Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0008570 | OGI:10040230 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:13611285-13618619 | ||||||||
| Gene Symbol | CAMTA3, OsCAMTA3 | ||||||||||
| DNA seq | acctccaaaaatcccccacaaaaagagaaaaaaagaaaaatcccaaaccccctcgcgcggaggccgagagagatcccctgctccgctccgatccccaggcgtgcgcgcgtgcggggctcgccgcgcgtcgcatggtggcggcgcggccgccggagcacacgcctcggcctcgataccccccaccacagccatggcggcggacgcgcggcgcttcgcggtcgtgccgcagctaggtgagcataacgcgggttagtagtagtagtatccttcggccgcgtcgtcgtcgctctggtccggatgggggacggacgccgcgcgtgtcgcgcgggggtgctttgtcggctcgatccgatctggtgtggtggatgggtggatggtcgtcgccggtcgcggtcaacgcgccggtcgtggttacctcgcggctattgctgggggctagcggagggattggtagagctgtagtggatttttttttTGgtttgtttggagttgtggaagatttttggttcgattctgctgcttcgagtgttggtgtagatcgggctcctactgttgggattgtctgacgggagctaccgtgagataggtttcatttctcggtgatagtctctctgattttttttagtccattgcttagtgattattactgttctagtaaacgaaatgcggtgtcgttgcatttagcgttgaatggagtaagtattgggctggattttggagcttggactgcagcgcgcacaatttagtttcgtacgaagagcagttggttgtgctactttttttggttcagtcatgcttttgttcccctttcgaaacgaggggatcatgttggctggcctgcagttctccacttgtgtggacaagagtgttagtagtatcagttggttctgaaagagaattttgttatgtgatgatgctgtctatgatttttttttgagaaatatggtgcattgtttaactgtcgctgactctgtgatctataaacagatattgcgcagatactgaaggaggctcaacaacgatggttgcgtcctgctgaaatttgcgaaatacttaaaaactacaaaagtttccgtattgcaccagaaccaccaaacaggcctcaaagtaggatacttgtctccttaattaaatgttgctctaatttgttgtgcttttgtattgaggttatttttatcagtgaatcatcataattaaaaataatcatttgaaaaaaatactaggagaaacatgaaatttgattgcatgctaatttgtgaaaatatctttaaccttaataatatgaagttctgaacttctatcttatagctgcctgcatgtattatggtagttttagcttattatttaccttttgtgccacgttgtattcctgtttaatttctgtgtgcatcataagtaaataaaacatactacctccgtttttttatgtatgacgccgttgacttttcacataatgtttgaccattcatccttttcaaaaatttagtataaatatgtagaagtataagttaagattatagtttctttgatggtaaaacaagtcacaacaaaataaatgacatttatatatatatttttttgaataagacaaaggatcaaacgtcacgtcaaaagccaacaacatcatagatcaaacattaaaaaacggaggtagtaatatttattactgggctctttatgactgttacaatggaacacttgtcaggctgcattagtgaggtatcaatatgcatttcttttaccatcaaagagttattctattctcttgactttgatgcctttccttcatgaaaaaaaatactgtattgcacataaaacaagatgtactggtatgtgaatttaaaaatctactttttatttacctgatcgtttagttgcaacactagtaaacagttcacttttcttacaataccaattaccattgcatgcatgtaattgaagttgataaagtgcctataccatcctcaagttcaatatttctgatcattcttgccctgcctaggtggctcgcttttcctatttgatcggaaagtattgagatacttcaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaagcacatgaaaggctgaaagtaagtcactttgcgttatgtagtgattatttatcaatgtgaataagactcactgttgtttgccaatccagtctggaagtattgatgtgcttcactgctactatgcacatggagaagagaatgagaacttccaaaggaggacttactggatgttggaagagtaagccgaattcttccaaaaatattacatgttcgtttatgttattagcaatgctataattgttctgagcctatgaggctatgaacacaaattctttgtcagaggcgcataaatgaacacacttgcatgtagagtttgcatacagaattttagttatttgcatttggataaccttatagagttacctttgcttttgcagggattttatgcacattgttcttgtacattatcttgagaccaaggtattactgaactctcctatctttcacttaatgattagcttatatctaccttaatctacattccatctttcggtatgcaaaagttacatgcattgtttagcgccataatgtttgattcctttttctggcgctttcattctttttattgtggactttatttattttaattttttattgaccaaatactagtactatattgcaccactatgctacgagattgtagtactatgattatttagttttgatgattgatattcacataatttgggatatcacttatgtatgctttcgtgcttgctagcaatctttacatgcatttttaagaaatacacatttttcctttgtatttgtacttaaggtggcgcttgttacgtgtaatgatttttgaattaattatatgtcagctaccaattccacgatacagaaaacagcggtatgataccaactctaggagttacatgatattgacctgacttaatgtaagtctcatattacgaattagataaatattaggtgttaacatctgattttttttgtagtaccattatataatgataatgaatatgtcttaaaaattagacggaacagtgtgtaaTttttttcatttgtatagttggaactagttttagaaacagagtgctattattttctgatttatctgcttagtgaattttcattcatttccatttccatttctgtagttcaagtcagttttcttatttcacatcgtgaatagaattcctcattgcctgttgaaatggagagctttttcctctcttgttttgctcttgtaagaagtcacttaaccctcattgcatcgtgctatgcgactatgaacttcagggtgggaaatctcgtactaggggcaacaatgacatgcatcaagcagctgttatggatagtccattaagtcaattaccttcacaaactatagatggtgaaagctcacttagtggacagttctctgaatatgaagaggcagaatcaggtaaaaatgttggctgtcttcttcggttatctataatgataatgaaaatactacacagaaaaaaatagtttcactgatacatattccaactatgcacagcgtatctaaagcaaaattcggtgcagcagatatttattcaggaggaaccggataccactctttcactcagatgcagcagcagcaaaatggaattggacctgtgactgatgcttctatgttcagttctcgtgtttctgcttcatccataggtaattaacaagagaaatacgcatgtggtttgaacctaagtgaagtcgatattaacttcttttgtcgtcacatgatttcaggtaattatcagggacaacatgctatgggacatacaacaaacttctattctagtagtcaacatgattcacctcttgttctcagtgatccaaaccttgaacttgaaaataatggacatgagtcattgtggaatggggttatgaaaactgatgaagggactgttcaaatgactcatctacaacctcctgttcatcctgagcaaggcatgttcaccacagaaggccaaggggttgaatatttgacattcgatgaagtatattctgatggactcagtctgaaggatataggtgctgcaggtgctgatgtagaaccattctggcaggtatgtgcaagttttgtaatagatgctaaaatattatcctgttgtaaagttaatagttgctctcatatggtaattcttccccatattgtgcgctaaaaatcaaagtttcaactctcatatggtaattcttccctatattggcgctcttggtgcttttgtctggtttagttttcttcaaacagctatctaacggaagccattgcatttcagctctctagtgctactgctgatatatctgcaacagagaacagcgtccaacaaaatgatggatctctaggggcagctattggcttcccatttttgaaaactcagtcatccaatctgtctgacatcctgaaagacagctttaagaaatctgacagttttacaagatggatgagcaaagagcttcttgatgttgaggattcgcaaattcagtctagctcaggggcatactggaacactgaagaggcagatagtatcatcgaagcatcaagccgtgagccactggatcagttcactgtggcccctatggttttgcaagatcagctattcagtatagttgatttttcgccaagctggacatatgcaggctcgaagaccaaggtatagttttctgatggtgaaacttttcagctttttttttgttgaaattccagctaaaatagtgttctccaggtgctcacaaatatgttgtatgcaatgtaggttttagttactggtagattcttacatgctaatgaagtcacggagagatgcaagtggtcatgcatgtttggagaagttgaaattcaagcggagatttcagcagatgggactctccgatgttattctcccccgcataaaccaggcagagtccctttctatgtcacctgttccaacaggttagcctgtagtgaagtacgtgagtttgaatttcgaccaagtgactctcaatacatggatgctcctagcccgcttggtgcaaccaacaaagtttatttccagatacgtcttgacaacctattgtccctggggccagatgtgtaccaagctactataactaaccccagtaaggagatgatcgacttgagcaagaagattagttcactgttggcaaacaatgatgagtggtccaagttacttaaattggctgatgataacgagcctcttagccatgatcagcaggatcagtatgctgaaaacttaattaaggaaaaattgcatgtctggcttctccataaagtaggcaatggtggcaaaggacccagtgtgttagatgatgaggggctgggtgttcttcatcttgcagctgcccttggttatgattgggccataaggccaactgttactgctggtgtgaacataaatttcagagattttcatggatggactgcattacattgggctgcattttgtggcaggtaagtgactaaaatggtgaattaggctaagagtatgttttttctttaatttttgaatattggacagtaaatactctttgatctatgttgcagagaacggactgtagtagcacttattgcactgggagcagctcctggagctttgacagatccacatcctaattaccctgctgaaagcacaccagcagaccttgcatctgctaacggacataagggcatctctggtttcctggcagaatcctctctgacaagtcatcttcaagccctcaatctgaaggaagccaatatgtctgaaatatctggtctacctggtattggagatataactgagagaaatgcatctcagcctgcaattggagattccttaggtgctgttcgaaatgccgctcaagctgctgctcgaatatatcaagttttcagggtgcaatccttccagaggaaacaagcggtccaatatgagggtgacaaaggtggcatatcggacgaacacacactttcactcctgtctatgaagccatccaagtcaggccagcttgatcccctgcatgctgcagcatctcgtatacaaaataaatataggggatggaaggggagaaaggaatttcttctcttcagacaacgaattgtgaagatccaggtactgtatattatatatatgaaatccaacagataatttagtttcccatatttctcaatagttgcattgctcttatcaaaattttgtttgtctgccactgggaatattaatgaacacctggatggatattaagatcaagagtactatagtgggataatctttgttttaccgtctaatccgtcattggctaatgctgatatatatgtatatatatctttttgctggctaggctcatgtgcgaggccaccaggtgaggaagcattatcggaaaatagtttggtctgttgggatagtggagaaagttatattgcgctggaggcgaagaagggctgggttacgtggttttaggccTAcagaaggtgcaatagagagcagcagtggtggcacaagtagcaatttggtcacagataaacctgctggagaTgattatgatttcttgcaagaaggacggaagcaaactgaagaaaggctgcagaaagctcttgccagagtgaagtccatggttcaatacccagaagcaagggatcagtaccaaaggattttgaatgttgtttcgaaaatgcaagagtctcaggtaatgtcctggttccctataaacaagtagcattAagcgttgctgttatgtcttactctgcaacttttatccaaatggaacacttacgccatttgtccctgctgatatgatgacagaccgtgcaagaaaagattttagacgaatcaaccgagatggatgaaggtgatttcatgagtgaattcaaggagctgtgggatgatgatacaccactccctggttatttctagtgttctagactaactggtggtgtctctgtataTCtcttctcttcagttctgctgaattgacacctgccgataacccaaactctcaacatagcatgaatagcatgatcttAaaatcttgaatgcttggatttggattcagttgtggtattcttgcttttatgttatagcgttatgtacagtagaatcttatattaccattgaaggagccatgtatatgcagtatgaaactaatgtagaaagttggtggttgtatcatttgaattcaaagctgcatgtgtgctaagcaatttcttgcattagagaaattcgatgtagtgtggtaacttttattgaaaggatgcagtgtggtaattgATac
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| CDS seq | atggcggcggacgcgcggcgcttcgcggtcgtgccgcagctagatattgcgcagatactgaaggaggctcaacaacgatggttgcgtcctgctgaaatttgcgaaatacttaaaaactacaaaagtttccgtattgcaccagaaccaccaaacaggcctcaaagtggctcgcttttcctatttgatcggaaagtattgagatacttcaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaagcacatgaaaggctgaaatctggaagtattgatgtgcttcactgctactatgcacatggagaagagaatgagaacttccaaaggaggacttactggatgttggaagaggattttatgcacattgttcttgtacattatcttgagaccaagggtgggaaatctcgtactaggggcaacaatgacatgcatcaagcagctgttatggatagtccattaagtcaattaccttcacaaactatagatggtgaaagctcacttagtggacagttctctgaatatgaagaggcagaatcaggaggaaccggataccactctttcactcagatgcagcagcagcaaaatggaattggacctgtgactgatgcttctatgttcagttctcgtgtttctgcttcatccataggtaattatcagggacaacatgctatgggacatacaacaaacttctattctagtagtcaacatgattcacctcttgttctcagtgatccaaaccttgaacttgaaaataatggacatgagtcattgtggaatggggttatgaaaactgatgaagggactgttcaaatgactcatctacaacctcctgttcatcctgagcaaggcatgttcaccacagaaggccaaggggttgaatatttgacattcgatgaagtatattctgatggactcagtctgaaggatataggtgctgcaggtgctgatgtagaaccattctggcagttttcttcaaacagctatctaacggaagccattgcatttcagctctctagtgctactgctgatatatctgcaacagagaacagcgtccaacaaaatgatggatctctaggggcagctattggcttcccatttttgaaaactcagtcatccaatctgtctgacatcctgaaagacagctttaagaaatctgacagttttacaagatggatgagcaaagagcttcttgatgttgaggattcgcaaattcagtctagctcaggggcatactggaacactgaagaggcagatagtatcatcgaagcatcaagccgtgagccactggatcagttcactgtggcccctatggttttgcaagatcagctattcagtatagttgatttttcgccaagctggacatatgcaggctcgaagaccaaggttttagttactggtagattcttacatgctaatgaagtcacggagagatgcaagtggtcatgcatgtttggagaagttgaaattcaagcggagatttcagcagatgggactctccgatgttattctcccccgcataaaccaggcagagtccctttctatgtcacctgttccaacaggttagcctgtagtgaagtacgtgagtttgaatttcgaccaagtgactctcaatacatggatgctcctagcccgcttggtgcaaccaacaaagtttatttccagatacgtcttgacaacctattgtccctggggccagatgtgtaccaagctactataactaaccccagtaaggagatgatcgacttgagcaagaagattagttcactgttggcaaacaatgatgagtggtccaagttacttaaattggctgatgataacgagcctcttagccatgatcagcaggatcagtatgctgaaaacttaattaaggaaaaattgcatgtctggcttctccataaagtaggcaatggtggcaaaggacccagtgtgttagatgatgaggggctgggtgttcttcatcttgcagctgcccttggttatgattgggccataaggccaactgttactgctggtgtgaacataaatttcagagattttcatggatggactgcattacattgggctgcattttgtggcagagaacggactgtagtagcacttattgcactgggagcagctcctggagctttgacagatccacatcctaattaccctgctgaaagcacaccagcagaccttgcatctgctaacggacataagggcatctctggtttcctggcagaatcctctctgacaagtcatcttcaagccctcaatctgaaggaagccaatatgtctgaaatatctggtctacctggtattggagatataactgagagaaatgcatctcagcctgcaattggagattccttaggtgctgttcgaaatgccgctcaagctgctgctcgaatatatcaagttttcagggtgcaatccttccagaggaaacaagcggtccaatatgagggtgacaaaggtggcatatcggacgaacacacactttcactcctgtctatgaagccatccaagtcaggccagcttgatcccctgcatgctgcagcatctcgtatacaaaataaatataggggatggaaggggagaaaggaatttcttctcttcagacaacgaattgtgaagatccaggctcatgtgcgaggccaccaggtgaggaagcattatcggaaaatagtttggtctgttgggatagtggagaaagttatattgcgctggaggcgaagaagggctgggttacgtggttttaggccTAcagaaggtgcaatagagagcagcagtggtggcacaagtagcaatttggtcacagataaacctgctggagaTgattatgatttcttgcaagaaggacggaagcaaactgaagaaaggctgcagaaagctcttgccagagtgaagtccatggttcaatacccagaagcaagggatcagtaccaaaggattttgaatgttgtttcgaaaatgcaagagtctcagaccgtgcaagaaaagattttagacgaatcaaccgagatggatgaaggtgatttcatgagtgaattcaaggagctgtgggatgatgatacaccactccctggttatttctag
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| Protein seq | MAADARRFAVVPQLDIAQILKEAQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENFQRRTYWMLEEDFMHIVLVHYLETKGGKSRTRGNNDMHQAAVMDSPLSQLPSQTIDGESSLSGQFSEYEEAESGGTGYHSFTQMQQQQNGIGPVTDASMFSSRVSASSIGNYQGQHAMGHTTNFYSSSQHDSPLVLSDPNLELENNGHESLWNGVMKTDEGTVQMTHLQPPVHPEQGMFTTEGQGVEYLTFDEVYSDGLSLKDIGAAGADVEPFWQFSSNSYLTEAIAFQLSSATADISATENSVQQNDGSLGAAIGFPFLKTQSSNLSDILKDSFKKSDSFTRWMSKELLDVEDSQIQSSSGAYWNTEEADSIIEASSREPLDQFTVAPMVLQDQLFSIVDFSPSWTYAGSKTKVLVTGRFLHANEVTERCKWSCMFGEVEIQAEISADGTLRCYSPPHKPGRVPFYVTCSNRLACSEVREFEFRPSDSQYMDAPSPLGATNKVYFQIRLDNLLSLGPDVYQATITNPSKEMIDLSKKISSLLANNDEWSKLLKLADDNEPLSHDQQDQYAENLIKEKLHVWLLHKVGNGGKGPSVLDDEGLGVLHLAAALGYDWAIRPTVTAGVNINFRDFHGWTALHWAAFCGRERTVVALIALGAAPGALTDPHPNYPAESTPADLASANGHKGISGFLAESSLTSHLQALNLKEANMSEISGLPGIGDITERNASQPAIGDSLGAVRNAAQAAARIYQVFRVQSFQRKQAVQYEGDKGGISDEHTLSLLSMKPSKSGQLDPLHAAASRIQNKYRGWKGRKEFLLFRQRIVKIQAHVRGHQVRKHYRKIVWSVGIVEKVILRWRRRRAGLRGFRPTEGAIESSSGGTSSNLVTDKPAGDDYDFLQEGRKQTEERLQKALARVKSMVQYPEARDQYQRILNVVSKMQESQTVQEKILDESTEMDEGDFMSEFKELWDDDTPLPGYF |
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| Function | Calmodulin-binding transcription activator 3 [UniProtKB/Swiss-Prot:Q8GSA7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0008570 | OsLima_10g0008570.01 | Chr10 | 13611285 | 13618619 | + | NAM | ||
| CDS seq | atggcggcggacgcgcggcgcttcgcggtcgtgccgcagctagatattgcgcagatactgaaggaggctcaacaacgatggttgcgtcctgctgaaatttgcgaaatacttaaaaactacaaaagtttccgtattgcaccagaaccaccaaacaggcctcaaagtggctcgcttttcctatttgatcggaaagtattgagatacttcaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaagcacatgaaaggctgaaatctggaagtattgatgtgcttcactgctactatgcacatggagaagagaatgagaacttccaaaggaggacttactggatgttggaagaggattttatgcacattgttcttgtacattatcttgagaccaagggtgggaaatctcgtactaggggcaacaatgacatgcatcaagcagctgttatggatagtccattaagtcaattaccttcacaaactatagatggtgaaagctcacttagtggacagttctctgaatatgaagaggcagaatcaggaggaaccggataccactctttcactcagatgcagcagcagcaaaatggaattggacctgtgactgatgcttctatgttcagttctcgtgtttctgcttcatccataggtaattatcagggacaacatgctatgggacatacaacaaacttctattctagtagtcaacatgattcacctcttgttctcagtgatccaaaccttgaacttgaaaataatggacatgagtcattgtggaatggggttatgaaaactgatgaagggactgttcaaatgactcatctacaacctcctgttcatcctgagcaaggcatgttcaccacagaaggccaaggggttgaatatttgacattcgatgaagtatattctgatggactcagtctgaaggatataggtgctgcaggtgctgatgtagaaccattctggcagctctctagtgctactgctgatatatctgcaacagagaacagcgtccaacaaaatgatggatctctaggggcagctattggcttcccatttttgaaaactcagtcatccaatctgtctgacatcctgaaagacagctttaagaaatctgacagttttacaagatggatgagcaaagagcttcttgatgttgaggattcgcaaattcagtctagctcaggggcatactggaacactgaagaggcagatagtatcatcgaagcatcaagccgtgagccactggatcagttcactgtggcccctatggttttgcaagatcagctattcagtatagttgatttttcgccaagctggacatatgcaggctcgaagaccaaggttttagttactggtagattcttacatgctaatgaagtcacggagagatgcaagtggtcatgcatgtttggagaagttgaaattcaagcggagatttcagcagatgggactctccgatgttattctcccccgcataaaccaggcagagtccctttctatgtcacctgttccaacaggttagcctgtagtgaagtacgtgagtttgaatttcgaccaagtgactctcaatacatggatgctcctagcccgcttggtgcaaccaacaaagtttatttccagatacgtcttgacaacctattgtccctggggccagatgtgtaccaagctactataactaaccccagtaaggagatgatcgacttgagcaagaagattagttcactgttggcaaacaatgatgagtggtccaagttacttaaattggctgatgataacgagcctcttagccatgatcagcaggatcagtatgctgaaaacttaattaaggaaaaattgcatgtctggcttctccataaagtaggcaatggtggcaaaggacccagtgtgttagatgatgaggggctgggtgttcttcatcttgcagctgcccttggttatgattgggccataaggccaactgttactgctggtgtgaacataaatttcagagattttcatggatggactgcattacattgggctgcattttgtggcagagaacggactgtagtagcacttattgcactgggagcagctcctggagctttgacagatccacatcctaattaccctgctgaaagcacaccagcagaccttgcatctgctaacggacataagggcatctctggtttcctggcagaatcctctctgacaagtcatcttcaagccctcaatctgaaggaagccaatatgtctgaaatatctggtctacctggtattggagatataactgagagaaatgcatctcagcctgcaattggagattccttaggtgctgttcgaaatgccgctcaagctgctgctcgaatatatcaagttttcagggtgcaatccttccagaggaaacaagcggtccaatatgagggtgacaaaggtggcatatcggacgaacacacactttcactcctgtctatgaagccatccaagtcaggccagcttgatcccctgcatgctgcagcatctcgtatacaaaataaatataggggatggaaggggagaaaggaatttcttctcttcagacaacgaattgtgaagatccaggctcatgtgcgaggccaccaggtgaggaagcattatcggaaaatagtttggtctgttgggatagtggagaaagttatattgcgctggaggcgaagaagggctgggttacgtggttttaggccTAcagaaggtgcaatagagagcagcagtggtggcacaagtagcaatttggtcacagataaacctgctggagaTgattatgatttcttgcaagaaggacggaagcaaactgaagaaaggctgcagaaagctcttgccagagtgaagtccatggttcaatacccagaagcaagggatcagtaccaaaggattttgaatgttgtttcgaaaatgcaagagtctcagaccgtgcaagaaaagattttagacgaatcaaccgagatggatgaaggtgatttcatgagtgaattcaaggagctgtgggatgatgatacaccactccctggttatttctag
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| Protein seq | MAADARRFAVVPQLDIAQILKEAQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENFQRRTYWMLEEDFMHIVLVHYLETKGGKSRTRGNNDMHQAAVMDSPLSQLPSQTIDGESSLSGQFSEYEEAESGGTGYHSFTQMQQQQNGIGPVTDASMFSSRVSASSIGNYQGQHAMGHTTNFYSSSQHDSPLVLSDPNLELENNGHESLWNGVMKTDEGTVQMTHLQPPVHPEQGMFTTEGQGVEYLTFDEVYSDGLSLKDIGAAGADVEPFWQLSSATADISATENSVQQNDGSLGAAIGFPFLKTQSSNLSDILKDSFKKSDSFTRWMSKELLDVEDSQIQSSSGAYWNTEEADSIIEASSREPLDQFTVAPMVLQDQLFSIVDFSPSWTYAGSKTKVLVTGRFLHANEVTERCKWSCMFGEVEIQAEISADGTLRCYSPPHKPGRVPFYVTCSNRLACSEVREFEFRPSDSQYMDAPSPLGATNKVYFQIRLDNLLSLGPDVYQATITNPSKEMIDLSKKISSLLANNDEWSKLLKLADDNEPLSHDQQDQYAENLIKEKLHVWLLHKVGNGGKGPSVLDDEGLGVLHLAAALGYDWAIRPTVTAGVNINFRDFHGWTALHWAAFCGRERTVVALIALGAAPGALTDPHPNYPAESTPADLASANGHKGISGFLAESSLTSHLQALNLKEANMSEISGLPGIGDITERNASQPAIGDSLGAVRNAAQAAARIYQVFRVQSFQRKQAVQYEGDKGGISDEHTLSLLSMKPSKSGQLDPLHAAASRIQNKYRGWKGRKEFLLFRQRIVKIQAHVRGHQVRKHYRKIVWSVGIVEKVILRWRRRRAGLRGFRPTEGAIESSSGGTSSNLVTDKPAGDDYDFLQEGRKQTEERLQKALARVKSMVQYPEARDQYQRILNVVSKMQESQTVQEKILDESTEMDEGDFMSEFKELWDDDTPLPGYF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0008570 | OsLima_10g0008570.02 | Chr10 | 13611285 | 13618608 | + | NAM | ||
| CDS seq | atggcggcggacgcgcggcgcttcgcggtcgtgccgcagctagatattgcgcagatactgaaggaggctcaacaacgatggttgcgtcctgctgaaatttgcgaaatacttaaaaactacaaaagtttccgtattgcaccagaaccaccaaacaggcctcaaagtggctcgcttttcctatttgatcggaaagtattgagatacttcaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaagcacatgaaaggctgaaatctggaagtattgatgtgcttcactgctactatgcacatggagaagagaatgagaacttccaaaggaggacttactggatgttggaagaggattttatgcacattgttcttgtacattatcttgagaccaagggtgggaaatctcgtactaggggcaacaatgacatgcatcaagcagctgttatggatagtccattaagtcaattaccttcacaaactatagatggtgaaagctcacttagtggacagttctctgaatatgaagaggcagaatcaggaggaaccggataccactctttcactcagatgcagcagcagcaaaatggaattggacctgtgactgatgcttctatgttcagttctcgtgtttctgcttcatccataggtaattatcagggacaacatgctatgggacatacaacaaacttctattctagtagtcaacatgattcacctcttgttctcagtgatccaaaccttgaacttgaaaataatggacatgagtcattgtggaatggggttatgaaaactgatgaagggactgttcaaatgactcatctacaacctcctgttcatcctgagcaaggcatgttcaccacagaaggccaaggggttgaatatttgacattcgatgaagtatattctgatggactcagtctgaaggatataggtgctgcaggtgctgatgtagaaccattctggcagttttcttcaaacagctatctaacggaagccattgcatttcagctctctagtgctactgctgatatatctgcaacagagaacagcgtccaacaaaatgatggatctctaggggcagctattggcttcccatttttgaaaactcagtcatccaatctgtctgacatcctgaaagacagctttaagaaatctgacagttttacaagatggatgagcaaagagcttcttgatgttgaggattcgcaaattcagtctagctcaggggcatactggaacactgaagaggcagatagtatcatcgaagcatcaagccgtgagccactggatcagttcactgtggcccctatggttttgcaagatcagctattcagtatagttgatttttcgccaagctggacatatgcaggctcgaagaccaaggttttagttactggtagattcttacatgctaatgaagtcacggagagatgcaagtggtcatgcatgtttggagaagttgaaattcaagcggagatttcagcagatgggactctccgatgttattctcccccgcataaaccaggcagagtccctttctatgtcacctgttccaacaggttagcctgtagtgaagtacgtgagtttgaatttcgaccaagtgactctcaatacatggatgctcctagcccgcttggtgcaaccaacaaagtttatttccagatacgtcttgacaacctattgtccctggggccagatgtgtaccaagctactataactaaccccagtaaggagatgatcgacttgagcaagaagattagttcactgttggcaaacaatgatgagtggtccaagttacttaaattggctgatgataacgagcctcttagccatgatcagcaggatcagtatgctgaaaacttaattaaggaaaaattgcatgtctggcttctccataaagtaggcaatggtggcaaaggacccagtgtgttagatgatgaggggctgggtgttcttcatcttgcagctgcccttggttatgattgggccataaggccaactgttactgctggtgtgaacataaatttcagagattttcatggatggactgcattacattgggctgcattttgtggcagagaacggactgtagtagcacttattgcactgggagcagctcctggagctttgacagatccacatcctaattaccctgctgaaagcacaccagcagaccttgcatctgctaacggacataagggcatctctggtttcctggcagaatcctctctgacaagtcatcttcaagccctcaatctgaaggaagccaatatgtctgaaatatctggtctacctggtattggagatataactgagagaaatgcatctcagcctgcaattggagattccttaggtgctgttcgaaatgccgctcaagctgctgctcgaatatatcaagttttcagggtgcaatccttccagaggaaacaagcggtccaatatgagggtgacaaaggtggcatatcggacgaacacacactttcactcctgtctatgaagccatccaagtcaggccagcttgatcccctgcatgctgcagcatctcgtatacaaaataaatataggggatggaaggggagaaaggaatttcttctcttcagacaacgaattgtgaagatccaggctcatgtgcgaggccaccaggtgaggaagcattatcggaaaatagtttggtctgttgggatagtggagaaagttatattgcgctggaggcgaagaagggctgggttacgtggttttaggccTAcagaaggtgcaatagagagcagcagtggtggcacaagtagcaatttggtcacagataaacctgctggagaTgattatgatttcttgcaagaaggacggaagcaaactgaagaaaggctgcagaaagctcttgccagagtgaagtccatggttcaatacccagaagcaagggatcagtaccaaaggattttgaatgttgtttcgaaaatgcaagagtctcagaccgtgcaagaaaagattttagacgaatcaaccgagatggatgaaggtgatttcatgagtgaattcaaggagctgtgggatgatgatacaccactccctggttatttctag
