Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0009900 | OGI:10045440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:15721352-15724432 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggtttgtcaggatcccgggtgggccgcacatgggctggtcagcccatcgccatgaggcccaagcaaacggaagagagcagcatacaagcagcagcatcggcaacaccagggggcattgaaagatcatttggacttggcggagctgaagctcccggcggcggcggcgacttgggcggccggtgggcaccctcgtcgatctctctcccctacctctcctccgatctccagcctcccccccccccttgattctagaagtttccagcacttgtattccatagcttcttcttctctccccaaaacagttgttgcttctatggtggatgcttgttgttgagttggaagtagtgggttcctaacaatctggtatcagagctatcgattcatgggatttctagcatggagttgatgggagagtactgcagcaatgccccatgcaagtggttgttggatttgggcaagggtggtgctcatgacaccaacgcccacaacctgttcgatggaatgcctagccaatctgagatgcccaaggaagatcagaggacatctaagcctgtccccatcaattctaccatgaacaaagaggagaaatggctagagaaagctctagatcggatattggagaagtttgaacaaatggaggccaaacgcatgcaagaggagaagatcaatcaaatatttcaaaagttggaggagatagaggttcgtaggagcaaggcttccgaggaaataattgaagccatcagggcaaccaccgctgttctcaaggctaaatcacctacagcacccatcgcaccacctactccagcgcctaccaagtgtttgatagaatgccccaacaacaacttcactcgggcaacgacgagttcaagtcacattggtgcggatactgctccaacagctacctgggagctaggagacaacaaggacaagggccacgccccctgcatcgtcgccaaggactcacccgaggtcacgcccaccatgtgttcgaagaaatactccggtcctaccatcaagcccgatctcactatggctgtagtggttacgtccgccaccactgctgtggcctctatggagttggtagctgctgggaatgcaatcggtgccactgacatcaacaatcttgaccaccccaaggtgacgcatgctaagtgttcgatgtctagctccggcgtcaaacagggcactgaacaagttgtgcttgcgtttccgcttatggctagccctatggagttcatgacatcattggtagaaccatctccacccacagggctgaagcttggtgatgccatttgcgtgggagatcaggtgcctatgaagtgttcaatgaaatgtactgagagtgacaataagccacagatggaacaccccaagagaaacccattgccacctgcctggtcaggatggaagaagtggtatatgacctggactacaatcaatcatcataggatgagattatatttcgtcccaccctggcctccaccaagtctagtaagttctttggcatgggtgcatttttgtattggagctcttatatttcaaagggtggttttatcaaatgaaatggttgagttggagccctggcctccaccacatgaagcaagtttcagaattttgcctttccaaactagtagcaggaaatgttgcaattatatcactgctttgagtataattgcatgggatgagaagaggacaaggagtagtagaattattgacactagttttgaggaagggacacaggaatgttggaatccatatctagccttgccaatcctcagctattttaggaccagattgcaatggatgccaccttggctgccattagttggtttgctggaagctagagtagggaagggttgcactactgattttgctgcaagtataattccttggaatgagcaaaagaaaatgattactattgaaacttccacttgctttgagcagaaaatgcaccaaattcgggctttgattttccacgtcagtttgacatcacttactagcaaggaaagcaatctagttatttgtgatcctgaatcattatctatttggttatcatatgttgatctctgggggatgttgctcaactactacccaactatagtggagaaatggaatatgagaataatttgcatgttgatatcagaatctgaatcatgtttggaatcaaattacattggtttgaatgttgaaagagatttgctatatatgattgctgaagaaaaaggttgcaaaaggtgaaaggaatggaagcagacactaattcaattcatgatgagaagtatacttttgggttagttcctacagtggtgttgatcaagcgaggttgtcactgtttgcagcatatcaaattgttgggaatccatgttggcaagcaattcgtaacagtgccattgtcatgcatcacccaggagtactttacatggagtaagcagttattcaagctaaagctacttgctctattcttcttcaatgatggttcattgtctaacaccaaatatttggagcaaccatgggatccgagaggtgtattccatcggcttggggacaagccgaatttcaagaagaggggattgtcaggatcccgggtgggccgcacacgggctggtcatcccatcgccatgaggcccaagcaaacggaagggagcagcatacaagcagcagcatcggcaacaccagggggcatcgaaagatcatttggacttggcggagctgaagctcccggcggcggcggtgacttgggcggccggtgggcaccctcatcgatctctctcccctacctctcctccgatctctagcctccccccccccccccggttctagaagtttccagcacttgtattccatagcttcttcttctctccccaaaatagttgttgcttctttggtgaatgcttgttgttgagttggaagtagtgggttcctaacagggtttcacgtaaacagaagtataccactgcggcattggcattaGgggatgttaatcacgagattcggcggccattgatttcctacgttgcttgcatatggaaagcaaatacatgcttgcatggaaacctaggaaatcaaaaggcaaggtag
More
|
||||||||||
| CDS seq | atgggtttgtcaggatcccgggtgggccgcacatgggctggtcagcccatcgccatgaggcccaagcaaacggaagagagcagcatacaagcagcagcatcggcaacaccagggggcattgaaagatcatttggacttggcggagctgaagctcccggcggcggcggcgacttgggcggccgccaatctgagatgcccaaggaagatcagaggacatctaagcctgtccccatcaattctaccatgaacaaagaggagaaatggctagagaaagctctagatcggatattggagaagtttgaacaaatggaggccaaacgcatgcaagaggagaagatcaatcaaatatttcaaaagttggaggagatagaggttcgtaggagcaaggcttccgaggaaataattgaagccatcagggcaaccaccgctgttctcaaggctaaatcacctacagcacccatcgcaccacctactccagcgcctaccaagtgtttgatagaatgccccaacaacaacttcactcgggcaacgacgagttcaagtcacattggtgcggatactgctccaacagctacctgggagctaggagacaacaaggacaagggccacgccccctgcatcgtcgccaaggactcacccgaggtcacgcccaccatgtgttcgaagaaatactccggtcctaccatcaagcccgatctcactatggctgtagtggttacgtccgccaccactgctgtggcctctatggagttggtagctgctgggaatgcaatcggtgccactgacatcaacaatcttgaccaccccaaggtgacgcatgctaagtgttcgatgtctagctccggcgtcaaacagggcactgaacaagttgtgcttgcgtttccgcttatggctagccctatggagttcatgacatcattggtagaaccatctccacccacagggctgaagcttggtgatgccatttgcgtgggagatcaggtgcctatgaagtgttcaatgaaatgtactgagagtgacaataagccacagatggaacaccccaagagaaacccattgccacctgcctggtcaggatggaagaagtggtatatgacctggactacaatcaatcatcataggatgagattatatttcgtcccaccctggcctccaccaagtctagtaagttctttggcatgggtgcatttttgtattggagctcttatatttcaaagggtggttttatcaaatgaaatggttgagttggagccctggcctccaccacatgaagcaagtttcagaattttgcctttccaaactagtagcaggaaatgttgcaattatatcactgctttgagtataattgcatgggatgagaagaggacaaggagtagtagaattattgacactagttttgaggaagggacacaggaatgttggaatccatatctagccttgccaatcctcagctattttaggaccagattgcaatggatgccaccttggctgccattagttggtttgctggaagctagagtagggaagggttgcactactgattttgctgcaagtataattccttggaatgagcaaaagaaaatgattactattgaaacttccacttgctttgagcagaaaatgcaccaaattcgggctttgattttccacgtcagtttgacatcacttactagcaaggaaagcaatctagttatttgtgatcctgaatcattatctatttggttatcatatgttgatctctgggggatgttgctcaactactacccaactatagtggagaaatggaatatgagaataatttgcatgttgatatcagaatctgaatcatgtttggaatcaaattacattggtttgaatgttgaaagagatttgctatatatgattgctgaagaaaaaggttgcaaaaggtga
More
|
||||||||||
| Protein seq | MGLSGSRVGRTWAGQPIAMRPKQTEESSIQAAASATPGGIERSFGLGGAEAPGGGGDLGGRQSEMPKEDQRTSKPVPINSTMNKEEKWLEKALDRILEKFEQMEAKRMQEEKINQIFQKLEEIEVRRSKASEEIIEAIRATTAVLKAKSPTAPIAPPTPAPTKCLIECPNNNFTRATTSSSHIGADTAPTATWELGDNKDKGHAPCIVAKDSPEVTPTMCSKKYSGPTIKPDLTMAVVVTSATTAVASMELVAAGNAIGATDINNLDHPKVTHAKCSMSSSGVKQGTEQVVLAFPLMASPMEFMTSLVEPSPPTGLKLGDAICVGDQVPMKCSMKCTESDNKPQMEHPKRNPLPPAWSGWKKWYMTWTTINHHRMRLYFVPPWPPPSLVSSLAWVHFCIGALIFQRVVLSNEMVELEPWPPPHEASFRILPFQTSSRKCCNYITALSIIAWDEKRTRSSRIIDTSFEEGTQECWNPYLALPILSYFRTRLQWMPPWLPLVGLLEARVGKGCTTDFAASIIPWNEQKKMITIETSTCFEQKMHQIRALIFHVSLTSLTSKESNLVICDPESLSIWLSYVDLWGMLLNYYPTIVEKWNMRIICMLISESESCLESNYIGLNVERDLLYMIAEEKGCKR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0009900 | OsLima_10g0009900.01 | Chr10 | 15721352 | 15723592 | + | NAM | ||
| CDS seq | atgggtttgtcaggatcccgggtgggccgcacatgggctggtcagcccatcgccatgaggcccaagcaaacggaagagagcagcatacaagcagcagcatcggcaacaccagggggcattgaaagatcatttggacttggcggagctgaagctcccggcggcggcggcgacttgggcggccgccaatctgagatgcccaaggaagatcagaggacatctaagcctgtccccatcaattctaccatgaacaaagaggagaaatggctagagaaagctctagatcggatattggagaagtttgaacaaatggaggccaaacgcatgcaagaggagaagatcaatcaaatatttcaaaagttggaggagatagaggttcgtaggagcaaggcttccgaggaaataattgaagccatcagggcaaccaccgctgttctcaaggctaaatcacctacagcacccatcgcaccacctactccagcgcctaccaagtgtttgatagaatgccccaacaacaacttcactcgggcaacgacgagttcaagtcacattggtgcggatactgctccaacagctacctgggagctaggagacaacaaggacaagggccacgccccctgcatcgtcgccaaggactcacccgaggtcacgcccaccatgtgttcgaagaaatactccggtcctaccatcaagcccgatctcactatggctgtagtggttacgtccgccaccactgctgtggcctctatggagttggtagctgctgggaatgcaatcggtgccactgacatcaacaatcttgaccaccccaaggtgacgcatgctaagtgttcgatgtctagctccggcgtcaaacagggcactgaacaagttgtgcttgcgtttccgcttatggctagccctatggagttcatgacatcattggtagaaccatctccacccacagggctgaagcttggtgatgccatttgcgtgggagatcaggtgcctatgaagtgttcaatgaaatgtactgagagtgacaataagccacagatggaacaccccaagagaaacccattgccacctgcctggtcaggatggaagaagtggtatatgacctggactacaatcaatcatcataggatgagattatatttcgtcccaccctggcctccaccaagtctagtaagttctttggcatgggtgcatttttgtattggagctcttatatttcaaagggtggttttatcaaatgaaatggttgagttggagccctggcctccaccacatgaagcaagtttcagaattttgcctttccaaactagtagcaggaaatgttgcaattatatcactgctttgagtataattgcatgggatgagaagaggacaaggagtagtagaattattgacactagttttgaggaagggacacaggaatgttggaatccatatctagccttgccaatcctcagctattttaggaccagattgcaatggatgccaccttggctgccattagttggtttgctggaagctagagtagggaagggttgcactactgattttgctgcaagtataattccttggaatgagcaaaagaaaatgattactattgaaacttccacttgctttgagcagaaaatgcaccaaattcgggctttgattttccacgtcagtttgacatcacttactagcaaggaaagcaatctagttatttgtgatcctgaatcattatctatttggttatcatatgttgatctctgggggatgttgctcaactactacccaactatagtggagaaatggaatatgagaataatttgcatgttgatatcagaatctgaatcatgtttggaatcaaattacattggtttgaatgttgaaagagatttgctatatatgattgctgaagaaaaaggttgcaaaaggtga
More
|
|||||||
| Protein seq | MGLSGSRVGRTWAGQPIAMRPKQTEESSIQAAASATPGGIERSFGLGGAEAPGGGGDLGGRQSEMPKEDQRTSKPVPINSTMNKEEKWLEKALDRILEKFEQMEAKRMQEEKINQIFQKLEEIEVRRSKASEEIIEAIRATTAVLKAKSPTAPIAPPTPAPTKCLIECPNNNFTRATTSSSHIGADTAPTATWELGDNKDKGHAPCIVAKDSPEVTPTMCSKKYSGPTIKPDLTMAVVVTSATTAVASMELVAAGNAIGATDINNLDHPKVTHAKCSMSSSGVKQGTEQVVLAFPLMASPMEFMTSLVEPSPPTGLKLGDAICVGDQVPMKCSMKCTESDNKPQMEHPKRNPLPPAWSGWKKWYMTWTTINHHRMRLYFVPPWPPPSLVSSLAWVHFCIGALIFQRVVLSNEMVELEPWPPPHEASFRILPFQTSSRKCCNYITALSIIAWDEKRTRSSRIIDTSFEEGTQECWNPYLALPILSYFRTRLQWMPPWLPLVGLLEARVGKGCTTDFAASIIPWNEQKKMITIETSTCFEQKMHQIRALIFHVSLTSLTSKESNLVICDPESLSIWLSYVDLWGMLLNYYPTIVEKWNMRIICMLISESESCLESNYIGLNVERDLLYMIAEEKGCKR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0009900 | OsLima_10g0009900.02 | Chr10 | 15723598 | 15724432 | + | NAM | ||
| CDS seq | atggaagcagacactaattcaattcatgatgagaagtatacttttgggttagttcctacagtggtgttgatcaagcgaggttgtcactgtttgcagcatatcaaattgttgggaatccatgttggcaagcaattcgtaacagtgccattgtcatgcatcacccaggagtactttacatggagtaagcagttattcaagctaaagctacttgctctattcttcttcaatgatgggggcatcgaaagatcatttggacttggcggagctgaagctcccggcggcggcggtgacttgggcggccgggtttcacgtaaacagaagtataccactgcggcattggcattaGgggatgttaatcacgagattcggcggccattgatttcctacgttgcttgcatatggaaagcaaatacatgcttgcatggaaacctaggaaatcaaaaggcaaggtag
More
|
|||||||
| Protein seq | MEADTNSIHDEKYTFGLVPTVVLIKRGCHCLQHIKLLGIHVGKQFVTVPLSCITQEYFTWSKQLFKLKLLALFFFNDGGIERSFGLGGAEAPGGGGDLGGRVSRKQKYTTAALALGDVNHEIRRPLISYVACIWKANTCLHGNLGNQKAR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g26490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0010030 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0010120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009990 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0010350 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0010090 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0236300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0010120 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0256100 | RBH | 0.0107075 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0010300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009910 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0010400 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G010220 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0010180 | RBH | 0.0 | 0.0 | 0.000000 |
