Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0012520 | OGI:10052110 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:18263306-18266125 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatggacgagctgagctagtggacgcttctccttgctggacaacacctgaaactgttgctgcctctccagtagacagcgtctggtcagcggcagttgtagcagcggctgtctgctctgcttgtgcttggccttcatcttctcctgctccttctttcagctcccaaagatcgctcttgtcgacgccacagtggcaaagaatggcccagatgtgggttatgaactcgccaccggttgcaaggcatctcctgtgcgcttccgtgttccaggagggagccatgtgcaccagcagatcggcccatacccccgcaaggagctcccagcgagcaacgtcgtcgtgcttagtcgcatcgatcagcagcctgcccaggcgagctcccatcgtaattatcttctcgtgacgagctgcatcaaccgcgccttcaccgccgccgcttccaccactctcgtcgttgcgttcttcttgacccacgttaatcgccgtgtgagcattgccgctttctccattcctgctgccattatcaccgtcaccaatggcgctgggttgtcctccatctcctgtgcctttcttttcggggaagaagcatcgatatattcctttgatgcaagataggaagcaggagacacctggaagttcgctccacttgcagccatcgtcctctgtctgatcatcctcatcaccatcgttattgtcctgcggctccactgcttccctcattagcctccggtatatgctctgaagattgtcacagccatccaggatcttggaagcctcacgcacggtgctcttgagaataagctaggggacaaagttgctgtcaggtagcacgtccgggactgaggccagcaggtaggtgcagtaccttgagatgctgttggcgaccgtgtaattggcccgtagagcacactcaagcctctgcacctttatcatgtatggctgctgcgtggagaagcaactctttgcgagcttgagtgaatgcagcacctcggattctgttaatcttgtgttgtagtgctgtgcaagatcaatctcgcataagcttgtcgctatgtgccagaccagaattgtgtgggtacatgtgggctgcttcctgagtgtctcgttgatctcctcgagcagctgcagaccaatctgatcggtggctgattgattgatccgggatagaaatttagccacagaaggcaggacatgatcgttatttacctccaatgaatctttactgaaacgcagcgagtggagtgaattcagaatggcatgattcacctctactggcagatcgactgatttgcctagcctgacaccttttttacctctcggaaatatcccaaggctcatgtagaagaagatgtcccgtttccaagggttgtaaacataggcccgaaggaagtcatactggccgatcttgcggtgccagcgttggactatcttgaacctgggtgtgcacacaagcccaaccagcttatccctgatcaatttgggaacccacatcatgttctctgcgacgtactcgcacaggaccatgacttttgtccagtctgatagcaggtaggtaagcatcttccagagctctttcaccacaacgacacccatgaacacccatgtgatgataagatcaacattgacgccgtgtacaacgtgcgctatctcgccaacccgaggcctgtacaccttgtggatgtcccggccaagccagaaagtgaaagcaatggttagcacaggatgcaggctacccatgacagggaacccccggaagaagagcaccgggtatcttgtgtagaagtagtcgttcaggaacgctagctcggactcgataatccggaaggttcgcttcggatcatcgtcctcctccatgattttccaaagcaacctcttggtcttcttggcaatgttgctgtccacggataagtcatcaaatttgcaacgtagaagccgatacaaggagaaggacaggcacatgtctttgatcagattggcgtccttctcgcaggtcatgttcttgagatcttcattacgtttccagattctatccagtgtggtgggtgctctcttgtaccactgtttgccccggcaaaaataaccaaagaacaaccgttgtctcctactgtgtcgagtgggctccgttgtttcatcatcatcaatgatattcagatcgaaatcgtacctaggtgccttcaccttcaacttttgattttgatctccacacacaggatatctatatccttccattgtgttcaagttcacctccgaggactcgtcaggacgacgatgatgatcaacctgtgagctcatcactacgtacatagaactcttgccgtgcaatggtgatctgacggcaatgttgtatgcatatattaagtaaaagcttctgactagcatcgcacacagtgcccaaatcgggtgcctgaactggctgttgcgagtgctattcaggaaggccacgccaagcagtgccatgacattagacatctcgctgatgcgacggttttcttggtcgggaatgccatacgccgatatgaagcaaccgctgaaacgcaggttggacagtacgagagcccagacagggaacaggtctttcttgaatggagcgttctgcattagcccgatggtgtaaagaaaggttgaatcggctatcgcatccaatatgagaaagacatacttcatggtggagctacgtgaccgggggcgccactggtccaagaaggacatcagcaggtagaggacggcaatgacgacgacgaggaactcgattcgcatcagcattgcactctcagtttggagaaaaaggaagaaccattgcacgatttcactaggcttctccat
