Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0011220 | OGI:10048790 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:16928800-16933991 | ||||||||
| Gene Symbol | OsMB28, MB28 | ||||||||||
| DNA seq | gacatgtctccgaccatgccgatgacgatgaccgccgacgaaccgaccaccgcctctgccatagttgccggcgtaaagacgggccaccatgtcctcaggatcgacggctactcccgcaccaagaacgtcgtccccaacggacagttcatcacctcccgctcgttccgcgccgccggccactcatggcacgtcttctactaccccaatggcttcgacgacgagtccatcgaatacatctccctctacctcctcctcgaggatgccgccaccgcgacgaccgcgacgacgacgacggtgcagttcaccgtcaccttgctcgacaaggacggccggcaagttccatcccagaaggccaattccggagtattcacctattccagcgagatccagaagtacgggttcacacagttcatcagtcgggatgagctggagcagtcggagcatctcgacggcgaccgcttcgccctccggttcgacatcaccgtcctgggcaagttccgcgccgaggagatcgccggccccgtcggcgcgccgtacgtggcggtgccgccgtccgacatgcgccgccacttcggggacctgctggcgagcggggacggcgccgacgtcgagttccgtgtccgcggcgccggcggcgaggaggagacggtcgccgcgcaccgtgtcgtgctcgcggcgcggtcgccggtcttcaaggctgagctcctcgccggcgtccccgcgaaggacggcggcggggccgtcatccagatcgacgacatggacgcggaggtgttcaggtccttgctccactacatgtacaccgactcgctgctgccggagaaggggacgacgcgggaggaggccgccatggcgcagaacatgatcgtcgcggcggacaggtacagcatggagacgctgaagctgatgtgcgaggacaggctgcgcaagcacatcggcgcgtcttcggtggcgaccatgctgacgttcgccgaccggcaccactgccatgggctcagggcggcgtgcacggagttcctcagctcgccgacgaatctgaaggccgccacggctaccgatgggtttgggcagctgagctgcccgaccgttctgaaggagctaatggcgaaggcactcttttaagtattgtgagttatagctgaattttatgcacagattgcagctactctctccgtttcatattgtaagactttctagtattgcctatatttataaagatgctaataaaaatgtctatttcattaacatctatatggatatgaacaatgctagaaaattttatattgtaaaacggacaaagtagataatttagcttaaaaaaatacaactttttccgtagatataaatatagctgtaTtttacaatgatcaagtctgcgatgttattatgtgtacttgggagaaactccaaatcgggcgcgatcatgttttagttgtcttgaaagttgaaactccaaatcactgcgatgttgcccctcgatctatcacgaagttgctgctagagctcgtcatggacggcgtggaaaggtggcgacacagccggatcaattgtagggacatggtagatcctaattttctaaagtagcttttccggcaatttgaagacggagaatacaggtggtcttcaaaaaggaaacaaaagAaaaaaagatggaggtcacgcactcacacaccaggaatcccttgagcactatagagttcgctgaagactttgatcgaagtcatcgatcagcgtcattgagtatatggcagctagaaaaaaagactttgatcgctgaagactttgtacgtacttacatcgaagtcattgatcagcgtcattgagcactagaaaaaaaaaagactttgatcgctgaagactttgtacttgtagttggcagcaatttcTtttttcgataagatattataatgtacactctaatgattaagagccgtcttgacgtttaagatcacgactacgatattcgcaaaatctaaattgagagcactatcgatttagtcataacgagcgacccatataagcattatccagatatgtgttaacttgaagaatattactttactatagtactaatccattaagcaagtagggaaaatattcttaccatctatgcttcaaataaaattttctcttaaactactcatccgattacaatacgattacaccgttgtgttcgtaacaattaaatctttacaacaagatctcacataattatattttgatgaaaaaaatcataaattacttttatgatatgtctaacttacttttagattttactaagttacttcttaaacatataaaagtaaattcaataattttaaaagtaatttacatatattatagaatgtcattcatgctgaaagtaagttaccttcgttttgttctaagtttctataatatgaaattaaattaatcagcacaaattatataattaactaaagacaataataaaagtaatcacctcagagcattatgaatgtataggaagtattttaatcaaatctaaaagtaacttatatatatgataatttgttcaatAaaaaaggcattaattaaagttactttcttttttttataagttatttctataatatatgtaaattacttttaggctttgttgaatttatttttatatgtctaagaagtaatttagtgaaattaaaagtaatttagatacataataaaaataatttattattttttatcaaaatataatcatgtGagatcttgttataaagatttaattgttacaaacataacggtgtaatcggatggtagatcgaatgagtagtttaagagaaaattgtatttgaagtaattcatgattggtgtcttttatttctataattctatttgaattacactcattcgtagtgttaggctgtaataattggatgtagctcgttgagaaaaaccgagatgctatattccattatctaaaaaaatatcatcgaacacctgttagacccaaagaaaacaagcccgttctgaccaaatgaataaatgagtaaaagtatttgcgagagatttttaatttaaacacacgtttgcctggccaaaatactaaaaattcaggttcggtccaatttgccaataaaatggttagatacttagatgagagatggaaagagcagtggcgttcggtgcatatgcagtgggcggtggcatatggccggtgactgccTtttttccttttttcgattctccgctggaatcctcggcattccgcagcccgtgggccatggcgccatgacaagtgaatgcagcgacctttttgcctttgctttgcttagcacttaagcagttaagccactactcatcactacttaagattcccatgcaggactactttaatctactacgttttcttagctcaaaaaacacacaacattatccctcttggccactgcccgtcgtcgtcccactagttcgatcgatcgccaccatgtcgtcgtcgtcatcaacatcttctaccggcaacaacaacggcggcatcccttcacgctcatcgtcatcttcgtcggcgatcgtggtgagcaaggtgagcgggtgccattttctcaatatcgacggctactcgcacaccaaggagatgctctcccatggccactgctccagatcgtacacctttcgcgtcggaacgcattcttggtacctcgagtactaccccaacggcaggtccttcttgcacaacgccagcgaccacatggccatctgcctcgtccgcgacgacgacggcgacgccggcgacggcggcgcgtacgagcagatgacggctcggttccacctgctcgaccaccacgccgggaagccggtgcccgggcacacccgcggcgtcacgtcgccgctgctgagcggcaagatatgggagtgctccagcttggtcacgaggaaggagctggaggagcacgtcctcgacggcgactgcctcgcggtcaggtgcgacatcaccatcgtcacggttccccgtcgtgctgcaccggcaccggcggtcgtcgtcgacgtgccggctgctgctccggatctgcaaagccagatgggcgccctcctcctgagcaaggagggcgcggacgtgacgctccaggtgggcgatggcgagacgacgacgttcgccgcccggttgtcggtgttcaggtcggagctcttcagcgccaccgccacctccaaagccggcagcggcgggcgggtgcacgtcgtcgacgacggcatcgacgcgcgggccttcgaggatctgctccggttcatatacacggacgcgccgccggagctcgacgaagaagacgacgacttctcctccatggcttggctcctcgtcgcggcggatcggtacaaggtagagcggctgaagatgatctgcgagaacgagctgtgcaagcggatcgacgggaacaacttcgaggccacgctggctttggctgagcagcatcactgctcttgcccatggttcaatctttcgttttcggcatttgtatcggagggtgccgacataccgaaaTttcggaaatttcgaaaatttcggttcgaattttccaaaattttgaacaaattttggtcaaatttaaacaaaatattgccaaatgcacaaaaaaatgaaaaaaattaaagattttggccgaaataatatcatatcggggggtgtccgatagaaccgaagaaagcgtgcatggatcttgtatcctcgtgagatgcacttaataatacagtggtaaaaagtgtattgtttctaccctgcgtttaattcccacacgctcataatattttcttgttataaaaggatattgcctagacatcactcgaaaagattttttaagagtaaaggacaccaccggtcattaaagttgaagcgtggtgtcacttaggtccatgatattgtaaaatcgatattaaggtccttgaacttgtttaagtgaatcattacaagccaaaacacgtttgactggtttgactgtcctatgtggctatccagtgtggccgcataTttttaattaggcccttccactttcgtaccactggtttggacgacagactagttggggtgcaacaaacatgatggcggtggtagggacaagggtcatgtggacagtggccatcctagatcagatgcggcgccgatgactagcgggaaggccggatccaatgccggtgctcggatggagctcggcatccattactccggcggcgaggtggcgtag
