Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0007670 | OGI:10037580 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:12579601-12581652 | ||||||||
| Gene Symbol | OsMST | ||||||||||
| DNA seq | attaccattgctgtagcacaaatttttattttcttaattttttttactgtatttcaacgattttgttttttctaaacaccacacgacgccagaatgacattgttagctagtagtcgtttcctacaaatgcaacagtagtagtatcaggtcccttccatttcaatctctagccatctgtaccactagctagctagcgaatattcgttcttttccccaagtgacaaacacttccAcgtcatccacacgcgtgcgttgcactttgttcacgcacgcgcaccgcggtgcacttcgcactacgccatcggggcgccgccgccgccgccgccgccggaggccggcatctcgacggccgccgccgacgcccggcGccgcgcgcgccacccctggctgaacacctcctcgatctcctccagcggcttgccctgcgtctccgggcacaggaggtagaagaacgtggcggcggcgacggcgagcccggcgaagaggaagaaggcgccgccgatggtgatggccttgtagagcgacacgaacgtcatggacacgccggcgttcatcacgcggttgatggcgacgccgacgctggcgccctgcgcgcggaggcggagcgggtacacctccgagctgtaggcccaggtgatcggcccgacgccgatggagaaggaggcgacgaaggtgaacacggtggcgatggcgagcacgacggtccacgccggcgagtggtgcggcggcgaccgctcgatgacggtgaggcccatgccgaggcaggcgagcgaggcgatgatgccggcgaggcttgacaggtagagcggccgccggcctatgcggtcgacgaggaggatggcggtgaggatgaacgccgtcttggtgacgcccacgccgatggtcgcagcgagcaccgagttgcggctggcgatgccggccgccttgaagatgcgcgggctgtagagcaccacggcctcgatgccggtgaggtgctggaagaagtggatccccagggcggcgatgacgatgcgccgcaccggcggcgtcgggtgcaggaacagctccctccacacgcccttgccgccgctgcccgcgttggcggcggcggcggcgccgtcgtcgtcggcgagccccgccgcggccttgatctccgcgagccgcgcgtcggcctcgctgggcctgtcgcacacgcggcggagcacggagagcgcctcctcggcgcggccctggacgacgagccaccgcggggactcgggcatggcgagcacgccgagcgcgagcgcggcgctcGggagcgcgccgaggccgagcatggcgcgccacccgtacaccagcggcagcttggcgagcaggtagttggccacgtagccgatgagtatcccgaagctgatgcagatctccgggagcgaggtgagcgagccgcggatgtcggcggaggcgatctcggcggcgtacaccggcgcaatcatgagcgcgtagccgacgccgacgccggcgacgcagcggccggcgaggagcgtggcgaagttgggcgcgaggcccatgaggacggagcccacgaggaagatgcaggcggcgagggagatggtgaggcggcggccgatgcagtcggagacgcggccggcggtgagggagccgacgagcgcgcacacgttgaggatcccggcgaggacctgcacctgcgtgtcgttcgtcttcaggtcctccttgatgaacagcatcgccccactcatcacaccagtgtctgcaatttaattatttttcatcatgccaattttccttttttttctttattttttcgcgcgcgattacatgaaagacgcgcacacacaccgcactcacgtgacacgtgaatcccgctaacacgtacatgctgaacgagacagagatcggcggtaaatcactgatctcactaaaatcaccgatatcgaaaatgttataataacatgtcaattaggtgttctaatgtagtttaccatagcccatgaggaccgagatgatggagccgatgatggagcacccgacggcgtacttgttcttcctctcgtcattctgcttctcttctcccat
More
|
||||||||||
