Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0008320 | OGI:10039430 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:13369739-13370382 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACAGCACCTTACCAAGAATCGCCGCCGCCATTGCTGCTTCCGTTGCCGAGCAAGCTGCTATTCCAGAACCCTGGGGTCTCATGGCCACCGATGACGCCGCCTCCGCCACCTTGGTTCTTGCCGTGGTCGTACTGATGATCGCCGCTGCTGTTTTCGTCGCTAGCCGTGGCGCTCGCTACCAGCTTCAGGTCCTCGAACGGGAACAACAACCTGCCCCACCGCGCTCTCTTGCAACCCAGCGCTGCACGCGCCAAACACCCTGGAGCTGCCGCCTGCACCCGCCcgtgcgtgtcctgggagaagccgagcgcagtctgagcttgttgctgatgctactgtggcggtggcggcatgcggaactcgccaagatgaaaccccacaactgcatattccaccggcatccctagcggccaatctgaggcagaggaacgtagtagccgatgctcctcagcaactccatcgccgagaacacgcGcccacgctgcccctgccaccggcgccgttcgccgccgccaggttgcctccggggttgcacatggtgctgctcttcaagctcaggaatgccgtgaactccggtgactgcagggcatggccgtggtgatgagggaacgccaggttgaggtcctgcgcgccctcatgcat
More
|
||||||||||
| CDS seq | atgcatgagggcgcgcaggacctcaacctggcgttccctcatcaccacggccatgccctgcagtcaccggagttcacggcattcctgagcttgaagagcagcaccatgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgacacgcacgGGCGGGTGCAGGCGGCAGCTCCAGGGTGTTTGGCGCGTGCAGCGCTGGGTTGCAAGAGAGCGCGGTGGGGCAGGTTGTTGTTCCCGTTCGAGGACCTGAAGCTGGTAGCGAGCGCCACGGCTAGCGACGAAAACAGCAGCGGCGATCATCAGTACGACCACGGCAAGAACCAAGGTGGCGGAGGCGGCGTCATCGGTGGCCATGAGACCCCAGGGTTCTGGAATAGCAGCTTGCTCGGCAACGGAAGCAGCAATGGCGGCGGCGATTCTTGGTAA
More
|
||||||||||
| Protein seq | MHEGAQDLNLAFPHHHGHALQSPEFTAFLSLKSSTMCNPGGNLAAANGAGGRGSDTHGRVQAAAPGCLARAALGCKRARWGRLLFPFEDLKLVASATASDENSSGDHQYDHGKNQGGGGGVIGGHETPGFWNSSLLGNGSSNGGGDSW |
||||||||||
| Function | Dof zinc finger protein 2 [UniProtKB/Swiss-Prot:B9F1L8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0008320 | OsLima_10g0008320.01 | Chr10 | 13369739 | 13370382 | - | NAM | ||
| CDS seq | atgcatgagggcgcgcaggacctcaacctggcgttccctcatcaccacggccatgccctgcagtcaccggagttcacggcattcctgagcttgaagagcagcaccatgtgcaaccccggaggcaacctggcggcggcgaacggcgccggtggcaggggcagcgacacgcacgGGCGGGTGCAGGCGGCAGCTCCAGGGTGTTTGGCGCGTGCAGCGCTGGGTTGCAAGAGAGCGCGGTGGGGCAGGTTGTTGTTCCCGTTCGAGGACCTGAAGCTGGTAGCGAGCGCCACGGCTAGCGACGAAAACAGCAGCGGCGATCATCAGTACGACCACGGCAAGAACCAAGGTGGCGGAGGCGGCGTCATCGGTGGCCATGAGACCCCAGGGTTCTGGAATAGCAGCTTGCTCGGCAACGGAAGCAGCAATGGCGGCGGCGATTCTTGGTAA
More
|
|||||||
| Protein seq | MHEGAQDLNLAFPHHHGHALQSPEFTAFLSLKSSTMCNPGGNLAAANGAGGRGSDTHGRVQAAAPGCLARAALGCKRARWGRLLFPFEDLKLVASATASDENSSGDHQYDHGKNQGGGGGVIGGHETPGFWNSSLLGNGSSNGGGDSW |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g22610 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008490 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008420 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0202200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008520 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0216600 | RBH | 0 | 0 | 0.246972 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008300 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008840 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008570 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008560 | RBH | 0.0 | 0.0 | 0.0 |
