Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0009500 | OGI:10044350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:15280690-15284996 | ||||||||
| Gene Symbol | TFIIE | ||||||||||
| DNA seq | tttgggcattacagtacgaaaatttgaagaacgcattgacaggcgaaggtatgccatctcaagctcttgaattgaTttatgttttacaaagctgaccgtctcagattatgctcccggaggccggaattacatttataacatacacaataagggtaGCAGGtatatAaagcattgcagtaggtagagtgaggacagaaataaatatctccacttgacgtcgaatAagcgtagagcaatcaagtgttgaggttctggaacagctcaggcagatgggcgttcgtgagcttggtccggcgtgtgatctcacgctgtttcttcttaggcttagccttgggctgcaccccattgatctgtgctgcagcccgccgtttagctgtgttggtcatgggcttgatgccattcttctggagctccttctcgatatccaccatgtcccgcggtaactccatctcccggaagagctgcttcaggtcatcgtcgaccttgatctttgcctttgggtcgttaggatacacaatgtcctcctgggaatccatgttcgataacagccaaacttcacctgctgccttcagtgcctatagaacagcagtactcagattaccaattgttgatcatatatgaagtaggttgcacgcacattttgactactagatttgcatggctctaatctgtgtcgggacaatacgcctacatagtgcaaataaggccaaaagtaTCtaataatggcacaaatgaagagtacaagaaatgtttttaaaaatgcatctatggacagctttatggacaaagatcttgcagggctgaactcccaatattatacatttctgttttactattgcaaggaaatttctggagttcacacagacatcattttcatgatggatacacattgaaaagacataggacctaaaataactttctgtaaggggcgtaagtatatttcaactgtatcatgccaattgaattttaccaaaagaacggacgtaaagcaataattggcagataaatccagtcttgtactaccattaactgtactcaggatgcgctcgtttcagcttataggattagattctcctcgttttccgttagcacgcttttcaaactactaaacggtctatttcgtgcgaaaactttctataaagaagttgtttaaaaaaatccaacaaatttattcatcaaaaatttatatattaatacttaattaatcatatgttaatcacatttctcgttttacgtgcggttaatcagcccatcctaactactgaaatgagcacaccctcagtgtgatattccagaaactcaggggaggaaaggagaaaagtattcagcatcttagggaggacaaaaaaggatccaattaaaaactaaaatggtgagcgttgaagaacagtaatatctaagacatcgcctcaaagcataatgtaagaaatttggctcacctgcaaatcttccattacagttgggtacgcatccttgacttccaccacagcaagaccctccggatactttcttaccaaaacaagtagttgatcttttcccttcaaatcatgcttggactgcacgtttatcaacaatgattaacgcgtgaaaccgtagaagtaaatcaacttcaaacaagatgggaagcctatgtaatcttaagactaaacatttctgatgttctcccataaataattgtcatcattatatcattttccccgaaacaagcattaaagaaaaacatttcatcatcaattacaaattccatggtcatgacaggtttagcttgccacaccagtgattaatagtcgaaatgcaatatgatattaaggcattaagcaatacttctgaattaattatgtttagtggggaacataggatgagagccattaatattatttcaggtaggaaggacagacaattgggtaaatataccaatgaaacaagtattgatgttagcaagactagtagttactggaataacaaacttctttaccttgtaagagaaacgtctcccatcataatgtactttaggattgttcctcagactgtcaaagacagacttattcccatggatatcaacataagttgtttcatttatttgctccgcagtaaaagcttgtcttgtctgcagattttgaagacatctcagttacaacaacaatacgcaatacagcattgctatttataaggaagttcacaaaacatttgttttgctatcattcatgaagacattggtaaaccattttgacaactataactaaaatgcagaaaatggaccagcgcggaaatcatcatagtgctctttaatactgtgattctataaattacataagttacttttaacaacttttgtagctacaagttgtatgggttgtcccttacaaattttcttcctgagcatataatcctggctgcaccactgtatgcagcattaatgcaaattaaatgtgtacttcacatattgcttataatagttattgtcaatgcatccttgtatctttaaccagatatcaacatgcacatcattgttgaacacagaataagcagcaaggcaccaaattttgcatatctgaatttgctggctgagtatcttgcatgcaccaaggggtgtgaaacaatgataaataacagaacaaagcaaaaggtaaacgtcttatgcactctcatataatatgttaacaattcaggctccattgatccaaaaaaaaaaaagaagtactaatcaagggcataatattctaatatggtaacagattatacagaaccattggcatttactggcatataaactcaatcaacatggtgacttgcaggatcattggaagacattacataccagaactgagggaacattcctgtttatactattatggaaaggaaaatgaaacaaggttgtagcttagtgagatttaccttgtacagcaattcaatgacaagtttgatctgtgctccaataggagatttcctaactgaattgatgtgttgtagcctttctgtatcatttgaaaacttaataggttgtggtggccttgctggagcggatggagcatttaccggttgggccctgtgctttggttttgaggtcgatgcagctatgctggccaaagatgattggcacctctcttgctgctgcttaaatttggagaggctatccttgagatccatctaaaattgacatgtttggtaagtgataggaataagaacaaacgatgaatagaaacagctgaacaggaaaatgcacactgtttactttggccttctcagtaaaacctatgagataaaaggttaaagcacatggtgtgaatggaccaaagcaggttttgacaacaacaaattaatcagctggtatcttaacatattgACaacaattcagcttcaaaggataagctactgcagataagctcaagactgccaccaagagacaccacgcagccaaaatatacttatgctcaaacattttcagtaaaaacttcccacatggttactcatttacgttctcgcaaccacatcaatttccaatcaatcgtatgctcctccccgttgcaaggcagaagcagctataggccctcgaattcgcgtccgaaatggccagtcagtttcgatgaaaatttctgatatggctccttatttacattattgcaatcacagtaatttggatttttggaaacaatctcataatatgggtacgtcttgcagtaagccagcactagctatgaattttgtgagggaacaaagtgtctgttgttactagtatggtaaaggcatatagaaaaagcttccagatctacaagagaagccagggttaacgcaaattcgaggtgaccgaaaagcgtgcctagggatgagaaggacgtgcgatttcgtacggatggtcaccggcgcgggaggattccgcgcggaagcacagacgcccgctgctcgcgcgggattggagatcggcgcgcggcggtcgaactcgaggtcaaggggacgaacggggagatcgactagggtaaaagagagagagaggccaatcaccaaccgcaaacccaccagaagatctcgcgcgctcgcgcgcgcaccagatcggggatcagctagggtttcgtaccggatcagctgcgctttccggttggtacgggtacggcggcgggcgggcggaggcgtcggaggaggagggggtgggggtagaggagaggagcgcggcgatcggatcggggattgtcaccggaggcttcgccccgccggcgagcacgGGGTgggtggaggcggcgggaggggggagagcgccgccgcggtcgctgctcggcctctctctcgcggagaaagagggaggaggaggaggt
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| CDS seq | atggatctcaaggatagcctctccaaatttaagcagcagcaagagaggtgccaatcatctttggccagcatagctgcatcgacctcaaaaccaaagcacagggcccaaccggtaaatgctccatccgctccagcaaggccaccacaacctattaagttttcaaatgatacagaaaggctacaacacatcaattcagttaggaaatctcctattggagcacagatcaaacttgtcattgaattgctgtacaagtccaagcatgatttgaagggaaaagatcaactacttgttttggtaagaaagtatccggagggtcttgctgtggtggaagtcaaggatgcgtacccaactgtaatggaagatttgcaggcactgaaggcagcaggtgaagtttggctgttatcgaacatggattcccaggaggacattgtgtatcctaacgacccaaaggcaaagatcaaggtcgacgatgacctgaagcagctcttccgggagatggagttaccgcgggacatggtggatatcgagaaggagctccagaagaatggcatcaagcccatgaccaacacagctaaacggcgggctgcagcacagatcaatggggtgcagcccaaggctaagcctaagaagaaacagcgtgagatcacacgccggaccaagctcacgaacgcccatctgcctgagctgttccagaacctcaacact
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| Protein seq | MDLKDSLSKFKQQQERCQSSLASIAASTSKPKHRAQPVNAPSAPARPPQPIKFSNDTERLQHINSVRKSPIGAQIKLVIELLYKSKHDLKGKDQLLVLVRKYPEGLAVVEVKDAYPTVMEDLQALKAAGEVWLLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREMELPRDMVDIEKELQKNGIKPMTNTAKRRAAAQINGVQPKAKPKKKQREITRRTKLTNAHLPELFQNLNT |
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| Function | General transcription factor IIE subunit 2 [UniProtKB/Swiss-Prot:Q54KJ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0009500 | OsLima_10g0009500.01 | Chr10 | 15280690 | 15284996 | - | NAM | ||