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| CDS seq | atgtctccgaccatgccgatgacgatgaccgccgacgaaccgaccaccgcctctgccatagttgccggcgtaaagacgggccaccatgtcctcaggatcgacggctactcccgcaccaagaacgtcgtccccaacggacagttcatcacctcccgctcgttccgcgccgccggccactcatggcacgtcttctactaccccaatggcttcgacgacgagtccatcgaatacatctccctctacctcctcctcgaggatgccgccaccgcgacgaccgcgacgacgacgacggtgcagttcaccgtcaccttgctcgacaaggacggccggcaagttccatcccagaaggccaattccggagtattcacctattccagcgagatccagaagtacgggttcacacagttcatcagtcgggatgagctggagcagtcggagcatctcgacggcgaccgcttcgccctccggttcgacatcaccgtcctgggcaagttccgcgccgaggagatcgccggccccgtcggcgcgccgtacgtggcggtgccgccgtccgacatgcgccgccacttcggggacctgctggcgagcggggacggcgccgacgtcgagttccgtgtccgcggcgccggcggcgaggaggagacggtcgccgcgcaccgtgtcgtgctcgcggcgcggtcgccggtcttcaaggctgagctcctcgccggcgtccccgcgaaggacggcggcggggccgtcatccagatcgacgacatggacgcggaggtgttcaggtccttgctccactacatgtacaccgactcgctgctgccggagaaggggacgacgcgggaggaggccgccatggcgcagaacatgatcgtcgcggcggacaggtacagcatggagacgctgaagctgatgtgcgaggacaggctgcgcaagcacatcggcgcgtcttcggtggcgaccatgctgacgttcgccgaccggcaccactgccatgggctcagggcggcgtgcacggagttcctcagctcgccgacgaatctgaaggccgccacggctaccgatggctcaaaaaacacacaacattatccctcttggccactgcccgtcgtcgtcccactagttcgatcgatcgccaccatgtcgtcgtcgtcatcaacatcttctaccggcaacaacaacggcggcatcccttcacgctcatcgtcatcttcgtcggcgatcgtggtgagcaaggtgagcgggtgccattttctcaatatcgacggctactcgcacaccaaggagatgctctcccatggccactgctccagatcgtacacctttcgcgtcggaacgcattcttggtacctcgagtactaccccaacggcaggtccttcttgcacaacgccagcgaccacatggccatctgcctcgtccgcgacgacgacggcgacgccggcgacggcggcgcgtacgagcagatgacggctcggttccacctgctcgaccaccacgccgggaagccggtgcccgggcacacccgcggcgtcacgtcgccgctgctgagcggcaagatatgggagtgctccagcttggtcacgaggaaggagctggaggagcacgtcctcgacggcgactgcctcgcggtcaggtgcgacatcaccatcgtcacggttccccgtcgtgctgcaccggcaccggcggtcgtcgtcgacgtgccggctgctgctccggatctgcaaagccagatgggcgccctcctcctgagcaaggagggcgcggacgtgacgctccaggtgggcgatggcgagacgacgacgttcgccgcccggttgtcggtgttcaggtcggagctcttcagcgccaccgccacctccaaagccggcagcggcgggcgggtgcacgtcgtcgacgacggcatcgacgcgcgggccttcgaggatctgctccggttcatatacacggacgcgccgccggagctcgacgaagaagacgacgacttctcctccatggcttggctcctcgtcgcggcggatcggtacaaggtagagcggctgaagatgatctgcgagaacgagctggacaagggtcatgtggacagtggccatcctagatcagatgcggcgccgatgactagcgggaaggccggatccaatgccggtgctcggatggagctcggcatccattactccggcggcgaggtggcgtag
