Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0011280 | OGI:10048790 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:17002870-17003964 | ||||||||
| Gene Symbol | OsMB25, MB25, OsMB20, MB20, OsMB20a, OsMB20b, DLN234, OsDLN234, OsMB23, MB23 | ||||||||||
| DNA seq | atggcccccgccgcctgccgcgggagcccttcgcggttcggctccgcctccgccattgtcgccgatacggagaccgggtaccacctcctcaagatcggctgctactcgcgcaccaaggcgacgacccccaccggctccttcctacgttccagccagttcaccgtcggcagccaccgctggcgcatcaactactatcccaacggggagtcagccgactgcgccgactacatatcgctatacctctctctggacgagaaggcctccaagaatgtgaaggtgaaggcgcagttccaattccagattagtttcaccgacaaggtggagaagccacattcattggcatccgcggaagtaaatacttatggtggtgagagtttttggtcttggggttgtccgaagttcatcaaaagggatggttttgagaagtccaaagatctcagggacgactccttcaccatccggtgcgacgtagcggttatcggcgagatccgcactgaaatcaccaccacaaccttcgtcagcgtgccaccgtctgagctaaaccagcagttcggcaaccttctggagaccgagaagggcgccgacgtggtgtttgaggttggtgacgagacgttcgccgcgcaccggtgcgtgctcgcagcgcggtcgccagtcttcaacgcggagctctatggcttgatgaaggagggcaacgccgccggagtcgtgcgcatccaagacatggaggcgcaggtgttcaagctgttgctccgcttcgtgtacaccgacacgttgccagagatgaaggaggaagatgtcatgtgccagcatctacttgtcgcggcagatcggtacaatcggcagaggctcaagctgatgtgcgaggagaagttgtgcaagtacgttagcgtgggcacgttatcgaacatcctagcactggctgatcagcaccattgcgaagggctaaagaaagcgtgcttcaattttctcggctcgccggcgaacctgagtgttgtcatcgccaacaatggcttcaagcatctgagcaggagctgcccttctcttatggaagagctggttgccatgctggcacctccaccaccaagtcatgcctag
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| CDS seq | atggcccccgccgcctgccgcgggagcccttcgcggttcggctccgcctccgccattgtcgccgatacggagaccgggtaccacctcctcaagatcggctgctactcgcgcaccaaggcgacgacccccaccggctccttcctacgttccagccagttcaccgtcggcagccaccgctggcgcatcaactactatcccaacggggagtcagccgactgcgccgactacatatcgctatacctctctctggacgagaaggcctccaagaatgtgaaggtgaaggcgcagttccaattccagattagtttcaccgacaaggtggagaagccacattcattggcatccgcggaagtaaatacttatggtggtgagagtttttggtcttggggttgtccgaagttcatcaaaagggatggttttgagaagtccaaagatctcagggacgactccttcaccatccggtgcgacgtagcggttatcggcgagatccgcactgaaatcaccaccacaaccttcgtcagcgtgccaccgtctgagctaaaccagcagttcggcaaccttctggagaccgagaagggcgccgacgtggtgtttgaggttggtgacgagacgttcgccgcgcaccggtgcgtgctcgcagcgcggtcgccagtcttcaacgcggagctctatggcttgatgaaggagggcaacgccgccggagtcgtgcgcatccaagacatggaggcgcaggtgttcaagctgttgctccgcttcgtgtacaccgacacgttgccagagatgaaggaggaagatgtcatgtgccagcatctacttgtcgcggcagatcggtacaatcggcagaggctcaagctgatgtgcgaggagaagttgtgcaagtacgttagcgtgggcacgttatcgaacatcctagcactggctgatcagcaccattgcgaagggctaaagaaagcgtgcttcaattttctcggctcgccggcgaacctgagtgttgtcatcgccaacaatggcttcaagcatctgagcaggagctgcccttctcttatggaagagctggttgccatgctggcacctccaccaccaagtcatgcctag
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| Protein seq | MAPAACRGSPSRFGSASAIVADTETGYHLLKIGCYSRTKATTPTGSFLRSSQFTVGSHRWRINYYPNGESADCADYISLYLSLDEKASKNVKVKAQFQFQISFTDKVEKPHSLASAEVNTYGGESFWSWGCPKFIKRDGFEKSKDLRDDSFTIRCDVAVIGEIRTEITTTTFVSVPPSELNQQFGNLLETEKGADVVFEVGDETFAAHRCVLAARSPVFNAELYGLMKEGNAAGVVRIQDMEAQVFKLLLRFVYTDTLPEMKEEDVMCQHLLVAADRYNRQRLKLMCEEKLCKYVSVGTLSNILALADQHHCEGLKKACFNFLGSPANLSVVIANNGFKHLSRSCPSLMEELVAMLAPPPPSHA |
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| Function | BTB/POZ and MATH domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8L765] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0011280 | OsLima_10g0011280.01 | Chr10 | 17002870 | 17003964 | + | NAM | ||