More
|
||||||||||
| CDS seq | atggagaagcctagtgaaatcgtgcaatggttcttcctttttctccaaactgagagtgcaatgctgatgcgaatcgagttcctcgtcgtcgtcattgccgtcctctacctgctgatgtccttcttggaccagtggcgcccccggtcacgtagctccaccatgaagtatgtctttctcatattggatgcgatagccgattcaacctttctttacaccatcgggctaatgcagaacgctccattcaagaaagacctgttccctgtctgggctctcgtactgtccaacctgcgtttcagcggttgcttcatatcggcgtatggcattcccgaccaagaaaaccgtcgcatcagcgagatgtctaatgtcatggcactgcttggcgtggccttcctgaatagcactcgcaacagccagttcaggcacccgatttgggcactgtgtgcgatgctagtcagaagcttttacttaatatatgcatacaacattgccgtcagatcaccattgcacggcaagagttctatgtacgtagtgatgagctcacaggttgatcatcatcgtcgtcctgacgagtcctcggaggtgaacttgaacacaatggaaggatatagatatcctgtgtgtggagatcaaaatcaaaagttgaaggtgaaggcacctaggtacgatttcgatctgaatatcattgatgatgatgaaacaacggagcccactcgacacagtaggagacaacggttgttctttggttatttttgccggggcaaacagtggtacaagagagcacccaccacactggatagaatctggaaacgtaatgaagatctcaagaacatgacctgcgagaaggacgccaatctgatcaaagacatgtgcctgtccttctccttgtatcggcttctacgttgcaaatttgatgacttatccgtggacagcaacattgccaagaagaccaagaggttgctttggaaaatcatggaggaggacgatgatccgaagcgaaccttccggattatcgagtccgagctagcgttcctgaacgactacttctacacaagatacccggtgctcttcttccgggggttccctgtcatgggtagcctgcatcctgtgctaaccattgctttcactttctggcttggccgggacatccacaaggtgtacaggcctcgggttggcgagatagcgcacgttgtacacggcgtcaatgttgatcttatcatcacatgggtgttcatgggtgtcgttgtggtgaaagagctctggaagatgcttacctacctgctatcagactggacaaaagtcatggtcctgtgcgagtacgtcgcagagaacatgatgtgggttcccaaattgatcagggataagctggttgggcttgtgtgcacacccaggttcaagatagtccaacgctggcaccgcaagatcggccagtatgacttccttcgggcctatgtttacaacccttggaaacgggacatcttcttctacatgagccttgggatatttccgagaggtaaaaaaggtgtcaggctaggcaaatcagtcgatctgccagtagaggtgaatcatgccattctgaattcactccactcgctgcgtttcagtaaagattcattggaggtaaataacgatcatgtcctgccttctgtggctaaatttctatcccggatcaatcaatcagccaccgatcagattggtctgcagctgctcgaggagatcaacgagacactcaggaagcagcccacatgtacccacacaattctggtctggcacatagcgacaagcttatgcgagattgatcttgcacagcactacaacacaagattaacagaatccgaggtgctgcattcactcaagctcgcaaagagttgcttctccacgcagcagccatacatgataaaggtgcagaggcttgagtgtgctctacgggccaattacacggtcgccaacagcatctcaaggtactgcacctacctgctggcctcagtcccggacagcatataccggaggctaatgagggaagcagtggagccgcaggacaataacgatggtgatgaggatgatcagacagaggacgatggctgcaagtggagcgaacttccaggtgtctcctgcttcctatcttgcatcaaaggaatatatcgatgcttcttccccgaaaagaaaggcacaggagatggaggacaacccagcgccattggtgacggtgataatggcagcaggaatggagaaagcggcaatgctcacacggcgattaacgtgggtcaagaagaacgcaacgacgagagtggtggaagcggcggcggtgaaggcgcggttgatgcagctcgtcacgagaagataattacgatgggagctcgcctgggcaggctgctgatcgatgcgactaagcacgacgacgttgctcgctgggagctccttgcgggggtatgggccgatctgctggtgcacatggctccctcctggaacacggaagcgcacaggagatgccttgcaaccggtggcgagttcataacccacatctgggccattctttgccactgtggcgtcgacaagagcgatctttgggagctgaaagaaggagcaggagaagatgaaggccaagcacaagcagagcagacagccgctgctacaactgccgctgaccagacgctgtctactggagaggcagcaacagtttcaggtgttgtccagcaaggagaagcgtccactagctcagctcgtccatga
More
|
||||||||||