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| Protein seq | MSPTMPMTMTADEPTTASAIVAGVKTGHHVLRIDGYSRTKNVVPNGQFITSRSFRAAGHSWHVFYYPNGFDDESIEYISLYLLLEDAATATTATTTTVQFTVTLLDKDGRQVPSQKANSGVFTYSSEIQKYGFTQFISRDELEQSEHLDGDRFALRFDITVLGKFRAEEIAGPVGAPYVAVPPSDMRRHFGDLLASGDGADVEFRVRGAGGEEETVAAHRVVLAARSPVFKAELLAGVPAKDGGGAVIQIDDMDAEVFRSLLHYMYTDSLLPEKGTTREEAAMAQNMIVAADRYSMETLKLMCEDRLRKHIGASSVATMLTFADRHHCHGLRAACTEFLSSPTNLKAATATDGSKNTQHYPSWPLPVVVPLVRSIATMSSSSSTSSTGNNNGGIPSRSSSSSSAIVVSKVSGCHFLNIDGYSHTKEMLSHGHCSRSYTFRVGTHSWYLEYYPNGRSFLHNASDHMAICLVRDDDGDAGDGGAYEQMTARFHLLDHHAGKPVPGHTRGVTSPLLSGKIWECSSLVTRKELEEHVLDGDCLAVRCDITIVTVPRRAAPAPAVVVDVPAAAPDLQSQMGALLLSKEGADVTLQVGDGETTTFAARLSVFRSELFSATATSKAGSGGRVHVVDDGIDARAFEDLLRFIYTDAPPELDEEDDDFSSMAWLLVAADRYKVERLKMICENELDKGHVDSGHPRSDAAPMTSGKAGSNAGARMELGIHYSGGEVA |
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| Function | BTB/POZ and MATH domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8L765] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0011220 | OsLima_10g0011220.01 | Chr10 | 16928800 | 16933991 | + | NAM | ||
| CDS seq | atgtctccgaccatgccgatgacgatgaccgccgacgaaccgaccaccgcctctgccatagttgccggcgtaaagacgggccaccatgtcctcaggatcgacggctactcccgcaccaagaacgtcgtccccaacggacagttcatcacctcccgctcgttccgcgccgccggccactcatggcacgtcttctactaccccaatggcttcgacgacgagtccatcgaatacatctccctctacctcctcctcgaggatgccgccaccgcgacgaccgcgacgacgacgacggtgcagttcaccgtcaccttgctcgacaaggacggccggcaagttccatcccagaaggccaattccggagtattcacctattccagcgagatccagaagtacgggttcacacagttcatcagtcgggatgagctggagcagtcggagcatctcgacggcgaccgcttcgccctccggttcgacatcaccgtcctgggcaagttccgcgccgaggagatcgccggccccgtcggcgcgccgtacgtggcggtgccgccgtccgacatgcgccgccacttcggggacctgctggcgagcggggacggcgccgacgtcgagttccgtgtccgcggcgccggcggcgaggaggagacggtcgccgcgcaccgtgtcgtgctcgcggcgcggtcgccggtcttcaaggctgagctcctcgccggcgtccccgcgaaggacggcggcggggccgtcatccagatcgacgacatggacgcggaggtgttcaggtccttgctccactacatgtacaccgactcgctgctgccggagaaggggacgacgcgggaggaggccgccatggcgcagaacatgatcgtcgcggcggacaggtacagcatggagacgctgaagctgatgtgcgaggacaggctgcgcaagcacatcggcgcgtcttcggtggcgaccatgctgacgttcgccgaccggcaccactgccatgggctcagggcggcgtgcacggagttcctcagctcgccgacgaatctgaaggccgccacggctaccgatggctcaaaaaacacacaacattatccctcttggccactgcccgtcgtcgtcccactagttcgatcgatcgccaccatgtcgtcgtcgtcatcaacatcttctaccggcaacaacaacggcggcatcccttcacgctcatcgtcatcttcgtcggcgatcgtggtgagcaaggtgagcgggtgccattttctcaatatcgacggctactcgcacaccaaggagatgctctcccatggccactgctccagatcgtacacctttcgcgtcggaacgcattcttggtacctcgagtactaccccaacggcaggtccttcttgcacaacgccagcgaccacatggccatctgcctcgtccgcgacgacgacggcgacgccggcgacggcggcgcgtacgagcagatgacggctcggttccacctgctcgaccaccacgccgggaagccggtgcccgggcacacccgcggcgtcacgtcgccgctgctgagcggcaagatatgggagtgctccagcttggtcacgaggaaggagctggaggagcacgtcctcgacggcgactgcctcgcggtcaggtgcgacatcaccatcgtcacggttccccgtcgtgctgcaccggcaccggcggtcgtcgtcgacgtgccggctgctgctccggatctgcaaagccagatgggcgccctcctcctgagcaaggagggcgcggacgtgacgctccaggtgggcgatggcgagacgacgacgttcgccgcccggttgtcggtgttcaggtcggagctcttcagcgccaccgccacctccaaagccggcagcggcgggcgggtgcacgtcgtcgacgacggcatcgacgcgcgggccttcgaggatctgctccggttcatatacacggacgcgccgccggagctcgacgaagaagacgacgacttctcctccatggcttggctcctcgtcgcggcggatcggtacaaggtagagcggctgaagatgatctgcgagaacgagctggacaagggtcatgtggacagtggccatcctagatcagatgcggcgccgatgactagcgggaaggccggatccaatgccggtgctcggatggagctcggcatccattactccggcggcgaggtggcgtag
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| Protein seq | MSPTMPMTMTADEPTTASAIVAGVKTGHHVLRIDGYSRTKNVVPNGQFITSRSFRAAGHSWHVFYYPNGFDDESIEYISLYLLLEDAATATTATTTTVQFTVTLLDKDGRQVPSQKANSGVFTYSSEIQKYGFTQFISRDELEQSEHLDGDRFALRFDITVLGKFRAEEIAGPVGAPYVAVPPSDMRRHFGDLLASGDGADVEFRVRGAGGEEETVAAHRVVLAARSPVFKAELLAGVPAKDGGGAVIQIDDMDAEVFRSLLHYMYTDSLLPEKGTTREEAAMAQNMIVAADRYSMETLKLMCEDRLRKHIGASSVATMLTFADRHHCHGLRAACTEFLSSPTNLKAATATDGSKNTQHYPSWPLPVVVPLVRSIATMSSSSSTSSTGNNNGGIPSRSSSSSSAIVVSKVSGCHFLNIDGYSHTKEMLSHGHCSRSYTFRVGTHSWYLEYYPNGRSFLHNASDHMAICLVRDDDGDAGDGGAYEQMTARFHLLDHHAGKPVPGHTRGVTSPLLSGKIWECSSLVTRKELEEHVLDGDCLAVRCDITIVTVPRRAAPAPAVVVDVPAAAPDLQSQMGALLLSKEGADVTLQVGDGETTTFAARLSVFRSELFSATATSKAGSGGRVHVVDDGIDARAFEDLLRFIYTDAPPELDEEDDDFSSMAWLLVAADRYKVERLKMICENELDKGHVDSGHPRSDAAPMTSGKAGSNAGARMELGIHYSGGEVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0425400 | SBH | 0.0 | 0.396449 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g28860 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0425400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011230 | SBH | 0.0 | 0.0 | 0.159188 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011520 | SBH | 0.0 | 0.258635 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011210 | SBH | 0.0 | 0.0 | 0.481876 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011600 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011430 | RBH | 0.0 | 0.0 | 0.493085 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0253400 | RBH | 0.1123455 | 0.0033085 | 0.0478285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011460 | RBH | 0.0 | 0.038734 | 0.111524 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0272300 | RBH | 0.0920935 | 0.046073 | 0.219411 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011230 | SBH | 0.0 | 0.016804 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011600 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011530 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011460 | RBH | 0.0 | 0.0 | 0.587865 |
