Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0009650 | OGI:10044800 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:15416458-15418423 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacaccgcaccagccgcagaaatgctaagcaaatctgcagtatgctttatttgtagggtgatctcatgcaagcagtcataaatagcatgactatccatatgtgacttgtccttcacgataaattcatgaaccacaccattcaactcaatgcagctacacccaggaactttctccactcccaaatgtctcatcatagccctgactttgtcagccttcttcctcatgttcgcttctgcatacatattagccagtagcacatagattccactatcactaggatcaatttctaccaatttcattgctgccttttctccaagagagatattaccttgcatcctacaagcaaagaagatagcaccccaaactactgcatcaggttccataggcatagtgtttactagctgctctgcttcgtctaaatggcctgccctgcctagtaagtctatcatacatgaataatgtttcattttcctctcaagatgatattttgtctccatcagagagaaaaattcccgaccttctttcaccaaaccagcatgacagcatgctgaaagaactcctataaacgtaatctcatctggcttctgtccaagctctatcattgtccggaagtgctctatggcctcattggcatgtccatgatttgctagaccacatatcattgctgtccatgtgagtgcatttttctcgggaatttctttgaaaatgtggatagctttctcaatgtttccacacttagcgtacatgtcaatgagagatgtgccaagcgcaacactaaatacaaggcgatgtttctcaatgtaccggtgaacccacatccccatttctaatgctccgagctgcgaacaagcagttagaagattgaccattgtgatctcatcaggcaccacacttgcttcctgcatctcatgaaacaaggaaagggcctccttgcactgcttacactgcacataaccggtcatgagtgcattccatgggaacacatccctttcaggcatctcatcaaacactttacgtgcatcgtccatcaatccgaacttggcaaaccccacgatcatcgttgtccaagagacaactgtcctgtgctcgatcctctcgaacacagactttgccatctctaaactgccacatttgatgtacatatccatcagcgcattcatcagcctcacagtgcaactcactccgtcactatccacgaacccatgaagccgcctcccaagctccaggtcacgcatctgcccgcaccccgacacagccgcgatcatcgtgacctcatcaggcctcaccactgcatcctctgccaccatcctccagaacagctccagcgcctccgctgggttcccccgccgcacgtaccctccgatcagcgtgttccacgacaccaagtccctcacaggacttcggtcgaacagcctgcgtgcgtcctccatgggcccgcggatcgatagtaagtgcgtggccgcgttcaccacgaagacgtcggagtcgaggccgaggcggaggacgtgcgcgagggccgcgtcgccgtatccccactcccgcaggcgcgcgcaggccttgagaaggaacgggaacgtgaggtggtcggggcgcgcggtcccggagcggaggagggcgcggtagagcgggaggcagcggcggacgacgccgtggccatggcggtcgccgtcgtcggagagggagagtgctcggatggcggcgttgtaggcggaggccgggagcgaggagaggaGCgcgagcgcgtggcggagcggggagggcggcgaggtgcgggcgtccgtggcggtggcggtggtggagagcgcgtaggcggcggcgaggagggaggagaagtctcgaaggaggccggcggcgaggaggtgggcgtggatctggaggaggcggcggagcgggggcggcgggcggcgcgcggagaggagggcgaggagacgggaagacggaggcggaggcggcatcgtttgggga
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| CDS seq | atgccgcctccgcctccgtcttcccgtctcctcgccctcctctccgcgcgccgcccgccgcccccgctccgccgcctcctccagatccacgcccacctcctcgccgccggcctccttcgagacttctcctccctcctcgccgccgcctacgcgctctccaccaccgccaccgccacggacgcccgcacctcgccgccctccccgctccgccacgcgctcgcGCtcctctcctcgctcccggcctccgcctacaacgccgccatccgagcactctccctctccgacgacggcgaccgccatggccacggcgtcgtccgccgctgcctcccgctctaccgcgccctcctccgctccgggaccgcgcgccccgaccacctcacgttcccgttccttctcaaggcctgcgcgcgcctgcgggagtggggatacggcgacgcggccctcgcgcacgtcctccgcctcggcctcgactccgacgtcttcgtggtgaacgcggccacgcacttactatcgatccgcgggcccatggaggacgcacgcaggctgttcgaccgaagtcctgtgagggacttggtgtcgtggaacacgctgatcggagggtacgtgcggcgggggaacccagcggaggcgctggagctgttctggaggatggtggcagaggatgcagtggtgaggcctgatgaggtcacgatgatcgcggctgtgtcggggtgcgggcagatgcgtgacctggagcttgggaggcggcttcatgggttcgtggatagtgacggagtgagttgcactgtgaggctgatgaatgcgctgatggatatgtacatcaaatgtggcagtttagagatggcaaagtctgtgttcgagaggatcgagcacaggacagttgtctcttggacaacgatgatcgtggggtttgccaagttcggattgatggacgatgcacgtaaagtgtttgatgagatgcctgaaagggatgtgttcccatggaatgcactcatgaccggttatgtgcagtgtaagcagtgcaaggaggccctttccttgtttcatgagatgcaggaagcaagtgtggtgcctgatgagatcacaatggtcaatcttctaactgcttgttcgcagctcggagcattagaaatggggatgtgggttcaccggtacattgagaaacatcgccttgtatttagtgttgcgcttggcacatctctcattgacatgtacgctaagtgtggaaacattgagaaagctatccacattttcaaagaaattcccgagaaaaatgcactcacatggacagcaatgatatgtggtctagcaaatcatggacatgccaatgaggccatagagcacttccggacaatgatagagcttggacagaagccagatgagattacgtttataggagttctttcagcatgctgtcatgctggtttggtgaaagaaggtcgggaatttttctctctgatggagacaaaatatcatcttgagaggaaaatgaaacattattcatgtatgatagacttactaggcagggcaggccatttagacgaagcagagcagctagtaaacactatgcctatggaacctgatgcagtagtttggggtgctatcttctttgcttgtaggatgcaaggtaatatctctcttggagaaaaggcagcaatgaaattggtagaaattgatcctagtgatagtggaatctatgtgctactggctaatatgtatgcagaagcgaacatgaggaagaaggctgacaaagtcagggctatgatgagacatttgggagtggagaaagttcctgggtgtagctgcattgagttgaatggtgtggttcatgaatttatcgtgaaggacaagtcacatatggatagtcatgctatttatgactgcttgcatgagatcaccctacaaataaagcatactgcagatttgcttagcatttctgcggctggtgcggtgtag
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| Protein seq | MPPPPPSSRLLALLSARRPPPPLRRLLQIHAHLLAAGLLRDFSSLLAAAYALSTTATATDARTSPPSPLRHALALLSSLPASAYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHLLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHMDSHAIYDCLHEITLQIKHTADLLSISAAGAV |
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| Function | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial [UniProtKB/Swiss-Prot:Q9SJZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0009650 | OsLima_10g0009650.01 | Chr10 | 15416458 | 15418423 | - | NAM | ||
| CDS seq | atgccgcctccgcctccgtcttcccgtctcctcgccctcctctccgcgcgccgcccgccgcccccgctccgccgcctcctccagatccacgcccacctcctcgccgccggcctccttcgagacttctcctccctcctcgccgccgcctacgcgctctccaccaccgccaccgccacggacgcccgcacctcgccgccctccccgctccgccacgcgctcgcGCtcctctcctcgctcccggcctccgcctacaacgccgccatccgagcactctccctctccgacgacggcgaccgccatggccacggcgtcgtccgccgctgcctcccgctctaccgcgccctcctccgctccgggaccgcgcgccccgaccacctcacgttcccgttccttctcaaggcctgcgcgcgcctgcgggagtggggatacggcgacgcggccctcgcgcacgtcctccgcctcggcctcgactccgacgtcttcgtggtgaacgcggccacgcacttactatcgatccgcgggcccatggaggacgcacgcaggctgttcgaccgaagtcctgtgagggacttggtgtcgtggaacacgctgatcggagggtacgtgcggcgggggaacccagcggaggcgctggagctgttctggaggatggtggcagaggatgcagtggtgaggcctgatgaggtcacgatgatcgcggctgtgtcggggtgcgggcagatgcgtgacctggagcttgggaggcggcttcatgggttcgtggatagtgacggagtgagttgcactgtgaggctgatgaatgcgctgatggatatgtacatcaaatgtggcagtttagagatggcaaagtctgtgttcgagaggatcgagcacaggacagttgtctcttggacaacgatgatcgtggggtttgccaagttcggattgatggacgatgcacgtaaagtgtttgatgagatgcctgaaagggatgtgttcccatggaatgcactcatgaccggttatgtgcagtgtaagcagtgcaaggaggccctttccttgtttcatgagatgcaggaagcaagtgtggtgcctgatgagatcacaatggtcaatcttctaactgcttgttcgcagctcggagcattagaaatggggatgtgggttcaccggtacattgagaaacatcgccttgtatttagtgttgcgcttggcacatctctcattgacatgtacgctaagtgtggaaacattgagaaagctatccacattttcaaagaaattcccgagaaaaatgcactcacatggacagcaatgatatgtggtctagcaaatcatggacatgccaatgaggccatagagcacttccggacaatgatagagcttggacagaagccagatgagattacgtttataggagttctttcagcatgctgtcatgctggtttggtgaaagaaggtcgggaatttttctctctgatggagacaaaatatcatcttgagaggaaaatgaaacattattcatgtatgatagacttactaggcagggcaggccatttagacgaagcagagcagctagtaaacactatgcctatggaacctgatgcagtagtttggggtgctatcttctttgcttgtaggatgcaaggtaatatctctcttggagaaaaggcagcaatgaaattggtagaaattgatcctagtgatagtggaatctatgtgctactggctaatatgtatgcagaagcgaacatgaggaagaaggctgacaaagtcagggctatgatgagacatttgggagtggagaaagttcctgggtgtagctgcattgagttgaatggtgtggttcatgaatttatcgtgaaggacaagtcacatatggatagtcatgctatttatgactgcttgcatgagatcaccctacaaataaagcatactgcagatttgcttagcatttctgcggctggtgcggtgtag
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| Protein seq | MPPPPPSSRLLALLSARRPPPPLRRLLQIHAHLLAAGLLRDFSSLLAAAYALSTTATATDARTSPPSPLRHALALLSSLPASAYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHLLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHMDSHAIYDCLHEITLQIKHTADLLSISAAGAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.061254 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0400250 | RBH | 0.249635 | 0.995209 | 0.305070 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g26070 | RBH | 0.167958 | 0.675032 | 0.078131 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0400250 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009770 | RBH | 0.096630 | 0.0 | 0.214702 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009870 | RBH | 0.0 | 0.0 | 0.533587 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009700 | RBH | 0.212796 | 2.268020 | 2.293855 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0010100 | RBH | 0.145094 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009850 | RBH | 3.036136 | 0.0 | 2.854832 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0231900 | RBH | 0.8625555 | 3.2202005 | 0.774642 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009880 | RBH | 0.196858 | 0.081316 | 0.123508 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0251500 | RBH | 1.050201 | 3.966609 | 3.736466 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0005180 | RBH | 0.043306 | 0.063517 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009600 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0010030 | RBH | 2.396472 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009640 | RBH | 0.234392 | 0.0 | 0.053120 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0010140 | RBH | 0.060054 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009950 | RBH | 0.235810 | 0.0 | 0.132678 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009920 | RBH | 0.240132 | 1.984078 | 0.384702 |
