Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0008100 | OGI:10038890 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:13180558-13185281 | ||||||||
| Gene Symbol | OsHDMA704, HDMA704, OsPAO11, PAO11 | ||||||||||
| DNA seq | ttatttatactttccctggacaatgtatttacatatcttcttctgcgcacatttgatcaagatgtctgcagagtcaatacctagaaaaaaaacaatagcattcacgtgaaaaagtgctgcagataaaatttaaaaagtctaaaaaatctagagcaagaaataacttataaatcacctgcaagatatgctccatgaacatagccattatagtgttcgcttgtgtgctcaccggtgaaataaacccttccaacaggagccttcaaaattacaatgatacaaaaccaacatttgtatttcagaaaatggaataattgagtacttctactaaacaagaaactttgccaatgcccgtgtctgtgtgtccaagaagatttatatgtgtcatcagtaaaaataataaatttgacatgagaatttgtttcgatgcatgtctagtggagtaaaaatttctgagctgagtttgaacagctatatatacccgaatttggtcgtattcgtagcgattaacgccaatgggccagttggagaaggtgcccttgaagaacctgttagaccaccaccttgggacaagaatgtccgtggcatccggcacttgctttcccgggaacatcttccttaggacctccactgcttcggccctagtctggttatcggactgttgctcgatcctccttgactcctcgtcggtgacagtgacgagcagcacgtttgatcctggatactgcttctcgaattgctgaaattcaagcaacacatgcatatatacgtatgcatcatatatcgatcagttacaatattattttacgtgattaatcagttgttcgatatactccctccctctagataattagtaatacttattgttttgaataatgacataaccttcaaagagcagtttttgaccactattttttactatagcatatatagaaatattagcaaatatatatgatttcatggaagtatattttttaagacttaattatctacacatatgcatggtctctatatttctaaaaaaacattatttaagaattaaattactaataatcaaatattttaaagtttgatataagcattgactaacaacctgtagaaagtagcaagttggtgcctcatacatatcatttcactttttgagtacctgccacacagggtagtatcctctcctgccacttgcgtaaaggaagaactccgtgcctggtccttcaggccagaatctcttggggaacttcaggaagatcttggtataaaccgacatgtcgaattggtagatagagacgatcttccatgcctgagttattagcaaaatcataagtcccatgtttgtttggaaaacaacaggcgaaattaagattattaattatcggatcaagttggatctgtttagaataaaagtaaacaagaaaattaattagcagtcaaataattttgggacaaagctaattagcggagggtgagctgattgaggactaacgggtaattgtggcttgaaccgtatgagatccgtttgcaagactccaaggctgaccgacaacataacatagtcagccctgtagatctgcccatcctccgtcttcaccgtgacgcctctcggcaagtatgtgatatccctcactacctaataaaacatatattgaaaatttaatgaaattaaagcacgcacttgccagactacatatgcataacccttttcTtttttgttgggactagttccattaattaccttttgaaattaatatataaaatatatcaaagttgggttgcttaatttggagtaatctatattaaaaattaacgtacggatgctgatatatactccctccatccctaaatgtttaacgccgttgactttttaaaacatgtttgacCGTTcgtcttattgaaaaaatttaagtaattattaatttttttcctctcatttgattcattgttaaatatacttttatgtatacATATatatatatatatatatatatattaataccttgttgagcttaagccttggatccactatggcaccggatgatttgtcagtcctaaggtacttcccggcgacgtgatagacgacggactcgtaaccccgctggtcggcgacgaagtgcacctcatcgccgaagttgttgaatgtcggtagcggctttgtgttctgcaggctcgtcacgcgcggtggctccgcgaactcatagtcgtatttgcaataatctatcaccatgtccactgccgccgatggaccccaaggcatgctgttacgtacgtaccatgcaatataattaattaatgtttgttcggtaaatattaattagcgccaatataatatgcagcgagttaaaaagaaaacagaaaacttagacctagctagatgatgtattcgtaggtgtcatgattcgttatgtgtaccgtgtatataCTctctctctctcttccAaaataacttaaccttaagtatatagaacgataatgaatctataagtgctaaagcttttccagattcgatcggtgtcctatgtatagcatatatcacatgttatcTttttttttagcaagcattttgcttgtgaccgtgtgttgttgtgcatttgcgtacgtagtccgttaattaattgctgcgtggatgcatattaattactagtacattagagcaaggataataatacagccagctgcttatttaattatagcctatctatcagctcactcatatagtggttaactcttcactataaaTatatggtccacatgtctatctcacagatttttttttggttcctgtgtctaagccggctgtaaacttacagcctgcttctcatctctctcctcttttctcccatccacctcagcattcagccttcttatagcccactattatacttgctcttatactccctccatactcgtaaaggaagtcgtttaggacagcgacacggtctccaaaacacaactttgatatcttatttttataaaaatatttattgaaaagtgatatatgtatacTtttatgaaagtatttttcaagacaaatctaTttatataaTttttatattttcaaactcaacaacttgagagttatttatgatttatatttctaagatttgacttaaacattgttttaaatgatttactttacgagtatggaggaagtatgtatggagatccatgcatttaatttaggcgctggcgtgtagtacatgttagttaatatacgTACtggtcattgagacgctgcatggccatgacggacatgtcctcgctgccgctggcgtgcagtgatgccgacagcttgccgccgctctcctccacctcgtccgccctatcaatgatcttctgcacaaacgcctcctcgtacagcccaccgctgcattttttttttgttttggcattgcattgtatgttaatgaacgaatacgtactcatcTtttttttttctgaaaactctttttaatcactaagtaaaaaaataattattgttttgaacagtacactgtcttcaaaaaataattttaaacattattttatactatatatataaatatcaatgtactagccgaatacctgtgctttgctacgaatataagaaaatatattataaaatttgaaataaataaaaaaaatgtttttcataaaatatattaattagccatactccttttgctatagggaatattaaactcaattgaattttttttaatatagctgtccatataaatttgattgttttttaatattaagacgtttaagaggcaacttacaacgttttagtgtgagtagttagggtagcagattcactgtcaccactattttttttaaaagtagtacagatatatcattttgttgaaatatactataaaattaatctatacatatggtctccatgtttctaaatcaaatattttagaagctatttgttggtaaaaaaatttaaaagtttgacatcagatttacatatcaaaacaataatcattttcaatatatatatatatatatatatatatatatatatatatatatatattccccgacggcagatatggcgcagtgatttaacccacttttgcttgtaggtgttgttggcgaggtggtcgtagtcggagttgaaagtcctgagctttagctcgtcgttgacaatggtccagatggggttcatccccttgccggtgacaccctccacccagtttgcccccatctccacgtcaacgccggcgaagtttgtcttgtggatgcgaccgccgatgcggtccgtcgcctccaggatcacgaagtcgctgatcccggcgtccgacagcctcttccccgccgagatccctgcATatatatatacatatacatatatacatgccgtgcaaaaaaaaataaagttgcatgatatatataccatcaagtttttaggttttcgaaatagtgtaatgaaaaaatgagtgcttcgaatcattgctatttgacttggacttattctgaaaaaatcgaggtattaatttgttcttttgaaaccgatgaccgatgatagagtatatagctgcggccggttcAaaaaaaaaagacactaggaaggtagtaatattgcattaacatatagagctagctatagtttggaagtgtagctttttaccggacatgccggCgccgacgatgataacccgagggccgccggcggcggcggcggcggcgagggacgaggcatactgtgctacgagaagcactagagctatggctacggagagcttcat
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| CDS seq | atgaagctctccgtagccatagctctagtgcttctcgtagcacagtatgcctcgtccctcgccgccgccgccgccgccggcggccctcgggttatcatcgtcggcGccggcatgtccgggatctcggcggggaagaggctgtcggacgccgggatcagcgacttcgtgatcctggaggcgacggaccgcatcggcggtcgcatccacaagacaaacttcgccggcgttgacgtggagatgggggcaaactgggtggagggtgtcaccggcaaggggatgaaccccatctggaccattgtcaacgacgagctaaagctcaggactttcaactccgactacgaccacctcgccaacaacacctacaagcaaaacggtgggctgtacgaggaggcgtttgtgcagaagatcattgatagggcggacgaggtggaggagagcggcggcaagctgtcggcatcactgcacgccagcggcagcgaggacatcatgccttggggtccatcggcggcagtggacatggtgatagattattgcaaatacgactatgagttcgcggagccaccgcgcgtgacgagcctgcagaacacaaagccgctaccgacattcaacaacttcggcgatgaggtgcacttcgtcgccgaccagcggggttacgagtccgtcgtctatcacgtcgccgggaagtaccttaggactgacaaatcatccggtgccatagtagtgagggatatcacatacttgccgagaggcgtcacggtgaagacggaggatgggcagatctacagggctgactatgttatgttgtcggtcagccttggagtcttgcaaacggatctcatacggttcaagccacaattacccgcatggaagatcgtctctatctaccaattcgacatgtcggtttataccaagatcttcctgaagttccccaagagattctggcctgaaggaccaggcacggagttcttcctttacgcaagtggcaggagaggatactaccctgtgtggcagcaattcgagaagcagtatccaggatcaaacgtgctgctcgtcactgtcaccgacgaggagtcaaggaggatcgagcaacagtccgataaccagactagggccgaagcagtggaggtcctaaggaagatgttcccgggaaagcaagtgccggatgccacggacattcttgtcccaaggtggtggtctaacaggttcttcaagggcaccttctccaactggcccattggcgttaatcgctacgaatacgaccaaattcgggctcctgttggaagggtttatttcaccggtgagcacacaagcgaacactataatggctatgttcatggagcatatcttgcaggtattgactctgcagacatcttgatcaaatgtgcgcagaagaagatatgtaaatacattgtccagggaaagtataaataa
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| Protein seq | MKLSVAIALVLLVAQYASSLAAAAAAGGPRVIIVGAGMSGISAGKRLSDAGISDFVILEATDRIGGRIHKTNFAGVDVEMGANWVEGVTGKGMNPIWTIVNDELKLRTFNSDYDHLANNTYKQNGGLYEEAFVQKIIDRADEVEESGGKLSASLHASGSEDIMPWGPSAAVDMVIDYCKYDYEFAEPPRVTSLQNTKPLPTFNNFGDEVHFVADQRGYESVVYHVAGKYLRTDKSSGAIVVRDITYLPRGVTVKTEDGQIYRADYVMLSVSLGVLQTDLIRFKPQLPAWKIVSIYQFDMSVYTKIFLKFPKRFWPEGPGTEFFLYASGRRGYYPVWQQFEKQYPGSNVLLVTVTDEESRRIEQQSDNQTRAEAVEVLRKMFPGKQVPDATDILVPRWWSNRFFKGTFSNWPIGVNRYEYDQIRAPVGRVYFTGEHTSEHYNGYVHGAYLAGIDSADILIKCAQKKICKYIVQGKYK |
