACTTAGGTTACATTACATCTAATGAGATTTTTATATTCAGTATATAATGTTAACCTTCTCATGGTGTACTGACGTGGTTATAAATGTCCCCAGAGAGGTGCATTCAGTGTGGCTACAAAGACCGGTGCTCCTGTGATACCTATTACTCTTCTCGGGACAGGGAAACTGATGCCTTCTGGAATGGAAGGCATCCTTAATTCAGGTTCAGTAAAGCTCATTATTCACCATCCAATTGAAGGGAATGATGCTGAGAAATTATGTTCTGAAGCAAGGAAGGTGATAGCTGACACTCTTATTCTAAACGGTTATGGAGTGCACTAAAGAAAGATGGTGTTTTTTTTTATTATATGGAACCTATTCAAAGGCACAGACAGGCTTTCAAGGCTAAGCTTGTTACAGGTACTGATACTAGTTACTAATTACTTTCGTAATCAGTATAAATAAGCTTGTGTAGTGTAATGGCATTGTACATTTCTGCACTTGGTAAATTTACAGAAGAGGCAAGTAATATTTTAGAGGATTGAGTTTATTCACCCAGTCATATAGTTGAAGAGGCAAGTAACCTGTAAGAGAGGACTGAACATTAACACCTCTTGTTCGATTAAAAATGACCAAAGAGCATCAAACATGTATTCGAGGCTGTTACTTTAGATATGGCCCATTAATTTGTTTAGTTGTCTATGTACATCCTAGTTGGTGTAAATGCCAGTTACCATTTCTATGATCTAAAACAATCAACTCTTTTAGTATATTTTCAAAAACGAAAATTCAGTACACATGTATGAATCTTAATATTCTTCTCTAGCTCGTTACAAAAGCAACAAAGGCACCGTGTCAGCTGGTTCACATTAGCTAGTTTGTACTTAGCATTATCCACTAGCACCTTATTTTCATGCATATCATGCTAATTTGCTTGCCCACGTTGAGTGGGAATTTTTTTCATGTTTTATAATTTATATATGTTTTAGACTTCTAGTCCACAATTTATGTACTTCAAGTTCCTGAGCCTCTAGTATGGCTGATAGCAGACTAGGTGCTGAGTGCTGTCCTTTTTTGCAGACTGAAGAGAGAAGAAATACAAGACTGTCCATTGTTAGTCAGATTTGTAAAAATAGACTCTGATGTAGTTTACTTTTGCCCCTATTTTATTTTTAACAATACAAATATATAACAGATCCTAAGAACTTATCTTAATTTAGGAGAAGTTGCTCGTTTCATTAAATTAAATTGTGAAGT
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| CDS seq | ATGGGGACCCTCCTCCGGCCGCGTCCGCTCGCCCACGCCGCCGGCGCCGGCGACGCCACGCCGTCGACCGCGCACGCGGTGGTGGTGAGCGGTGGCCGCGGCCGTGGCGTGGAGTGCCAGCCGCATCGGGTGCGCCGCCGCCCGGGTCCGCAGGTTGCGGTGGCGACGGCGAGCTGGAGGAGGCGGAGGGAGACCGTGGTGAGATCGGATTTCGCCGCTGGTGGTGCCGCTACCATGGGGGATTCGCCGCAGGCGCTCTCAGTTAGCTCCACACCAACTTGGAAGGTGTCAATGGAATACATCGATGTGGTTTCAAGGGTCAGAGGGGTTTGCTTCTACGCGGTGACTGCAGTTGCAGCAATCTTTTTGTTTGTCGCCATGGTTGTGGTTCATCCACTTGTGCTCCTATTTGACCGATACCGGAGGAGAGCTCAGCACTACATTGCAAAGATTTGGGCAACTCTGACAATTTCCATGTTCTACAAGCTTGACGTCGAGGGAATGGAGAACCTGCCACCGAATAGTAGCCCTGCTGTCTATGTTGCGAACCATCAGAGTTTCTTGGATATCTATACCCTTCTAACTCTAGGAAGGTGTTTCAAGTTTATAAGCAAGACAAGTATATTTATGTTCCCAATTATTGGATGGGCAATGTATCTCTTAGGAGTAATTCCTTTGCGGCGTATGGACAGCAGGAGCCAGCTGGACTGTCTTAAACGGTGTGTGGATTTGGTGAAAAAAGGAGCATCTGTATTTTTCTTTCCAGAGGGGACTAGAAGCAAAGATGGAAAGCTAGGTGCATTTAAGAGAGGTGCATTCAGTGTGGCTACAAAGACCGGTGCTCCTGTGATACCTATTACTCTTCTCGGGACAGGGAAACTGATGCCTTCTGGAATGGAAGGCATCCTTAATTCAGGTTCAGTAAAGCTCATTATTCACCATCCAATTGAAGGGAATGATGCTGAGAAATTATGTTCTGAAGCAAGGAAGGTGATAGCTGACACTCTTATTCTAAACGGTTATGGAGTGCACTAA
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| Protein seq | MGTLLRPRPLAHAAGAGDATPSTAHAVVVSGGRGRGVECQPHRVRRRPGPQVAVATASWRRRRETVVRSDFAAGGAATMGDSPQALSVSSTPTWKVSMEYIDVVSRVRGVCFYAVTAVAAIFLFVAMVVVHPLVLLFDRYRRRAQHYIAKIWATLTISMFYKLDVEGMENLPPNSSPAVYVANHQSFLDIYTLLTLGRCFKFISKTSIFMFPIIGWAMYLLGVIPLRRMDSRSQLDCLKRCVDLVKKGASVFFFPEGTRSKDGKLGAFKRGAFSVATKTGAPVIPITLLGTGKLMPSGMEGILNSGSVKLIIHHPIEGNDAEKLCSEARKVIADTLILNGYGVH |
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| Function | 1-acyl-sn-glycerol-3-phosphate acyltransferase BAT2, chloroplastic [UniProtKB/Swiss-Prot:Q9LLY4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0015650 | OsLima_10g0015650.01 | Chr10 | 21142706 | 21145995 | + | NAM | ||