| CDS seq | atggatctcaaggatagcctctccaaatttaagcagcagcaagagaggtgccaatcatctttggccagcatagctgcatcgacctcaaaaccaaagcacagggcccaaccggtaaatgctccatccgctccagcaaggccaccacaacctattaagttttcaaatgatacagaaaggctacaacacatcaattcagttaggaaatctcctattggagcacagatcaaacttgtcattgaattgctgtacaagtccaagcatgatttgaagggaaaagatcaactacttgttttggtaagaaagtatccggagggtcttgctgtggtggaagtcaaggatgcgtacccaactgtaatggaagatttgcaggcactgaaggcagcaggtgaagtttggctgttatcgaacatggattcccaggaggacattgtgtatcctaacgacccaaaggcaaagatcaaggtcgacgatgacctgaagcagctcttccgggagatggagttaccgcgggacatggtggatatcgagaaggagctccagaagaatggcatcaagcccatgaccaacacagctaaacggcgggctgcagcacagatcaatggggtgcagcccaaggctaagcctaagaagaaacagcgtgagatcacacgccggaccaagctcacgaacgcccatctgcctgagctgttccagaacctcaacact
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| Protein seq | MDLKDSLSKFKQQQERCQSSLASIAASTSKPKHRAQPVNAPSAPARPPQPIKFSNDTERLQHINSVRKSPIGAQIKLVIELLYKSKHDLKGKDQLLVLVRKYPEGLAVVEVKDAYPTVMEDLQALKAAGEVWLLSNMDSQEDIVYPNDPKAKIKVDDDLKQLFREMELPRDMVDIEKELQKNGIKPMTNTAKRRAAAQINGVQPKAKPKKKQREITRRTKLTNAHLPELFQNLNT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0009500 | OsLima_10g0009500.02 | Chr10 | 15280693 | 15284994 | - | IsoSeq | ||
| CDS seq | atggggtgcagcccaaggctaagcctaagaagaaacagcgtgagatcacacgccggaccaagctcacgaacgcccatctgcctgagctgttccagaacctcaacacttgattgctctacgctTattcgacgtcaagtggagatatttatttctgtcctcactctacctactgcaatgcttTatataCCTGCtacccttattgtgtatgttataaatgtaattccggcctccgggagcata
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| Protein seq | MGCSPRLSLRRNSVRSHAGPSSRTPICLSCSRTSTLDCSTLIRRQVEIFISVLTLPTAMLYIPATLIVYVINVIPASGSI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr10 | 15282245 | 15283585 | - | OsLima_10g0009500.02 | OsLima_10g0009500.02,OsLima_10g0009500.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.696183 | 1.184628 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0397200 | RBH | 13.081758 | 11.790836 | 22.790985 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g25770 | RBH | 6.644849 | 5.103536 | 4.526151 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0397200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009620 | RBH | 3.527277 | 101.506416 | 43.620327 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009720 | RBH | 0.706094 | 19.302286 | 15.001128 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009550 | RBH | 8.214442 | 83.344826 | 41.024925 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009940 | RBH | 1.289606 | 2.019926 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009700 | RBH | 40.821014 | 79.407883 | 85.548874 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0229700 | RBH | 10.78404 | 20.2592735 | 18.8607795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009730 | RBH | 0.888988 | 5.431962 | 8.240476 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0248500 | RBH | 17.7336695 | 48.1024035 | 29.4964085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0005610 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009450 | RBH | 3.512835 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0009880 | RBH | 36.958015 | 75.967163 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009490 | RBH | 2.575060 | 0.0 | 6.170426 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009990 | RBH | 0.899118 | 33.658638 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009800 | RBH | 2.252285 | 20.556585 | 16.537117 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009770 | RBH | 6.493752 | 76.171211 | 35.324505 |
