Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0008840 | OGI:01011440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:14178649-14179356 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaatctgcttttcctgacatcaaaacctgcatggcatgcgtatcaaacgattcgaacaccatcccctccttcggcaccaagtcagaactaaccccaggtccctgccagtagtcaaatttttacaatcatgcatacggtgaaacttcacgctaacaggctaaacaaaacaatgcttaattgctttcagtaaggccttgttcatttaatccctcacccaaggggattgaaaaggattcgaaggggattaatttcctaactaatcccctccaatcccttcctcatggggatggataactaggcctaaaatggatccgactgtgcaaaatagattggaatgactccgatgcacaactgctatcaataaaatggatctgaaatgggggtttgtagggggggggggggggcgctcacatgggtgtaaaccatcgatcgactcggggtcgccagatccgccggctgcggagcacgaaaccgtgccgcctccacgctcctcattgggatcgactcctcctcgcaggtgcggcggccatggcacgccgacgacgtcgtcggcacatcaccatcgccgccgcggccgccgccgccgctacgcaagcgcgaagcgacgggcaaggcggcggaagcagatgatggagagggtggcgccagggtcggggccgagcacggcgactccggcgatcgcataccggcggcgaagtaggatcgcc
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| CDS seq | atgcgatcgccggagtcgccgtgctcggccccgaccctggcgccaccctctccatcatctgcttccgccgccttgcccgtcgcttcgcgcttgcgtagcggcggcggcggccgcggcggcgatggtgatgtgccgacgacgtcgtcggcgtgccatggccgccgcacctgcgaggaggagtcgatcccaatgaggagcgtggaggcggcacggtttcgtgctccgcagccggcggatctggcgaccccgagtcgatcgatggtttacacccatggacctggggttagttctgacttggtgccgaaggaggggatggtgttcgaatcgtttgatacgcatgccatgcaggttttgatgtcaggaaaagcagattga |
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| Protein seq | MRSPESPCSAPTLAPPSPSSASAALPVASRLRSGGGGRGGDGDVPTTSSACHGRRTCEEESIPMRSVEAARFRAPQPADLATPSRSMVYTHGPGVSSDLVPKEGMVFESFDTHAMQVLMSGKAD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0008840 | OsLima_10g0008840.01 | Chr10 | 14178649 | 14179356 | - | NAM | ||
| CDS seq | atgcgatcgccggagtcgccgtgctcggccccgaccctggcgccaccctctccatcatctgcttccgccgccttgcccgtcgcttcgcgcttgcgtagcggcggcggcggccgcggcggcgatggtgatgtgccgacgacgtcgtcggcgtgccatggccgccgcacctgcgaggaggagtcgatcccaatgaggagcgtggaggcggcacggtttcgtgctccgcagccggcggatctggcgaccccgagtcgatcgatggtttacacccatggacctggggttagttctgacttggtgccgaaggaggggatggtgttcgaatcgtttgatacgcatgccatgcaggttttgatgtcaggaaaagcagattga
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| Protein seq | MRSPESPCSAPTLAPPSPSSASAALPVASRLRSGGGGRGGDGDVPTTSSACHGRRTCEEESIPMRSVEAARFRAPQPADLATPSRSMVYTHGPGVSSDLVPKEGMVFESFDTHAMQVLMSGKAD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008980 | RBH | 0.0 | 0.0 | 0.482302 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009070 | RBH | 0.0 | 0.0 | 0.648786 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009290 | RBH | 0.082986 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009090 | RBH | 2.912266 | 2.436903 | 7.271394 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0213700 | RBH | 0.896825 | 3.397431 | 5.583868 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0228800 | RBH | 1.3053505 | 4.622321 | 9.0248025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0009220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