| CDS seq | ATGGGGACCCTCCTCCGGCCGCGTCCGCTCGCCCACGCCGCCGGCGCCGGCGACGCCACGCCGTCGACCGCGCACGCGGTGGTGGTGAGCGGTGGCCGCGGCCGTGGCGTGGAGTGCCAGCCGCATCGGGTGCGCCGCCGCCCGGGTCCGCAGGTTGCGGTGGCGACGGCGAGCTGGAGGAGGCGGAGGGAGACCGTGGTGAGATCGGATTTCGCCGCTGGTGGTGCCGCTACCATGGGGGATTCGCCGCAGGCGCTCTCAGTTAGCTCCACACCAACTTGGAAGGTGTCAATGGAATACATCGATGTGGTTTCAAGGGTCAGAGGGGTTTGCTTCTACGCGGTGACTGCAGTTGCAGCAATCTTTTTGTTTGTCGCCATGGTTGTGGTTCATCCACTTGTGCTCCTATTTGACCGATACCGGAGGAGAGCTCAGCACTACATTGCAAAGATTTGGGCAACTCTGACAATTTCCATGTTCTACAAGCTTGACGTCGAGGGAATGGAGAACCTGCCACCGAATAGTAGCCCTGCTGTCTATGTTGCGAACCATCAGAGTTTCTTGGATATCTATACCCTTCTAACTCTAGGAAGGTGTTTCAAGTTTATAAGCAAGACAAGTATATTTATGTTCCCAATTATTGGATGGGCAATGTATCTCTTAGGAGTAATTCCTTTGCGGCGTATGGACAGCAGGAGCCAGCTGGACTGTCTTAAACGGTGTGTGGATTTGGTGAAAAAAGGAGCATCTGTATTTTTCTTTCCAGAGGGGACTAGAAGCAAAGATGGAAAGCTAGGTGCATTTAAGAGAGGTGCATTCAGTGTGGCTACAAAGACCGGTGCTCCTGTGATACCTATTACTCTTCTCGGGACAGGGAAACTGATGCCTTCTGGAATGGAAGGCATCCTTAATTCAGGTTCAGTAAAGCTCATTATTCACCATCCAATTGAAGGGAATGATGCTGAGAAATTATGTTCTGAAGCAAGGAAGGTGATAGCTGACACTCTTATTCTAAACGGTTATGGAGTGCACTAA
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| Protein seq | MGTLLRPRPLAHAAGAGDATPSTAHAVVVSGGRGRGVECQPHRVRRRPGPQVAVATASWRRRRETVVRSDFAAGGAATMGDSPQALSVSSTPTWKVSMEYIDVVSRVRGVCFYAVTAVAAIFLFVAMVVVHPLVLLFDRYRRRAQHYIAKIWATLTISMFYKLDVEGMENLPPNSSPAVYVANHQSFLDIYTLLTLGRCFKFISKTSIFMFPIIGWAMYLLGVIPLRRMDSRSQLDCLKRCVDLVKKGASVFFFPEGTRSKDGKLGAFKRGAFSVATKTGAPVIPITLLGTGKLMPSGMEGILNSGSVKLIIHHPIEGNDAEKLCSEARKVIADTLILNGYGVH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.164518 | 0.073521 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497100 | RBH | 2.108011 | 1.029934 | 4.371387 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35390 | RBH | 1.401467 | 0.706832 | 1.106272 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016040 | RBH | 1.338248 | 10.488576 | 2.805278 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016270 | RBH | 0.330092 | 4.786231 | 2.454098 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015660 | RBH | 2.388816 | 3.992316 | 9.618697 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016160 | RBH | 0.181166 | 0.168111 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016000 | RBH | 3.892558 | 11.341763 | 7.060114 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0314000 | RBH | 12.964486 | 14.521441 | 14.340326 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015890 | RBH | 0.263795 | 0.788581 | 1.138831 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336900 | SBH | 0.168846 | 0.2688145 | 0.650718 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015530 | RBH | 0.366267 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016050 | RBH | 3.153590 | 7.851034 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015790 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016190 | RBH | 0.118540 | 5.090432 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015820 | RBH | 0.242461 | 1.815487 | 2.073111 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015960 | RBH | 0.870677 | 15.914918 | 8.199900 |
