Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0012050 | OGI:10050850 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:17645571-17649852 | ||||||||
| Gene Symbol | OsRab5A2, Rab5A2 | ||||||||||
| DNA seq | tctcttgccattgcaagccttacacgtgaccctgcgcatgctgcgtgtccccgagcagctgtcgcacagaagcagttgcaacctgcgagcggaaacccacctccaccccgtcgccggcctgccgacgccgccgccgcttgccctcctccgccttactcggcctccggcgcctcctgaCcccccggccatgggttgctcttcgtctctgccaggtcgtcgctcctCccccaccaacggatgaaaatagtttttttttctttcactttcttgttttgcttgcctacttggaccttggatctttccttctgcttccggcgatgctgctgcttgtgggtactactgtcagctctgaaagctctgaagaggcagtaggattgactgtgttgactgttagaattagtggatggagaggttgggtcaacgctggtttggttttgggtgtaaaatcttggccgtggcattgtccagcggtaaaatttcctgattgatggtgttttgatccgttttcagtacatgtggtcctgggtttcctttcttgatttgtgattttgttccgtagcaccagaggggctgtgaatttgtgatcatggaggttggtggagcttgtaatggggaaagtttggttttttaggttggtcacctactagtactcggcttgcatgcaatttttcacgataacattgtagggaggttctcgcgtgctagatgtgaatcttctgcAaaggtgcaggaaattagaatgcaagggatatggacagaatggttttcattcggctgtatttatttgttgagtactatcaatgtggaacttggtttcatccatcaaaatcggtgtgttgtttcttgcttttttgacagaccacattccacttactgcttttaagtaaaataagtaagaaaaaacatcttgatttcatgaagcggaactttctttgttgaaaactgtccaaaagagatcctaacttctgatgtgctgacaaaaaagcatttaatgattaacacagctacaagtaggatatgttgtttaactaagagtaaatttcataaaactacagatactttgcatgatctatcacaaaactacagattttagaactagtttcacaaaactacagatttaatgtcttcgtttatcacaaatctacaggtactttgaacactatatcacaaaactatagatttaagaacttgtttcacaaaactacaggtttaatatcttcatttttcacaaaactacaggtttaatattttcatttatcacaaaactacagatttagtgtctctattctcacaaaactacacgttttaacaatgctaaaacctgtagttttgtgagaatggagacactaaatctgtagttttgtgataaatgaagacactaaatgtgtagcactatgataaacgaatgcactaaatctatatttttgtgaaacaagttcttaaatctgtagttttgtgatagattgtataaagtacctgtagttttgtgataaacgaagacactaaatctgtagttttgtgaaacaagctcttaaatctgtagttttgtgatatattgtgcgaaatacctgtagttttgtgaaatttactctttaactaaatataggctataacaggattatggggaagaagaatagtgtgaacaaggatgctttgctatatttctttcacatgtcagccacatgtaagatgtaacataattctagtaagcttaagtgttatggagaagccttaaaaacatgtaacccctattttcatcgtgtggctctgctaaatcaaacctgatatggacatgctaaattactattccttgttgggtgtagtgttgtaatatttcacattaattcttccagctttCcagcttattttattctctgttcagttactctatgttccttcagaactcaaatcagtttggcactttctggggagcaaacacatttatgtatcacatattgatgcatccattgttttttttttctacagctaataatgctggaggggtaggtactatcagcaacgagaattctggtactgatccgaagaacttgcgagtgaaggtttggacttactcactagtgtcttcataattcTtttaatatttctcatctccattgttgacattaagttgaattggaatgaaaaggttcatgcccttcgtttttattttaccctattctgtagttggtattgcttggagattcaggtgttgggaaaagttgcattgttcttcgctttgtccgtGgtcagtttgaccccacttcaaaggtgaaacagacacttgattaTtttttacaggtttcctgtacAgaggacacatcatttgattctccctataatatggcttattctattctgtttgttttattaaatgaatttaggtgactgttggtgcatcatttttgtcacaaacattggcgttggaggattccacaacagtaaagtttgaaatatgggatactgctggtcaggagaggtgcataaatattagaagctttgattaactattttcccaagtgcatccttgcattaattctgtactatggaatttctgtaccatcttttgcttcacatatgtcttcttcacccttgatttacattgtttgcaagcatatgtgttgctattcgttaccaaagaagtcacgagaactggttaattttcaggtatgctgcattggcacctctttactaccggggagctggtgccgcaattgttgtgtatgacataacaagttcagaatcatttaacaaggcacaatactgggtgaaggtataacattttttataacatttttttcctatctgctctgttgtacttatcgattgtgtctgcgtgatctgttctaaatgcatgaatgaacaagttgaatgaatttgctcaaagcttttgtaatctacatttatacaatttgtggttcgatttgtatcgctgcttctaactctgtattttaccatgggaaaattGAgagtattttggaacactctattagattttaatcctggtataattggagaactcattttagtgtccattattatAtttgtgtgcccttctataacccttctctctagggttgtgtttagtatgtgtgcactttgtaaacaaatagatgtatgttgaccatggtctacatttgacttcgataaatcatgtaagttctgcaagcagcatcatggcaaatgcaaaggctaactgttgctacTttaatcatgcattcaagagcattttttatagataatggatatcaatccaacctctacatccctcatactacatagccaaagagcttttatctttttagataatggaaatggtttacattcccattctacagcttttattattcagtatcaactgtgggtttttttcctatgaacaaaagtctatgatgattcccaccccTtttttttgtatgtggaaaatgcaacttcttcacaatttgccttttacattttcaggaacttcagaaacacggtagtccagatatgatcatggctttggttggaaataaggctgatctacaTGacaatcgtagtgtatcctctcaggtgtgcatatatataTttctgaaagaatatgTtgcacttttaatggagatattagatgccgaagctactataaagaGATttttaactgtatcctttggttcttatctctgaaggatgcacaagagtatgcagagaggaacactatgtttttcatcgagacatcagcaaaaacggctgataacataaaccaactattcgaggtatgcatcaggagtatctccgagtcagttggcttgaacagaaactggagcatgacagtagaaaccatgattaacttttcttgcgttcaattcttgagctgttctctaaggtaaatttaggaatcatcttaacagattgtactatcatggcaggaaattgcgaagaggttgcccaggccaacaccatcctgaattcctgattggtaactgacccaggaaacaggctggcaactgtgtattgtacaacagcagtAAaagctctgtatgcacattgTttggaaatgcaacaactgtcatgtaaagcaactactttgctccttgCtgcttctgtttccaGcttggtcaagtgagctcagtgttttgctcagcacaagctgataggctatacgcatggccacatggtcattagcagttgcattatgctgcaggaatttaaccgtttcctgcgaaaatcttgtgaaattcctgcgttcaaaacagagcctttatttccagtgccaaattggttcttttacatctgaaaaattctgaaa
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| CDS seq | atgctgcgtgtccccgagcagctgtcgcacagaagcagttgcaacctgcgagcggaaacccacctccaccccgtcgccggcctgccgacgccgccgccgcttgccctcctccgccttactcggcctccggcgcctcctgaCcccccggccatgggttgctcttcgtctctgccagctaataatgctggaggggtaggtactatcagcaacgagaattctggtactgatccgaagaacttgcgagtgaagttggtattgcttggagattcaggtgttgggaaaagttgcattgttcttcgctttgtccgtGgtcagtttgaccccacttcaaaggtgactgttggtgcatcatttttgtcacaaacattggcgttggaggattccacaacagtaaagtttgaaatatgggatactgctggtcaggagaggtatgctgcattggcacctctttactaccggggagctggtgccgcaattgttgtgtatgacataacaagttcagaatcatttaacaaggcacaatactgggtgaaggaacttcagaaacacggtagtccagatatgatcatggctttggttggaaataaggctgatctacaTGacaatcgtagtgtatcctctcaggatgcacaagagtatgcagagaggaacactatgtttttcatcgagacatcagcaaaaacggctgataacataaaccaactattcgaggaaattgcgaagaggttgcccaggccaacaccatcctga
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| Protein seq | MLRVPEQLSHRSSCNLRAETHLHPVAGLPTPPPLALLRLTRPPAPPDPPAMGCSSSLPANNAGGVGTISNENSGTDPKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTTVKFEIWDTAGQERYAALAPLYYRGAGAAIVVYDITSSESFNKAQYWVKELQKHGSPDMIMALVGNKADLHDNRSVSSQDAQEYAERNTMFFIETSAKTADNINQLFEEIAKRLPRPTPS |
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| Function | Ras-related protein RABF1 [UniProtKB/Swiss-Prot:Q9CB01] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0012050 | OsLima_10g0012050.01 | Chr10 | 17645571 | 17649852 | + | NAM | ||