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| Protein seq | MAADARRFAVVPQLDIAQILKEAQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENFQRRTYWMLEEDFMHIVLVHYLETKGGKSRTRGNNDMHQAAVMDSPLSQLPSQTIDGESSLSGQFSEYEEAESGGTGYHSFTQMQQQQNGIGPVTDASMFSSRVSASSIGNYQGQHAMGHTTNFYSSSQHDSPLVLSDPNLELENNGHESLWNGVMKTDEGTVQMTHLQPPVHPEQGMFTTEGQGVEYLTFDEVYSDGLSLKDIGAAGADVEPFWQFSSNSYLTEAIAFQLSSATADISATENSVQQNDGSLGAAIGFPFLKTQSSNLSDILKDSFKKSDSFTRWMSKELLDVEDSQIQSSSGAYWNTEEADSIIEASSREPLDQFTVAPMVLQDQLFSIVDFSPSWTYAGSKTKVLVTGRFLHANEVTERCKWSCMFGEVEIQAEISADGTLRCYSPPHKPGRVPFYVTCSNRLACSEVREFEFRPSDSQYMDAPSPLGATNKVYFQIRLDNLLSLGPDVYQATITNPSKEMIDLSKKISSLLANNDEWSKLLKLADDNEPLSHDQQDQYAENLIKEKLHVWLLHKVGNGGKGPSVLDDEGLGVLHLAAALGYDWAIRPTVTAGVNINFRDFHGWTALHWAAFCGRERTVVALIALGAAPGALTDPHPNYPAESTPADLASANGHKGISGFLAESSLTSHLQALNLKEANMSEISGLPGIGDITERNASQPAIGDSLGAVRNAAQAAARIYQVFRVQSFQRKQAVQYEGDKGGISDEHTLSLLSMKPSKSGQLDPLHAAASRIQNKYRGWKGRKEFLLFRQRIVKIQAHVRGHQVRKHYRKIVWSVGIVEKVILRWRRRRAGLRGFRPTEGAIESSSGGTSSNLVTDKPAGDDYDFLQEGRKQTEERLQKALARVKSMVQYPEARDQYQRILNVVSKMQESQTVQEKILDESTEMDEGDFMSEFKELWDDDTPLPGYF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr10 | 13615441 | 13615652 | + | OsLima_10g0008570.02 | OsLima_10g0008570.02,OsLima_10g0008570.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.345563 | 0.443767 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0375600 | RBH | 9.255322 | 6.661872 | 11.800377 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g22950 | RBH | 6.213465 | 4.473807 | 3.068402 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0375600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008720 | RBH | 2.612477 | 23.986843 | 13.731549 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008770 | RBH | 1.054486 | 7.388581 | 6.824018 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008650 | RBH | 5.282840 | 19.727997 | 21.687065 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009000 | RBH | 0.532810 | 0.784509 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008800 | RBH | 18.169641 | 37.021706 | 42.522812 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0206700 | RBH | 20.797146 | 42.4788685 | 46.990526 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008760 | RBH | 1.345101 | 1.802885 | 3.079718 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0220200 | RBH | 25.5359185 | 64.202618 | 34.4855345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006570 | RBH | 0.438540 | 0.445853 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008560 | RBH | 1.757602 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008960 | RBH | 15.599354 | 36.265965 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008540 | RBH | 3.293285 | 0.0 | 2.568125 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009090 | RBH | 1.635553 | 11.531667 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008820 | RBH | 1.824109 | 9.251898 | 6.995715 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008810 | RBH | 5.314198 | 34.076817 | 13.921034 |