| Protein seq | MEKPSEIVQWFFLFLQTESAMLMRIEFLVVVIAVLYLLMSFLDQWRPRSRSSTMKYVFLILDAIADSTFLYTIGLMQNAPFKKDLFPVWALVLSNLRFSGCFISAYGIPDQENRRISEMSNVMALLGVAFLNSTRNSQFRHPIWALCAMLVRSFYLIYAYNIAVRSPLHGKSSMYVVMSSQVDHHRRPDESSEVNLNTMEGYRYPVCGDQNQKLKVKAPRYDFDLNIIDDDETTEPTRHSRRQRLFFGYFCRGKQWYKRAPTTLDRIWKRNEDLKNMTCEKDANLIKDMCLSFSLYRLLRCKFDDLSVDSNIAKKTKRLLWKIMEEDDDPKRTFRIIESELAFLNDYFYTRYPVLFFRGFPVMGSLHPVLTIAFTFWLGRDIHKVYRPRVGEIAHVVHGVNVDLIITWVFMGVVVVKELWKMLTYLLSDWTKVMVLCEYVAENMMWVPKLIRDKLVGLVCTPRFKIVQRWHRKIGQYDFLRAYVYNPWKRDIFFYMSLGIFPRGKKGVRLGKSVDLPVEVNHAILNSLHSLRFSKDSLEVNNDHVLPSVAKFLSRINQSATDQIGLQLLEEINETLRKQPTCTHTILVWHIATSLCEIDLAQHYNTRLTESEVLHSLKLAKSCFSTQQPYMIKVQRLECALRANYTVANSISRYCTYLLASVPDSIYRRLMREAVEPQDNNDGDEDDQTEDDGCKWSELPGVSCFLSCIKGIYRCFFPEKKGTGDGGQPSAIGDGDNGSRNGESGNAHTAINVGQEERNDESGGSGGGEGAVDAARHEKIITMGARLGRLLIDATKHDDVARWELLAGVWADLLVHMAPSWNTEAHRRCLATGGEFITHIWAILCHCGVDKSDLWELKEGAGEDEGQAQAEQTAAATTAADQTLSTGEAATVSGVVQQGEASTSSARP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0012520 | OsLima_10g0012520.01 | Chr10 | 18263306 | 18266125 | - | NAM | ||
| CDS seq | atggagaagcctagtgaaatcgtgcaatggttcttcctttttctccaaactgagagtgcaatgctgatgcgaatcgagttcctcgtcgtcgtcattgccgtcctctacctgctgatgtccttcttggaccagtggcgcccccggtcacgtagctccaccatgaagtatgtctttctcatattggatgcgatagccgattcaacctttctttacaccatcgggctaatgcagaacgctccattcaagaaagacctgttccctgtctgggctctcgtactgtccaacctgcgtttcagcggttgcttcatatcggcgtatggcattcccgaccaagaaaaccgtcgcatcagcgagatgtctaatgtcatggcactgcttggcgtggccttcctgaatagcactcgcaacagccagttcaggcacccgatttgggcactgtgtgcgatgctagtcagaagcttttacttaatatatgcatacaacattgccgtcagatcaccattgcacggcaagagttctatgtacgtagtgatgagctcacaggttgatcatcatcgtcgtcctgacgagtcctcggaggtgaacttgaacacaatggaaggatatagatatcctgtgtgtggagatcaaaatcaaaagttgaaggtgaaggcacctaggtacgatttcgatctgaatatcattgatgatgatgaaacaacggagcccactcgacacagtaggagacaacggttgttctttggttatttttgccggggcaaacagtggtacaagagagcacccaccacactggatagaatctggaaacgtaatgaagatctcaagaacatgacctgcgagaaggacgccaatctgatcaaagacatgtgcctgtccttctccttgtatcggcttctacgttgcaaatttgatgacttatccgtggacagcaacattgccaagaagaccaagaggttgctttggaaaatcatggaggaggacgatgatccgaagcgaaccttccggattatcgagtccgagctagcgttcctgaacgactacttctacacaagatacccggtgctcttcttccgggggttccctgtcatgggtagcctgcatcctgtgctaaccattgctttcactttctggcttggccgggacatccacaaggtgtacaggcctcgggttggcgagatagcgcacgttgtacacggcgtcaatgttgatcttatcatcacatgggtgttcatgggtgtcgttgtggtgaaagagctctggaagatgcttacctacctgctatcagactggacaaaagtcatggtcctgtgcgagtacgtcgcagagaacatgatgtgggttcccaaattgatcagggataagctggttgggcttgtgtgcacacccaggttcaagatagtccaacgctggcaccgcaagatcggccagtatgacttccttcgggcctatgtttacaacccttggaaacgggacatcttcttctacatgagccttgggatatttccgagaggtaaaaaaggtgtcaggctaggcaaatcagtcgatctgccagtagaggtgaatcatgccattctgaattcactccactcgctgcgtttcagtaaagattcattggaggtaaataacgatcatgtcctgccttctgtggctaaatttctatcccggatcaatcaatcagccaccgatcagattggtctgcagctgctcgaggagatcaacgagacactcaggaagcagcccacatgtacccacacaattctggtctggcacatagcgacaagcttatgcgagattgatcttgcacagcactacaacacaagattaacagaatccgaggtgctgcattcactcaagctcgcaaagagttgcttctccacgcagcagccatacatgataaaggtgcagaggcttgagtgtgctctacgggccaattacacggtcgccaacagcatctcaaggtactgcacctacctgctggcctcagtcccggacagcatataccggaggctaatgagggaagcagtggagccgcaggacaataacgatggtgatgaggatgatcagacagaggacgatggctgcaagtggagcgaacttccaggtgtctcctgcttcctatcttgcatcaaaggaatatatcgatgcttcttccccgaaaagaaaggcacaggagatggaggacaacccagcgccattggtgacggtgataatggcagcaggaatggagaaagcggcaatgctcacacggcgattaacgtgggtcaagaagaacgcaacgacgagagtggtggaagcggcggcggtgaaggcgcggttgatgcagctcgtcacgagaagataattacgatgggagctcgcctgggcaggctgctgatcgatgcgactaagcacgacgacgttgctcgctgggagctccttgcgggggtatgggccgatctgctggtgcacatggctccctcctggaacacggaagcgcacaggagatgccttgcaaccggtggcgagttcataacccacatctgggccattctttgccactgtggcgtcgacaagagcgatctttgggagctgaaagaaggagcaggagaagatgaaggccaagcacaagcagagcagacagccgctgctacaactgccgctgaccagacgctgtctactggagaggcagcaacagtttcaggtgttgtccagcaaggagaagcgtccactagctcagctcgtccatga
More
|
|||||||
| Protein seq | MEKPSEIVQWFFLFLQTESAMLMRIEFLVVVIAVLYLLMSFLDQWRPRSRSSTMKYVFLILDAIADSTFLYTIGLMQNAPFKKDLFPVWALVLSNLRFSGCFISAYGIPDQENRRISEMSNVMALLGVAFLNSTRNSQFRHPIWALCAMLVRSFYLIYAYNIAVRSPLHGKSSMYVVMSSQVDHHRRPDESSEVNLNTMEGYRYPVCGDQNQKLKVKAPRYDFDLNIIDDDETTEPTRHSRRQRLFFGYFCRGKQWYKRAPTTLDRIWKRNEDLKNMTCEKDANLIKDMCLSFSLYRLLRCKFDDLSVDSNIAKKTKRLLWKIMEEDDDPKRTFRIIESELAFLNDYFYTRYPVLFFRGFPVMGSLHPVLTIAFTFWLGRDIHKVYRPRVGEIAHVVHGVNVDLIITWVFMGVVVVKELWKMLTYLLSDWTKVMVLCEYVAENMMWVPKLIRDKLVGLVCTPRFKIVQRWHRKIGQYDFLRAYVYNPWKRDIFFYMSLGIFPRGKKGVRLGKSVDLPVEVNHAILNSLHSLRFSKDSLEVNNDHVLPSVAKFLSRINQSATDQIGLQLLEEINETLRKQPTCTHTILVWHIATSLCEIDLAQHYNTRLTESEVLHSLKLAKSCFSTQQPYMIKVQRLECALRANYTVANSISRYCTYLLASVPDSIYRRLMREAVEPQDNNDGDEDDQTEDDGCKWSELPGVSCFLSCIKGIYRCFFPEKKGTGDGGQPSAIGDGDNGSRNGESGNAHTAINVGQEERNDESGGSGGGEGAVDAARHEKIITMGARLGRLLIDATKHDDVARWELLAGVWADLLVHMAPSWNTEAHRRCLATGGEFITHIWAILCHCGVDKSDLWELKEGAGEDEGQAQAEQTAAATTAADQTLSTGEAATVSGVVQQGEASTSSARP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.155952 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0450400 | SBH | 0.0 | 0.000000 | 0.196223 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g31290 | SBH | 0.0 | 0.000000 | 0.050495 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0450400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012780 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012990 | SBH | 0.0 | 0.0 | 0.257187 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012700 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012930 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012770 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0273100 | SBH | 0.004278 | 0.015438 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012790 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0292000 | RBH | 0.0807005 | 0.188521 | 0.2243595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012430 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012490 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012840 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012440 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0013030 | RBH | 0.0 | 0.508494 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012800 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012750 | SBH | 0.0 | 1.823364 | 0.466008 |