| CDS seq | atgggagaagagaagcagaatgacgagaggaagaacaagtacgccgtcgggtgctccatcatcggctccatcatctcggaggacctgaagacgaacgacacgcaggtgcaggtcctcgccgggatcctcaacgtgtgcgcgctcgtcggctccctcaccgccggccgcgtctccgactgcatcggccgccgcctcaccatctccctcgccgcctgcatcttcctcgtgggctccgtcctcatgggcctcgcgcccaacttcgccacgctcctcgccggccgctgcgtcgccggcgtcggcgtcggctacgcgctcatgattgcgccggtgtacgccgccgagatcgcctccgccgacatccgcggctcgctcacctcgctcccggagatctgcatcagcttcgggatactcatcggctacgtggccaactacctgctcgccaagctgccgctggtgtacgggtggcgcgccatgctcggcctcggcgcgctccCgagcgccgcgctcgcgctcggcgtgctcgccatgcccgagtccccgcggtggctcgtcgtccagggccgcgccgaggaggcgctctccgtgctccgccgcgtgtgcgacaggcccagcgaggccgacgcgcggctcgcggagatcaaggccgcggcggggctcgccgacgacgacggcgccgccgccgccgccaacgcgggcagcggcggcaagggcgtgtggagggagctgttcctgcacccgacgccgccggtgcggcgcatcgtcatcgccgccctggggatccacttcttccagcacctcaccggcatcgaggccgtggtgctctacagcccgcgcatcttcaaggcggccggcatcgccagccgcaactcggtgctcgctgcgaccatcggcgtgggcgtcaccaagacggcgttcatcctcaccgccatcctcctcgtcgaccgcataggccggcggccgctctacctgtcaagcctcgccggcatcatcgcctcgctcgcctgcctcggcatgggcctcaccgtcatcgagcggtcgccgccgcaccactcgccggcgtggaccgtcgtgctcgccatcgccaccgtgttcaccttcgtcgcctccttctccatcggcgtcgggccgatcacctgggcctacagctcggaggtgtacccgctccgcctccgcgcgcagggcgccagcgtcggcgtcgccatcaaccgcgtgatgaacgccggcgtgtccatgacgttcgtgtcgctctacaaggccatcaccatcggcggcgccttcttcctcttcgccgggctcgccgtcgccgccgccacgttcttctacctcctgtgcccggagacgcagggcaagccgctggaggagatcgaggaggtgttcagccaggggtggcgcgcgcggCgccgggcgtcggcggcggccgtcgagatgccggcctccggcggcggcggcggcggcggcgccccgatggcgtag
More
|
||||||||||
| Protein seq | MGEEKQNDERKNKYAVGCSIIGSIISEDLKTNDTQVQVLAGILNVCALVGSLTAGRVSDCIGRRLTISLAACIFLVGSVLMGLAPNFATLLAGRCVAGVGVGYALMIAPVYAAEIASADIRGSLTSLPEICISFGILIGYVANYLLAKLPLVYGWRAMLGLGALPSAALALGVLAMPESPRWLVVQGRAEEALSVLRRVCDRPSEADARLAEIKAAAGLADDDGAAAAANAGSGGKGVWRELFLHPTPPVRRIVIAALGIHFFQHLTGIEAVVLYSPRIFKAAGIASRNSVLAATIGVGVTKTAFILTAILLVDRIGRRPLYLSSLAGIIASLACLGMGLTVIERSPPHHSPAWTVVLAIATVFTFVASFSIGVGPITWAYSSEVYPLRLRAQGASVGVAINRVMNAGVSMTFVSLYKAITIGGAFFLFAGLAVAAATFFYLLCPETQGKPLEEIEEVFSQGWRARRRASAAAVEMPASGGGGGGGAPMA |
||||||||||
| Function | Probable polyol transporter 6 [UniProtKB/Swiss-Prot:Q8GXR2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0007670 | OsLima_10g0007670.01 | Chr10 | 12579601 | 12581652 | - | NAM | ||
| CDS seq | atgggagaagagaagcagaatgacgagaggaagaacaagtacgccgtcgggtgctccatcatcggctccatcatctcggaggacctgaagacgaacgacacgcaggtgcaggtcctcgccgggatcctcaacgtgtgcgcgctcgtcggctccctcaccgccggccgcgtctccgactgcatcggccgccgcctcaccatctccctcgccgcctgcatcttcctcgtgggctccgtcctcatgggcctcgcgcccaacttcgccacgctcctcgccggccgctgcgtcgccggcgtcggcgtcggctacgcgctcatgattgcgccggtgtacgccgccgagatcgcctccgccgacatccgcggctcgctcacctcgctcccggagatctgcatcagcttcgggatactcatcggctacgtggccaactacctgctcgccaagctgccgctggtgtacgggtggcgcgccatgctcggcctcggcgcgctccCgagcgccgcgctcgcgctcggcgtgctcgccatgcccgagtccccgcggtggctcgtcgtccagggccgcgccgaggaggcgctctccgtgctccgccgcgtgtgcgacaggcccagcgaggccgacgcgcggctcgcggagatcaaggccgcggcggggctcgccgacgacgacggcgccgccgccgccgccaacgcgggcagcggcggcaagggcgtgtggagggagctgttcctgcacccgacgccgccggtgcggcgcatcgtcatcgccgccctggggatccacttcttccagcacctcaccggcatcgaggccgtggtgctctacagcccgcgcatcttcaaggcggccggcatcgccagccgcaactcggtgctcgctgcgaccatcggcgtgggcgtcaccaagacggcgttcatcctcaccgccatcctcctcgtcgaccgcataggccggcggccgctctacctgtcaagcctcgccggcatcatcgcctcgctcgcctgcctcggcatgggcctcaccgtcatcgagcggtcgccgccgcaccactcgccggcgtggaccgtcgtgctcgccatcgccaccgtgttcaccttcgtcgcctccttctccatcggcgtcgggccgatcacctgggcctacagctcggaggtgtacccgctccgcctccgcgcgcagggcgccagcgtcggcgtcgccatcaaccgcgtgatgaacgccggcgtgtccatgacgttcgtgtcgctctacaaggccatcaccatcggcggcgccttcttcctcttcgccgggctcgccgtcgccgccgccacgttcttctacctcctgtgcccggagacgcagggcaagccgctggaggagatcgaggaggtgttcagccaggggtggcgcgcgcggCgccgggcgtcggcggcggccgtcgagatgccggcctccggcggcggcggcggcggcggcgccccgatggcgtag
More
|
|||||||
| Protein seq | MGEEKQNDERKNKYAVGCSIIGSIISEDLKTNDTQVQVLAGILNVCALVGSLTAGRVSDCIGRRLTISLAACIFLVGSVLMGLAPNFATLLAGRCVAGVGVGYALMIAPVYAAEIASADIRGSLTSLPEICISFGILIGYVANYLLAKLPLVYGWRAMLGLGALPSAALALGVLAMPESPRWLVVQGRAEEALSVLRRVCDRPSEADARLAEIKAAAGLADDDGAAAAANAGSGGKGVWRELFLHPTPPVRRIVIAALGIHFFQHLTGIEAVVLYSPRIFKAAGIASRNSVLAATIGVGVTKTAFILTAILLVDRIGRRPLYLSSLAGIIASLACLGMGLTVIERSPPHHSPAWTVVLAIATVFTFVASFSIGVGPITWAYSSEVYPLRLRAQGASVGVAINRVMNAGVSMTFVSLYKAITIGGAFFLFAGLAVAAATFFYLLCPETQGKPLEEIEEVFSQGWRARRRASAAAVEMPASGGGGGGGAPMA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0360100 | RBH | 0.061649 | 0.000000 | 0.297770 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21590 | RBH | 0.122939 | 0.000000 | 0.082615 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0360100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0007890 | RBH | 0.0 | 5.215240 | 1.163370 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0007930 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007840 | RBH | 0.0 | 0.000000 | 0.327195 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008110 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0007980 | RBH | 0.0 | 0.0 | 2.853496 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0192200 | RBH | 0.2935755 | 3.020227 | 0.220565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0007940 | RBH | 0.0 | 0.173201 | 0.179561 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0205600 | RBH | 1.100784 | 16.255045 | 0.1582605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007030 | RBH | 0.867484 | 0.090687 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0007740 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008150 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0007630 | RBH | 0.0 | 0.0 | 0.130357 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008240 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G007960 | RBH | 0.057478 | 0.416835 | 0.142435 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0007980 | RBH | 0.0 | 1.730821 | 0.397627 |
