Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0012930 | OGI:10053180 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:18581833-18589555 | ||||||||
| Gene Symbol | OsIRL8 | ||||||||||
| DNA seq | aatccagtaagtttccgttcatcataattcaaaccattcaaaatttattagtggtcaaagttacaacaggattggtcaacagtcacgagtaaatagaaatggacggagtaatgtttttccactcttgatgccctaaacagtttaaagaatcccgaaaaagaagggattttgaaaagggatgaagtacaagtacatatctaggattgatgtgagtagcaacatcagctcctaatttgttcttaagtatacaagttattcttgcgacaacggattaagctggagacataaaatacacaatcttatccaaagagagattttatttataaacgcctgtaatcgtcatccgcaccttcatcgaacacaactgatgatcccacccggaaatcgagctgcttttgatgcttcttccttcgacgttcgtcaaactcctcccaaccgtccacctgttttccacaagtaaaaactggcattagcagtggcaaggttgaaatgtctccatcagagccaggaccaatgaaagcaaccgctagcaaataaacgacttatccgcctttttcgcaacggaaaggtaaatatatggtggaaatcccaacttaggtgaaaacttgtgtaaacccaagccaaaaaagtcgtctaaattcatcaaaataaatcacacatgtagatggacacgagttgtcacctaagttggggttttcaccacatgtttacccggaactatataacttgatcaacgttgtgggtattatgtattatgtatttaacgtggtgggtatcaactttggcgtcccaaaaagtgaaaccaataggctatttaagagagtgattactgaactgtccaggtcttaagcatatgctggtagctatcttaattcagtagagtactgaccataacaaagtaacaaacactaaataactgtgaagccttgggtcacttaggtcacttatacctgccgaagaacgtcgtttgtgaTttcagtgccatggagatcaagtgtaatgagctgcgagcattttatgaagaaagctgaaggtagggatgtaagaccattgttccgtacactcaaagcctgatggaataaagttattttgaaaaaaggaacattagaaactgatgacagtacaatgtaactgattattacacccatgctagacaaaagaaaaaatattgaATGGaaaaaaaatatcaccataaaggaaagcacaaataaccatctgctctgacataaataatatacagtgaacaactagaagcagcaggatagtaaatcttttgaccaagtttagctagtaatgctatagtttaataacgatctggtgcaataatcatatactccctccagtcaaaaatatctgttgtttaggacaaggtttggtcaaacaattaaaattccgacaaaaatatttttgaCcggagggagtataacaaatgaacgataaatactcatgactctctcaactgtcaagtcataagccaaaactttgtccaccgtatgctgataataaataaaaaattaagttcaaactgaacctgcaggctacatgataccacaaaattgcatggaatgtttcacgctgactactcacatatcaggtttgttgtggcattactgttgtgcgaaataatatttttatatgttcattggttatgaacatgcaacttaaacttccttaaaatgggggagtaagcatgtagttgtaccatcttgaaccaagggcactagtaatatcttgtttcaatgctaggaacaagatagcttagaagtatgcatgcagatttagtcttttattaaggaatatatttctccatgtgtggcccataggcacataccttgagatgttgaaggtttccAaaagcctctggcagttcagccAaaagatttgatgacaaatcaacctaatgaaattaaaaattttgatgaaccagaaattgccatatggaaactcagaagagctaagtgctcagtatggcctagaactagaaggaaaactgaaacagaaataaagcacacacctcattgagagattcacaaccacctatagatgaaggcaatgaagttatcctgccaacaagtgaaattgtagcagtgtggaagtcaggatacctttcaattctcAAaaaaaaagtaatcatgtaaattctcattagaagtataagaaaagacatattttctggcttgatagAaTacattttctttaaaagtttttctataatggaactgctcacaggctgaaagtctcacatgattgtgaaaaatctatcaacaactatattatatacagaaatcctctcttgaggtaactcttcacattagcacaaagtgtaaattatgctataagcatagcaaaaaaatgagacttcaatgagtcacttcagttaagcactagtagcacagtacctattattatttgctatcagaatctcaagatgcttcagtaaccctatttcaacaggtaagttctcaagcctgttatttgcaatacgaagttcacgtaaatgagttattgagcccaaacttgaaggtaaagtgaccagcctgcatgaaaaattataaatttagaacatatcatctcgtcatcttcaattctaaacaataatggcggacatgaaacttcctaatggataaagacctaaggtctactgtgccttgccagcaggcccataatctgctaccgtggacaggttgccctggcacctttgatattgctggcccagcatgacacgggtgctggcacaagacaggaaaattaagggatacaagaacaATTTGcaccacataaaccactgagataaactgagcacctcaaggcctttccagttattcaagaaaaaacaagggttaattagatacataccattaaaaatttatcagttttgaaatataccatcagtattcgcgtatttggaaccatgtcattacaattttacacatattcaagatatgccactacctaccatttacgaaaaaatttggaccaaattacccttctttgcttctttttctcccctctcctttcttccacagctcagagaacaggtggcggcggagcgagcggcagcagcggcagcgtcggagcgagcggcgagcggcagcggcggagcggcggcagcagcagcggcagcgtcggagcgagcggcgagcggcagcggcggagcggcggcggcagcaacggcagcggcggcggagcggcGgcagcagcaagcggtgagcaacagcggtggagcgagcggcagtggcggagcgagcggcagcggcggagcggcggcggcagcgtgcggagaggcggcgaccagcaacggcagcagcggtgcgagcggcggcggcagcgtgcggagaggcggcgaccagcaatggcagcaacggcgcgagcggcgagcggcggcggcagcgtgcggagcggcggcgagtaacaacggcagcagcggcgcgagcggcgagcggcagcggcggcggagcgacggcagcggtgagcggcagcggcggtgcggcggcagcagcatgcggagcggcggcgagcagcagcgcgagcggcgagcagcagtggcatcgagcagcaacggcgcggcagcggcagcagcagcggcggtgacgacgccggagttgaagcagcggggagagagagcttgaagatgagagaagagggagagaggtagaagatgagggcattttcgtccaatacatgcaaaatacgtgtcttagtggcaccactgaaattacaaacaaatatcaatggcatcgttccaaatacgcaaatagtaatggtatatttcaaaaccggtgaatttttaatggcatgtatctaattaacccaaaaaagaaccagcttaagatattatgcattgctacatttttcttttcaatgtatgagcctaactgtttaagtggagtttgaaatattaggtgggtgaatctaagaacatatataagagtctggagaaaaaaaaattatagcttagcggttttcattattgagagcacaaagagaagattatttaaggaaattacaaagggttgtttatatccactggcaacaaaacaaatattcatagcatgatgaaacaggatgttgaaaaatcagacctaccgattttggcttagagataaaactgttaatgtttgaacacatgttaggccttcccaggaaatgttcccatcagctatatcattagcagtcaggatcaatttctacaagatgaaaggatgatacattcaattatatttccttgtgaatgaagaagatgtctcaaccaacatattggggaagaacaattacctgtaaagatctcagagcagcaatttcttgtggaattgcttcaatacagttgttactgacatccagtactctaatagaagaaccacagccccatacttcttcaggcactgcctactcgaaaagacaaccacagtataagcccaaaaattcaaccaaaagtgaaattaagggtgtgtttggttgctcgaatgcactcagcctggctcgtatgcctcatccaggctgggtttagcctggttagaatgatgcaataggagttgtttggttgtatgtattagatgagcccggctcgtatgagatattgtttggttggttggatataaaaacttgtatgcaaaagattgtgtttggttggatgcatgtactttgaactcaattgtctcTttatttggatggtgatattagccaaccatacataaatattatctaatctataatctttcaaatttgaacaaaatgtagtatcaaatttaattaggtagaacAaatagaaactcaataaattgtaacatgacaagactgtattattaattttcacaaaataaaagatcgaaacggtaaattacgcagtagcagtacacgttccttaatcatgtgcttaatcggcaagaaaaagaaaacaagtaaacgttcctaatcacgggcttaatcggcgagaaaaagaagaaaagaaggAaaaaaaaagaaaagagaaagccctcgaagccttcgtccccatcgccggtcgacagagactgctgacgctgagagcccatgaccgccgctcgtcgctcctcccccttgcgccccgtccgtcgctgtcgtcggagtttgtggctctggatctgttgcttccgcctgcccactggatccggaacatcgcaggtcctgaaggagggagttgggagccaacaaagaagacagcgccggcgagaaCGaggggAaGaggaggaagatgatgccggcggtggcgacgttgccctccaagcgaccagatccgggtatcctcgttgagccctccttcctcttgccctcttcttcctcctggatctggccctcttcttccttggatatggccgagctcgagctcaccagacggctggataccctcgtcgagccttcttcctcctggatctgcccgggctcaagccgttgaagaggagggaaactgatggagacgacggcgaccgattgctgaggaaacaaatgaggggaGgggattgcgagatggctcgacccctgcccgttgcctgcaccccctcatcccgcggctgcacccgctcatccccgcgtgtgcatgagcctagcctggctgaggagctacggtcaattcctgcgtttcccctcagcctggcccaacggacctttttgcatcagctgagcctggctcccatgcccatgcaggcaaccaaacacagcgaattttgctgaggagatgcgagccacccttcatacaggcaaccaaACacaccctaagtgttgaacaaacaaaagtgtgagaaacagctaataagactcttaattcaaaagggtaaagataatggatagtaaggaatatcaatgaagttcttgaatgctgaacaactaaaaggcctgctttatcacgtggtgatgaataatagatgccttgtatgcactgaaaaccctgattcagttgatagcggcagtcaaatggctgtgcgcctgtgccatataaatcagtcttccaatcatgattcatgaatagcattttgcaaacagatgcattaaagaaagtatgttcaagactattatagtattttctacaggctgtggtgactacaaaagtatacaaataatactctagcgatgtgcatgtttttccttaccaacgattggcagttttgacacaggcacttcaatttgcttttgatagaaaggcagacatggaaagtttcatgaacttcaaagcataactatgctaagttgcttagtttaaaagtaatgtaagaaagttggaatcagttaccttcaagctggaatcagacaatgcaataataccagttgctttccaacgttcaggtcggattttactgacatttgtatccgacttttgtatttgagcttccttcacatttgaggctcttctcgtgcttggtgctggaacactactattcttagtgatgggaccgtcctgttggagagtggaacacatgtaagctcaatacaatgaattggacaagaaattgatttctcacgctgctttggcactgcaataaggttttttttttaagcaaaaaggtagagagactctaccttataaccattgtattaatggtaggtcaagagtacagagaaatagaggggagggtacaagaaaagagaaaaaaaaagaaaaagaagaaagaagaAaGAAGAGaaaaaaggaaaaaccaagtacaataaggagtagagaaagggagaaaggaaagagaagaaaatgcagaaagaaatataacaggaaaaagAaagataaaagcaaattttacagcataattcatcttgatgttgttgcagcaaactcccatttggggcagcaatgcagcatagatcagctgagctcgagtaaccagctggtgatatggctgcgatgtctgcatttgatgcgatgtttccacagactgagcttgtccttgatttcttgtagcaattgtgaaatggcaaatatttttgttgcgaaaagtggctgttgcagacgtcccacagtacattagcgcaagcggcaaatgggcaaagcatataggcaatcctgccttgaggtgcggttgggtcaaggatatgacagtactacaaactattcagccatttaccccaaacatcacagttcacgaatctcaatattaagaggaaatggtgtcgaatcggagtaaaaaatcaagctaattaacatatggaggcacctacaaaacgaattctgatcgtcattcaacttcggcaaccacaaaaggctccctcaaatcaaactgtacctcaccacattccaaaaggagctaattgctaaaaacactaaagatgaggcggttaatttaatttaccccctgatggagcccctgcgaggccatgagcatgaccttggatccgttcaccacctgcatcgagctcaggctggcggcatccgccagaactttccctgcaaccacatcaagagaacgataagtatccaaaacctataatcggaagcagattggcggtcaggaggaggtcaagggtttgggtgggggagggggaatcgggtgcctttgcagatgagcctctggccgcgggggaggacgttggtgagcggctggaggaggcgcttcaggtcggcggcggtggcggcggccgggacctccaccgggatcgtgcggccgccgaacttgacctggacggtgatggtcggcggcggcggcggcggcgagctctccatggtggcctccctCccgtctcccgtccactctgccaactgcctacttgtttggctgattgccccttc
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| CDS seq | atggagagctcgccgccgccgccgccgccgaccatcaccgtccaggtcaagttcggcggccgcacgatcccggtggaggtcccggccgccgccaccgccgccgacctgaagcgcctcctccagccgctcaccaacgtcctcccccgcggccagaggctcatctgcaaagggaaagttctggcggatgccgccagcctgagctcgatgcaggtggtgaacggatccaaggtcatgctcatggcctcgcaggggctccatcagggggacggtcccatcactaagaatagtagtgttccagcaccaagcacgagaagagcctcaaatgtgaaggaagctcaaatacaaaagtcggatacaaatgtcagtaaaatccgacctgaacgttggaaagcaactggtattattgcattgtctgattccagcttgaaggcagtgcctgaagaagtatggggctgtggttcttctattagagtactggatgtcagtaacaactgtattgaagcaattccacaagaaattgctgctctgagatctttacagaaattgatcctgactgctaatgatatagctgatgggaacatttcctgggaaggcctaacatgtgttcaaacattaacagttttatctctaagccaaaatcggctggtcactttaccttcaagtttgggctcaataactcatttacgtgaacttcgtattgcaaataacaggcttgagaacttacctgttgaaatagggttactgaagcatcttgagattctgatagcaaataataataggataacttcattgccttcatctataggtggttgtgaatctctcaatgaggttgatttgtcatcaaatctttTggctgaactgccagaggctttTggaaaccttcaacatctcaaggctttgagtgtacggaacaatggtcttacatccctaccttcagctttcttcataaaatgctcgcagctcattacacttgatctccatggcactgaaAtcacaaacgacgttcttcggcaggtggacggttgggaggagtttgacgaacgtcgaaggaagaagcatcaaaagcagctcgatttccgggtgggatcatcagttgtgttcgatgaaggtgcggatgacgattacaggcgtttataa