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| Function | Polyamine oxidase 1 [UniProtKB/Swiss-Prot:O64411] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0008100 | OsLima_10g0008100.01 | Chr10 | 13180558 | 13185281 | - | NAM | ||
| CDS seq | atgaagctctccgtagccatagctctagtgcttctcgtagcacagtatgcctcgtccctcgccgccgccgccgccgccggcggccctcgggttatcatcgtcggcGccggcatgtccgggatctcggcggggaagaggctgtcggacgccgggatcagcgacttcgtgatcctggaggcgacggaccgcatcggcggtcgcatccacaagacaaacttcgccggcgttgacgtggagatgggggcaaactgggtggagggtgtcaccggcaaggggatgaaccccatctggaccattgtcaacgacgagctaaagctcaggactttcaactccgactacgaccacctcgccaacaacacctacaagcaaaacggtgggctgtacgaggaggcgtttgtgcagaagatcattgatagggcggacgaggtggaggagagcggcggcaagctgtcggcatcactgcacgccagcggcagcgaggacatcatgccttggggtccatcggcggcagtggacatggtgatagattattgcaaatacgactatgagttcgcggagccaccgcgcgtgacgagcctgcagaacacaaagccgctaccgacattcaacaacttcggcgatgaggtgcacttcgtcgccgaccagcggggttacgagtccgtcgtctatcacgtcgccgggaagtaccttaggactgacaaatcatccggtgccatagtagtgagggatatcacatacttgccgagaggcgtcacggtgaagacggaggatgggcagatctacagggctgactatgttatgttgtcggtcagccttggagtcttgcaaacggatctcatacggttcaagccacaattacccgcatggaagatcgtctctatctaccaattcgacatgtcggtttataccaagatcttcctgaagttccccaagagattctggcctgaaggaccaggcacggagttcttcctttacgcaagtggcaggagaggatactaccctgtgtggcagcaattcgagaagcagtatccaggatcaaacgtgctgctcgtcactgtcaccgacgaggagtcaaggaggatcgagcaacagtccgataaccagactagggccgaagcagtggaggtcctaaggaagatgttcccgggaaagcaagtgccggatgccacggacattcttgtcccaaggtggtggtctaacaggttcttcaagggcaccttctccaactggcccattggcgttaatcgctacgaatacgaccaaattcgggctcctgttggaagggtttatttcaccggtgagcacacaagcgaacactataatggctatgttcatggagcatatcttgcaggtattgactctgcagacatcttgatcaaatgtgcgcagaagaagatatgtaaatacattgtccagggaaagtataaataa
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| Protein seq | MKLSVAIALVLLVAQYASSLAAAAAAGGPRVIIVGAGMSGISAGKRLSDAGISDFVILEATDRIGGRIHKTNFAGVDVEMGANWVEGVTGKGMNPIWTIVNDELKLRTFNSDYDHLANNTYKQNGGLYEEAFVQKIIDRADEVEESGGKLSASLHASGSEDIMPWGPSAAVDMVIDYCKYDYEFAEPPRVTSLQNTKPLPTFNNFGDEVHFVADQRGYESVVYHVAGKYLRTDKSSGAIVVRDITYLPRGVTVKTEDGQIYRADYVMLSVSLGVLQTDLIRFKPQLPAWKIVSIYQFDMSVYTKIFLKFPKRFWPEGPGTEFFLYASGRRGYYPVWQQFEKQYPGSNVLLVTVTDEESRRIEQQSDNQTRAEAVEVLRKMFPGKQVPDATDILVPRWWSNRFFKGTFSNWPIGVNRYEYDQIRAPVGRVYFTGEHTSEHYNGYVHGAYLAGIDSADILIKCAQKKICKYIVQGKYK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0532100 | SBH | 1.888328 | 2.340761 | 4.969584 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g09810 | SBH | 0.036348 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0532100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008260 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008310 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008180 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008500 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008340 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0199700 | RBH | 0 | 0.0292995 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008320 | RBH | 0.0 | 0.484943 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0213500 | RBH | 0.0282515 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008530 | RBH | 0.0 | 8.484278 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0056140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008630 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008340 | RBH | 0.0 | 0.0 | 1.778755 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008340 | RBH | 0.0 | 0.0 | 0.0 |