| CDS seq | atgctgcgtgtccccgagcagctgtcgcacagaagcagttgcaacctgcgagcggaaacccacctccaccccgtcgccggcctgccgacgccgccgccgcttgccctcctccgccttactcggcctccggcgcctcctgaCcccccggccatgggttgctcttcgtctctgccagctaataatgctggaggggtaggtactatcagcaacgagaattctggtactgatccgaagaacttgcgagtgaagttggtattgcttggagattcaggtgttgggaaaagttgcattgttcttcgctttgtccgtGgtcagtttgaccccacttcaaaggtgactgttggtgcatcatttttgtcacaaacattggcgttggaggattccacaacagtaaagtttgaaatatgggatactgctggtcaggagaggtatgctgcattggcacctctttactaccggggagctggtgccgcaattgttgtgtatgacataacaagttcagaatcatttaacaaggcacaatactgggtgaaggaacttcagaaacacggtagtccagatatgatcatggctttggttggaaataaggctgatctacaTGacaatcgtagtgtatcctctcaggatgcacaagagtatgcagagaggaacactatgtttttcatcgagacatcagcaaaaacggctgataacataaaccaactattcgaggaaattgcgaagaggttgcccaggccaacaccatcctga
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| Protein seq | MLRVPEQLSHRSSCNLRAETHLHPVAGLPTPPPLALLRLTRPPAPPDPPAMGCSSSLPANNAGGVGTISNENSGTDPKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTTVKFEIWDTAGQERYAALAPLYYRGAGAAIVVYDITSSESFNKAQYWVKELQKHGSPDMIMALVGNKADLHDNRSVSSQDAQEYAERNTMFFIETSAKTADNINQLFEEIAKRLPRPTPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.073444 | 0.313175 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0441800 | RBH | 1.450482 | 1.767700 | 1.087906 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g30520 | RBH | 0.958083 | 1.153184 | 0.271630 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0441800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012330 | SBH | 0.182759 | 2.307578 | 1.204879 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012530 | SBH | 0.083475 | 0.237608 | 0.404972 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012260 | RBH | 1.675647 | 22.760538 | 4.039711 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012520 | RBH | 0.252957 | 0.538255 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012270 | RBH | 5.645100 | 4.560957 | 2.846546 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0264800 | RBH | 6.7339715 | 23.30425 | 11.6969485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012300 | RBH | 0.214250 | 1.269696 | 0.810227 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0284500 | RBH | 7.846016 | 27.922781 | 20.353281 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004010 | RBH | 0.213885 | 0.320430 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012020 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012430 | RBH | 4.165751 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012020 | RBH | 0.000000 | 0.0 | 0.356204 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012530 | RBH | 0.538157 | 4.171576 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012380 | RBH | 0.940085 | 6.847980 | 1.291623 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012320 | RBH | 0.0 | 6.887472 | 3.076858 |