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| Protein seq | MESSPPPPPPTITVQVKFGGRTIPVEVPAAATAADLKRLLQPLTNVLPRGQRLICKGKVLADAASLSSMQVVNGSKVMLMASQGLHQGDGPITKNSSVPAPSTRRASNVKEAQIQKSDTNVSKIRPERWKATGIIALSDSSLKAVPEEVWGCGSSIRVLDVSNNCIEAIPQEIAALRSLQKLILTANDIADGNISWEGLTCVQTLTVLSLSQNRLVTLPSSLGSITHLRELRIANNRLENLPVEIGLLKHLEILIANNNRITSLPSSIGGCESLNEVDLSSNLLAELPEAFGNLQHLKALSVRNNGLTSLPSAFFIKCSQLITLDLHGTEITNDVLRQVDGWEEFDERRRKKHQKQLDFRVGSSVVFDEGADDDYRRL |
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| Function | Plant intracellular Ras-group-related LRR protein 8 [UniProtKB/Swiss-Prot:Q7XDQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0012930 | OsLima_10g0012930.02 | Chr10 | 18581833 | 18589254 | - | NAM | ||
| CDS seq | atgcaggtggtgaacggatccaaggtcatgctcatggcctcgcaggggctccatcagggggacggtcccatcactaagaatagtagtgttccagcaccaagcacgagaagagcctcaaatgtgaaggaagctcaaatacaaaagtcggatacaaatgtcagtaaaatccgacctgaacgttggaaagcaactggtattattgcattgtctgattccagcttgaaggcagtgcctgaagaagtatggggctgtggttcttctattagagtactggatgtcagtaacaactgtattgaagcaattccacaagaaattgctgctctgagatctttacagaaattgatcctgactgctaatgatatagctgatgggaacatttcctgggaaggcctaacatgtgttcaaacattaacagttttatctctaagccaaaatcggctggtcactttaccttcaagtttgggctcaataactcatttacgtgaacttcgtattgcaaataacaggcttgagaacttacctgttgaaatagggttactgaagcatcttgagattctgatagcaaataataataggataacttcattgccttcatctataggtggttgtgaatctctcaatgaggttgatttgtcatcaaatctttTggctgaactgccagaggctttTggaaaccttcaacatctcaaggctttgagtgtacggaacaatggtcttacatccctaccttcagctttcttcataaaatgctcgcagctcattacacttgatctccatggcactgaaAtcacaaacgacgttcttcggcaggtggacggttgggaggagtttgacgaacgtcgaaggaagaagcatcaaaagcagctcgatttccgggtgggatcatcagttgtgttcgatgaaggtgcggatgacgattacaggcgtttataa
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| Protein seq | MQVVNGSKVMLMASQGLHQGDGPITKNSSVPAPSTRRASNVKEAQIQKSDTNVSKIRPERWKATGIIALSDSSLKAVPEEVWGCGSSIRVLDVSNNCIEAIPQEIAALRSLQKLILTANDIADGNISWEGLTCVQTLTVLSLSQNRLVTLPSSLGSITHLRELRIANNRLENLPVEIGLLKHLEILIANNNRITSLPSSIGGCESLNEVDLSSNLLAELPEAFGNLQHLKALSVRNNGLTSLPSAFFIKCSQLITLDLHGTEITNDVLRQVDGWEEFDERRRKKHQKQLDFRVGSSVVFDEGADDDYRRL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0012930 | OsLima_10g0012930.01 | Chr10 | 18581833 | 18589555 | - | NAM | ||
