Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0007550 | OGI:10037200 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:12450874-12453569 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttcaatttaaatgttaccatccttggggcagcagttctaccaagtacagagtaaagattaaccaaatcatttatagttccatgtttaggtatatattaaataaaattaaaaataccaacagacctgtgtgtcaatatcatcatgttcaggcagcaataggtgctggaaggattcagctaatgaaagatgaagattttggaccatcttctaaccatgaaaatcacaaaacagatggttacataagctatcttcaGgggaatgctcattgcgatactgaagatgccattgcatctccattctctctcttcggtaatgttcagattcctgtttccgcccagccatttgtaatccatgtatcagtacttcatatgtacctgggcatgcagatactccattagcactcatttgcgagaatagttggagagccttatcaactttcccatcttgaaaataggcactcataagggcagtgtacgtaacaacattcttgtctgtagtcaataatccaaaaatgcgcactgcggttgaagaatgcccagcacaagccagttttattattaaaatagatgatagatatgtcccaagattgcagccagattttatcaATatttcaacgatctcaaacaccaaatcgaatgaaccatttctgatgtaatgaccaagaaggctgccatatgcagatctatcaagttcattgcctattcttagactgtaacacagaactgcaagcccacatgatggtctgcagtttgcacagcttgcttgaataatgtcagagaggatatgtgattcaaccttgatattcttgggggtcatttcatttatcatgtgttctaCGGcggaccagtttctagaagccaaaaggtacaggatcgtactcctgacagtaatgtagcctagatcagtaaatgctgggtcacattcgatgccttcaaatgcaagatgcggattcacttcccgaagaagattgtcactctcaccattagcttttagagcttcaagtgcttccaaaaatataggtcggcgaagcacgatgaaattttccttcatgtattgaagaattcgggtcatcactgatgtctcaccagccctggagcatttctgaactagaatattacagagtgctttatctggttctacaccagcttcttgcatcttgtccataatttccatagtagcttcaaatttccctgaagtaaattagatttgttttaggatatgatggtacaaatattatatgcagtgcaaattagaagtgaaaacattaatcaaatatgtgatgtatcataactgccaagccaatttatcctgcctaggcagccaccttgcttgcccaactagcacctcttacatcggccagtactcgtgttaagttgcagcagctgtagagtggagttcatacataggtgacaaggattttgagattgtttactgcacttcagtaagctaagaaacttttgcagcctagactggatttgcctacctatgtacagagtattccagaatgctaacaattgttcaatcTtttcttcacaggaagttgagcacaaatgactcaatgaatgaagaacttcagatagatattgagtacatctaaaaagagatagatattgggtatgcttacaagacagtttgttataaaagggatattctgaaggccaatgaatgaaatagattaatcttactagccaatagatgctgaactttaattgtgcttaatttaagcactaacatgtctacacaagctgagattcccactgtactctaatggatggcatattctaattgcatgccatttagcaatccgttgaagaaattagagtgcaaaaactaagcaaccgaccaacaccaagctatgttcatcgagcaaaccaaccattggatcttccataccattcaggcatttcatcgaacaacagatcaacagctcacaacgagagtgcagtacagaacgtagaggtaacaaacaacatggtaggcatttggtcgaacagctcacctacgttcgcgagatgctcgatgagcaccgtgtacgtcttgcagctgggccgcagcccttcggccaccatctcctggaacacctccctggcctccgcaggcctcccggcgtcgaacaggatcttcacgcacgccgtgtagctcacgagggtgggccgacacttccccttccgcgcgcgcatctcctcccacacccgcatcgcggcgtcgacgtccccggcgtgcgccagccagtgcatgaccgtggtgaaggtggcggcgtcggggtccacccccgcgcggagcatctcggcgaggaggcgcatcatggccggcacgcggccggcctcgccgaggaggtGGAgcatggaggtgtaggtgaagcggtcgtggcggaacccgccgcctgcgccggcggcgaggcggaagaagaggaaggccttgtggagaggcgggtgcgccttgaggacgcgcgcgacggtgtgggagtcccaggcgaggcccgggagggacaggaggagcggccgcgccgccgaccaggggtggccgcggaggatggcgtcgacgcggcggacgacgtcgcgggtgtaggtcggggtgggcggctcggcggcgggggcctcgcggcgaggtctcggccggcggcggggtctgggtgggaggaagtggcggctgcggcggagcattttgtgccgcggcgatgaaccgctcgctatgga
More
|
||||||||||
