Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0008650 | OGI:10040350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:13702583-13704452 | ||||||||
| Gene Symbol | OsbHLH045 | ||||||||||
| DNA seq | atctccattggccacccaccaccattgtcttctcctcccatattcttcacctcgctcgtcgtcgtcttcctccgccgccgccggccggtgcgggctggtgttcgttcacacttaccggccagccaccgcacgccattgctggcattggaaggtgatggcgctggaggcggtggtttactcccacggcggccatttcggcgggtacggcggcgggctgatgggcggcgccccggcggcgccgtgggatgtcttcgcagccgccgccggcggcggcggcgggagctgggacgatcccggcctgttcgcggcagaggcgtctcttgatgtgatccagggcgtggatgagtgggaggtggatcaggatcagcatgcttcttcttctaaggtggcggcgcggccgcctgtgaaggcggcggcggcggcggggaagaggaagaggcggcgggcgaaggcggcgaagaaccgggaggagatcgagagccagcggatgacccacattgccgtcgagcgaaaccgccgccgccagatgaacgagtacctcgccgtgctccgctccctcatgccaccttcctacgcccaaagggtaatctttttatttgttttcagatcaattctaaatttatcgaatttcaaaatcaatgcaccatcagaagataaatcagatcaaacccacatttcaaaatttacatctgttcaacatcgttttacttttacaccttcatggaaaacgaattgatagattttgttttctttttcttttctagggtgaccaagcatccatagttgggggagcaatcaactacgtgagggaactagagcagctgctccaaacactggaggcgagaaggaccatcaaggaccacatcgacggcggcgccggcgagtctccctCccccttcgccggcttcttcgccttcccacagtactccaccgccatctccggccatggcggcggcggcgatgcacacagcaggatcgtcgtcaagcctgcagagacgacgactacggccgccggtggcggcgccggcgcggcgatcgccgacatcgaggcgagcatggtggagggccacgccagcgtcaaggtgcaggcgcggcggcggccgaggcagctgctcaagctcgtcgccgggctccaccagctagggctcaccaccttgcatctcaacgtcaccaccgtcgccgccatggccatgtactccttcagcctcaaggtcagtctcaaccaccaatggtgttcgatttttcTttttcttatattttatattgatctgtttcatgatccaaccaacccacccgacttcaaatcctagcatctaccttgtttatttgacaaatgttaaaagtaatttagaggtggcaaatttgtttttttttcttaaggaaaatgtattaatatatattttatgtgaataaaATatatatttatgatttatgatgcgaagaataatgatttgtgatttggatgtataactgtaggtggaggatggatgtaagcttgggtctgtggaggagattgcaactgcagtgcatgagattctggagaggatgcaggaggagcaggcttttgctgatgccaaaactagcttgtgaattgtactgcctgcagttgcctactttcccagatgtgctccagctggggattctcttgtatgtaatggcacttggcagtgcaggcatcaaatgtttattgcgaactagtattagctagctagaaaatataatatttgagatatggtggttttggcatatattaagaagcagggagaggtttaattaactatatgtttggatcaattacttggtactgaaaggaaactAaaaaatgagagacgtcatgatatacaatgcactttacacgttgtttggtttg
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| CDS seq | atggcgctggaggcggtggtttactcccacggcggccatttcggcgggtacggcggcgggctgatgggcggcgccccggcggcgccgtgggatgtcttcgcagccgccgccggcggcggcggcgggagctgggacgatcccggcctgttcgcggcagaggcgtctcttgatgtgatccagggcgtggatgagtgggaggtggatcaggatcagcatgcttcttcttctaaggtggcggcgcggccgcctgtgaaggcggcggcggcggcggggaagaggaagaggcggcgggcgaaggcggcgaagaaccgggaggagatcgagagccagcggatgacccacattgccgtcgagcgaaaccgccgccgccagatgaacgagtacctcgccgtgctccgctccctcatgccaccttcctacgcccaaaggggtgaccaagcatccatagttgggggagcaatcaactacgtgagggaactagagcagctgctccaaacactggaggcgagaaggaccatcaaggaccacatcgacggcggcgccggcgagtctccctCccccttcgccggcttcttcgccttcccacagtactccaccgccatctccggccatggcggcggcggcgatgcacacagcaggatcgtcgtcaagcctgcagagacgacgactacggccgccggtggcggcgccggcgcggcgatcgccgacatcgaggcgagcatggtggagggccacgccagcgtcaaggtgcaggcgcggcggcggccgaggcagctgctcaagctcgtcgccgggctccaccagctagggctcaccaccttgcatctcaacgtcaccaccgtcgccgccatggccatgtactccttcagcctcaaggtggaggatggatgtaagcttgggtctgtggaggagattgcaactgcagtgcatgagattctggagaggatgcaggaggagcaggcttttgctgatgccaaaactagcttgtga
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| Protein seq | MALEAVVYSHGGHFGGYGGGLMGGAPAAPWDVFAAAAGGGGGSWDDPGLFAAEASLDVIQGVDEWEVDQDQHASSSKVAARPPVKAAAAAGKRKRRRAKAAKNREEIESQRMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLEARRTIKDHIDGGAGESPSPFAGFFAFPQYSTAISGHGGGGDAHSRIVVKPAETTTTAAGGGAGAAIADIEASMVEGHASVKVQARRRPRQLLKLVAGLHQLGLTTLHLNVTTVAAMAMYSFSLKVEDGCKLGSVEEIATAVHEILERMQEEQAFADAKTSL |