| CDS seq | atggagagctcgccgccgccgccgccgccgaccatcaccgtccaggtcaagttcggcggccgcacgatcccggtggaggtcccggccgccgccaccgccgccgacctgaagcgcctcctccagccgctcaccaacgtcctcccccgcggccagaggctcatctgcaaagggaaagttctggcggatgccgccagcctgagctcgatgcaggtggtgaacggatccaaggtcatgctcatggcctcgcaggggctccatcagggggacggtcccatcactaagaatagtagtgttccagcaccaagcacgagaagagcctcaaatgtgaaggaagctcaaatacaaaagtcggatacaaatgtcagtaaaatccgacctgaacgttggaaagcaactggtattattgcattgtctgattccagcttgaaggcagtgcctgaagaagtatggggctgtggttcttctattagagtactggatgtcagtaacaactgtattgaagcaattccacaagaaattgctgctctgagatctttacagaaattgatcctgactgctaatgatatagctgatgggaacatttcctgggaaggcctaacatgtgttcaaacattaacagttttatctctaagccaaaatcggctggtcactttaccttcaagtttgggctcaataactcatttacgtgaacttcgtattgcaaataacaggcttgagaacttacctgttgaaatagggttactgaagcatcttgagattctgatagcaaataataataggataacttcattgccttcatctataggtggttgtgaatctctcaatgaggttgatttgtcatcaaatctttTggctgaactgccagaggctttTggaaaccttcaacatctcaaggctttgagtgtacggaacaatggtcttacatccctaccttcagctttcttcataaaatgctcgcagctcattacacttgatctccatggcactgaaAtcacaaacgacgttcttcggcaggtggacggttgggaggagtttgacgaacgtcgaaggaagaagcatcaaaagcagctcgatttccgggtgggatcatcagttgtgttcgatgaaggtgcggatgacgattacaggcgtttataa
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| Protein seq | MESSPPPPPPTITVQVKFGGRTIPVEVPAAATAADLKRLLQPLTNVLPRGQRLICKGKVLADAASLSSMQVVNGSKVMLMASQGLHQGDGPITKNSSVPAPSTRRASNVKEAQIQKSDTNVSKIRPERWKATGIIALSDSSLKAVPEEVWGCGSSIRVLDVSNNCIEAIPQEIAALRSLQKLILTANDIADGNISWEGLTCVQTLTVLSLSQNRLVTLPSSLGSITHLRELRIANNRLENLPVEIGLLKHLEILIANNNRITSLPSSIGGCESLNEVDLSSNLLAELPEAFGNLQHLKALSVRNNGLTSLPSAFFIKCSQLITLDLHGTEITNDVLRQVDGWEEFDERRRKKHQKQLDFRVGSSVVFDEGADDDYRRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.054396 | 0.398121 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0456200 | RBH | 1.208676 | 1.017065 | 3.087492 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g31790 | RBH | 1.312598 | 0.774812 | 1.310010 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0456200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0013210 | RBH | 0.214000 | 12.420712 | 5.692644 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0013430 | RBH | 0.052919 | 5.908869 | 5.191348 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0013000 | RBH | 2.345876 | 16.906546 | 18.438070 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0013280 | RBH | 0.156769 | 0.367963 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0013200 | RBH | 8.202055 | 41.541012 | 20.925682 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0277300 | RBH | 4.603219 | 32.1219575 | 15.2613995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0013220 | RBH | 0.153592 | 1.391870 | 2.303427 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0297800 | RBH | 7.8604495 | 22.835004 | 28.5222375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012830 | RBH | 1.077260 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0013210 | RBH | 5.495522 | 20.740274 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012920 | RBH | 0.124070 | 0.0 | 0.980507 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0013460 | RBH | 0.402390 | 6.457448 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G013150 | RBH | 0.788612 | 4.434790 | 2.249166 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0013090 | RBH | 0.501638 | 27.722837 | 10.001328 |