| CDS seq | atggcccccgccgcctgccgcgggagcccttcgcggttcggctccgcctccgccattgtcgccgatacggagaccgggtaccacctcctcaagatcggctgctactcgcgcaccaaggcgacgacccccaccggctccttcctacgttccagccagttcaccgtcggcagccaccgctggcgcatcaactactatcccaacggggagtcagccgactgcgccgactacatatcgctatacctctctctggacgagaaggcctccaagaatgtgaaggtgaaggcgcagttccaattccagattagtttcaccgacaaggtggagaagccacattcattggcatccgcggaagtaaatacttatggtggtgagagtttttggtcttggggttgtccgaagttcatcaaaagggatggttttgagaagtccaaagatctcagggacgactccttcaccatccggtgcgacgtagcggttatcggcgagatccgcactgaaatcaccaccacaaccttcgtcagcgtgccaccgtctgagctaaaccagcagttcggcaaccttctggagaccgagaagggcgccgacgtggtgtttgaggttggtgacgagacgttcgccgcgcaccggtgcgtgctcgcagcgcggtcgccagtcttcaacgcggagctctatggcttgatgaaggagggcaacgccgccggagtcgtgcgcatccaagacatggaggcgcaggtgttcaagctgttgctccgcttcgtgtacaccgacacgttgccagagatgaaggaggaagatgtcatgtgccagcatctacttgtcgcggcagatcggtacaatcggcagaggctcaagctgatgtgcgaggagaagttgtgcaagtacgttagcgtgggcacgttatcgaacatcctagcactggctgatcagcaccattgcgaagggctaaagaaagcgtgcttcaattttctcggctcgccggcgaacctgagtgttgtcatcgccaacaatggcttcaagcatctgagcaggagctgcccttctcttatggaagagctggttgccatgctggcacctccaccaccaagtcatgcctag
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| Protein seq | MAPAACRGSPSRFGSASAIVADTETGYHLLKIGCYSRTKATTPTGSFLRSSQFTVGSHRWRINYYPNGESADCADYISLYLSLDEKASKNVKVKAQFQFQISFTDKVEKPHSLASAEVNTYGGESFWSWGCPKFIKRDGFEKSKDLRDDSFTIRCDVAVIGEIRTEITTTTFVSVPPSELNQQFGNLLETEKGADVVFEVGDETFAAHRCVLAARSPVFNAELYGLMKEGNAAGVVRIQDMEAQVFKLLLRFVYTDTLPEMKEEDVMCQHLLVAADRYNRQRLKLMCEEKLCKYVSVGTLSNILALADQHHCEGLKKACFNFLGSPANLSVVIANNGFKHLSRSCPSLMEELVAMLAPPPPSHA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0427300 | SBH | 0.402729 | 0.097866 | 0.437796 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g29180 | SBH | 0.262709 | 0.071890 | 0.108710 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0427300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011350 | SBH | 0.036137 | 0.000000 | 0.309649 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011640 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011340 | RBH | 0.000000 | 0.845379 | 0.432470 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011690 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011490 | SBH | 0.0 | 0.0 | 1.032655 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0253800 | SBH | 0.2806765 | 0.3109105 | 1.1770635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011560 | RBH | 0.000000 | 0.0 | 0.089256 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0273700 | SBH | 0 | 0 | 0.002284 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011320 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011280 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011670 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011230 | RBH | 0.0 | 0.0 | 0.209541 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011770 | SBH | 0.067045 | 0.393717 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011610 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011580 | SBH | 0.0 | 0.0 | 0.132882 |