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| Function | Transcription factor bHLH96 [UniProtKB/Swiss-Prot:Q9C7T4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0008650 | OsLima_10g0008650.01 | Chr10 | 13702583 | 13704452 | + | NAM | ||
| CDS seq | atggcgctggaggcggtggtttactcccacggcggccatttcggcgggtacggcggcgggctgatgggcggcgccccggcggcgccgtgggatgtcttcgcagccgccgccggcggcggcggcgggagctgggacgatcccggcctgttcgcggcagaggcgtctcttgatgtgatccagggcgtggatgagtgggaggtggatcaggatcagcatgcttcttcttctaaggtggcggcgcggccgcctgtgaaggcggcggcggcggcggggaagaggaagaggcggcgggcgaaggcggcgaagaaccgggaggagatcgagagccagcggatgacccacattgccgtcgagcgaaaccgccgccgccagatgaacgagtacctcgccgtgctccgctccctcatgccaccttcctacgcccaaaggggtgaccaagcatccatagttgggggagcaatcaactacgtgagggaactagagcagctgctccaaacactggaggcgagaaggaccatcaaggaccacatcgacggcggcgccggcgagtctccctCccccttcgccggcttcttcgccttcccacagtactccaccgccatctccggccatggcggcggcggcgatgcacacagcaggatcgtcgtcaagcctgcagagacgacgactacggccgccggtggcggcgccggcgcggcgatcgccgacatcgaggcgagcatggtggagggccacgccagcgtcaaggtgcaggcgcggcggcggccgaggcagctgctcaagctcgtcgccgggctccaccagctagggctcaccaccttgcatctcaacgtcaccaccgtcgccgccatggccatgtactccttcagcctcaaggtggaggatggatgtaagcttgggtctgtggaggagattgcaactgcagtgcatgagattctggagaggatgcaggaggagcaggcttttgctgatgccaaaactagcttgtga
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| Protein seq | MALEAVVYSHGGHFGGYGGGLMGGAPAAPWDVFAAAAGGGGGSWDDPGLFAAEASLDVIQGVDEWEVDQDQHASSSKVAARPPVKAAAAAGKRKRRRAKAAKNREEIESQRMTHIAVERNRRRQMNEYLAVLRSLMPPSYAQRGDQASIVGGAINYVRELEQLLQTLEARRTIKDHIDGGAGESPSPFAGFFAFPQYSTAISGHGGGGDAHSRIVVKPAETTTTAAGGGAGAAIADIEASMVEGHASVKVQARRRPRQLLKLVAGLHQLGLTTLHLNVTTVAAMAMYSFSLKVEDGCKLGSVEEIATAVHEILERMQEEQAFADAKTSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.987221 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0376900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g23050 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0376900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008790 | RBH | 0.0 | 10.409940 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008850 | RBH | 0.0 | 0.756794 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008720 | RBH | 0.0 | 2.882421 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009090 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008870 | RBH | 0.0 | 18.648458 | 0.770562 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0207400 | RBH | 0.4508755 | 4.3244655 | 0.421327 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008830 | RBH | 0.0 | 0.112639 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0221100 | RBH | 4.004203 | 1.033989 | 2.7222235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006440 | RBH | 0.0 | 0.163538 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008640 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0009030 | RBH | 0.0 | 17.736658 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008620 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009160 | RBH | 0.000000 | 2.737136 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008910 | RBH | 0.0 | 1.243956 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008900 | RBH | 0.000000 | 0.000000 | 0.0 |