| CDS seq | atgctccgccgcagccgccacttcctcccacccagaccccgccgccggccgagacctcgccgcgaggcccccgccgccgagccgcccaccccgacctacacccgcgacgtcgtccgccgcgtcgacgccatcctccgcggccacccctggtcggcggcgcggccgctcctcctgtccctcccgggcctcgcctgggactcccacaccgtcgcgcgcgtcctcaaggcgcacccgcctctccacaaggccttcctcttcttccgcctcgccgccggcgcaggcggcgggttccgccacgaccgcttcacctacacctccatgcTCCacctcctcggcgaggccggccgcgtgccggccatgatgcgcctcctcgccgagatgctccgcgcgggggtggaccccgacgccgccaccttcaccacggtcatgcactggctggcgcacgccggggacgtcgacgccgcgatgcgggtgtgggaggagatgcgcgcgcggaaggggaagtgtcggcccaccctcgtgagctacacggcgtgcgtgaagatcctgttcgacgccgggaggcctgcggaggccagggaggtgttccaggagatggtggccgaagggctgcggcccagctgcaagacgtacacggtgctcatcgagcatctcgcgaacgtagggaaatttgaagctactatggaaattatggacaagatgcaagaagctggtgtagaaccagataaagcactctgtaatattctagttcagaaatgctccagggctggtgagacatcagtgatgacccgaattcttcaatacatgaaggaaaatttcatcgtgcttcgccgacctatatttttggaagcacttgaagctctaaaagctaatggtgagagtgacaatcttcttcgggaagtgaatccgcatcttgcatttgaaggcatcgaatgtgacccagcatttactgatctaggctacattactgtcaggagtacgatcctgtaccttttggcttctagaaactggtccgCCGtagaacacatgataaatgaaatgacccccaagaatatcaaggttgaatcacatatcctctctgacattattcaagcaagctgtgcaaactgcagaccatcatgtgggcttgcagttctgtgttacagtctaagaataggcaatgaacttgatagatctgcatatggcagccttcttggtcattacatcagaaatggttcattcgatttggtgtttgagatcgttgaaatATtgataaaatctggctgcaatcttgggacatatctatcatctattttaataataaaactggcttgtgctgggcattcttcaaccgcagtgcgcatttttggattattgactacagacaagaatgttgttacgtacactgcccttatgagtgcctattttcaagatgggaaagttgataaggctctccaactattctcgcaaatgagtgctaatggagtatctgcatgcccaggtacatatgaagtactgatacatggattacaaatggctgggcggaaacaggaatctgaacattaccgaagagagagaatggagatgcaatggcatcttcagtatcgcaatgagcattcccCtgaagatagcttatgtaaccatctgttttgtgattttcatggttag
More
|
||||||||||
| Protein seq | MLRRSRHFLPPRPRRRPRPRREAPAAEPPTPTYTRDVVRRVDAILRGHPWSAARPLLLSLPGLAWDSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLHLLGEAGRVPAMMRLLAEMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKCRPTLVSYTACVKILFDAGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFEATMEIMDKMQEAGVEPDKALCNILVQKCSRAGETSVMTRILQYMKENFIVLRRPIFLEALEALKANGESDNLLREVNPHLAFEGIECDPAFTDLGYITVRSTILYLLASRNWSAVEHMINEMTPKNIKVESHILSDIIQASCANCRPSCGLAVLCYSLRIGNELDRSAYGSLLGHYIRNGSFDLVFEIVEILIKSGCNLGTYLSSILIIKLACAGHSSTAVRIFGLLTTDKNVVTYTALMSAYFQDGKVDKALQLFSQMSANGVSACPGTYEVLIHGLQMAGRKQESEHYRRERMEMQWHLQYRNEHSPEDSLCNHLFCDFHG |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At2g01390 [UniProtKB/Swiss-Prot:Q9ZU29] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0007550 | OsLima_10g0007550.01 | Chr10 | 12450874 | 12453569 | - | NAM | ||
| CDS seq | atgctccgccgcagccgccacttcctcccacccagaccccgccgccggccgagacctcgccgcgaggcccccgccgccgagccgcccaccccgacctacacccgcgacgtcgtccgccgcgtcgacgccatcctccgcggccacccctggtcggcggcgcggccgctcctcctgtccctcccgggcctcgcctgggactcccacaccgtcgcgcgcgtcctcaaggcgcacccgcctctccacaaggccttcctcttcttccgcctcgccgccggcgcaggcggcgggttccgccacgaccgcttcacctacacctccatgcTCCacctcctcggcgaggccggccgcgtgccggccatgatgcgcctcctcgccgagatgctccgcgcgggggtggaccccgacgccgccaccttcaccacggtcatgcactggctggcgcacgccggggacgtcgacgccgcgatgcgggtgtgggaggagatgcgcgcgcggaaggggaagtgtcggcccaccctcgtgagctacacggcgtgcgtgaagatcctgttcgacgccgggaggcctgcggaggccagggaggtgttccaggagatggtggccgaagggctgcggcccagctgcaagacgtacacggtgctcatcgagcatctcgcgaacgtagggaaatttgaagctactatggaaattatggacaagatgcaagaagctggtgtagaaccagataaagcactctgtaatattctagttcagaaatgctccagggctggtgagacatcagtgatgacccgaattcttcaatacatgaaggaaaatttcatcgtgcttcgccgacctatatttttggaagcacttgaagctctaaaagctaatggtgagagtgacaatcttcttcgggaagtgaatccgcatcttgcatttgaaggcatcgaatgtgacccagcatttactgatctaggctacattactgtcaggagtacgatcctgtaccttttggcttctagaaactggtccgCCGtagaacacatgataaatgaaatgacccccaagaatatcaaggttgaatcacatatcctctctgacattattcaagcaagctgtgcaaactgcagaccatcatgtgggcttgcagttctgtgttacagtctaagaataggcaatgaacttgatagatctgcatatggcagccttcttggtcattacatcagaaatggttcattcgatttggtgtttgagatcgttgaaatATtgataaaatctggctgcaatcttgggacatatctatcatctattttaataataaaactggcttgtgctgggcattcttcaaccgcagtgcgcatttttggattattgactacagacaagaatgttgttacgtacactgcccttatgagtgcctattttcaagatgggaaagttgataaggctctccaactattctcgcaaatgagtgctaatggagtatctgcatgcccaggtacatatgaagtactgatacatggattacaaatggctgggcggaaacaggaatctgaacattaccgaagagagagaatggagatgcaatggcatcttcagtatcgcaatgagcattcccCtgaagatagcttatgtaaccatctgttttgtgattttcatggttag
More
|
|||||||
| Protein seq | MLRRSRHFLPPRPRRRPRPRREAPAAEPPTPTYTRDVVRRVDAILRGHPWSAARPLLLSLPGLAWDSHTVARVLKAHPPLHKAFLFFRLAAGAGGGFRHDRFTYTSMLHLLGEAGRVPAMMRLLAEMLRAGVDPDAATFTTVMHWLAHAGDVDAAMRVWEEMRARKGKCRPTLVSYTACVKILFDAGRPAEAREVFQEMVAEGLRPSCKTYTVLIEHLANVGKFEATMEIMDKMQEAGVEPDKALCNILVQKCSRAGETSVMTRILQYMKENFIVLRRPIFLEALEALKANGESDNLLREVNPHLAFEGIECDPAFTDLGYITVRSTILYLLASRNWSAVEHMINEMTPKNIKVESHILSDIIQASCANCRPSCGLAVLCYSLRIGNELDRSAYGSLLGHYIRNGSFDLVFEIVEILIKSGCNLGTYLSSILIIKLACAGHSSTAVRIFGLLTTDKNVVTYTALMSAYFQDGKVDKALQLFSQMSANGVSACPGTYEVLIHGLQMAGRKQESEHYRRERMEMQWHLQYRNEHSPEDSLCNHLFCDFHG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.060354 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0358700 | RBH | 1.164667 | 0.257874 | 1.574370 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21470 | RBH | 0.777145 | 0.172388 | 0.200667 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0358700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0007790 | RBH | 0.575412 | 0.000000 | 0.447977 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0007830 | RBH | 0.0 | 2.587178 | 1.360242 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007790 | RBH | 0.247224 | 0.0 | 3.479409 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0007940 | RBH | 0.056462 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0007860 | RBH | 2.372518 | 0.818681 | 3.781035 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0200100 | SBH | 0.8965975 | 3.8758765 | 1.5284435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0007820 | RBH | 0.076602 | 0.042614 | 0.220064 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0203300 | RBH | 2.083781 | 3.9795765 | 6.718092 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007260 | SBH | 0.123501 | 0.036228 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0007600 | RBH | 0.308457 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008030 | RBH | 0.625361 | 2.480997 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0007510 | RBH | 0.054518 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008120 | RBH | 0.185615 | 0.548946 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G007760 | RBH | 0.125193 | 0.940346 | 0.472383 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0007800 | RBH | 0.504305 | 8.297886 | 3.460715 |
