Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0007030 | OGI:10034810 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:11588130-11593495 | ||||||||
| Gene Symbol | BGAL14, OsBgal14, OsBGal14, OsEnS-135, MEG2 | ||||||||||
| DNA seq | agacaaaataaaattttcaattgatcactgtgcaacttaatctgattttcctggtgacaatactgcttaatcaggttaataaattgtttctataacgtgaagatggacaaagcctttcattgcggattttataaagtttaattgattggatcgacagtgcggtatctcataaaatcaacataaaaagtaaaatgaaggaaaaaagtcttccacgatctgataccaataagaatgttaacctatagcttattatccTaaacaaaccaaccTattgagcaactatccaggacgtggtcaattcactgatttttctcagcaagtggcctggacagtgagcacaccagagacacaaccagcattggcaaacgcatcggtgacaagcaccgtgcacgactccttcccaacgcacgcggccgcaaatgcgtcataagccaccttcgagtcgcacccgccgtcgtaggatccgcaccggccacgtgccacaccgaagctagccacatcaacactcgaaatggtcctgccatgcgcgccacacgacagcgtgacagtgtcaccaagctcggcagacgcacacacggaaccctccaccacggtgcggaccgccacctccgacgggtcgccgccggcttcctcgaagaggatgagtgtgttgggctcccctttgtggaggaaggagcgtggcacatggtagagctgttgcgagggttctccgcaacccgtgaggcacttttgggcttcaacctctgccttgaacacgccacggtagtcgcagtggtggcagccgggcatgtctgctgcaacgtacgatggccagtagcgcccgaggctgtttccattcacccatgccacacccttgtttagcccatggaggtccaccaccacagagtcttcgccggcaggggcttggaacgtggtctacaaaaaATatatatatcaaaaacagagtattagctatacccaatagcatagtacacaccatattagtaaataatgtgcatattgattattaatagtaccttgtaccaggtgaagggcctgttgataggaatggtgctgttatggctgcgccatttgttgcctggcttgtcaagatagatcttcctgtactcaccagccaaaccagcctagaaaatcaaaattcaaagtgaccatcaataccagcacagctcgacaaataattagcaatggATaaaaatgttcttcaccttgtaagaccaggagttgttggagagatcaatcgcagaaccactgctgtcaataagtttaactgggcctccaacaattccagcaggaagcagctcaaatgagccaccatagttctgtttgacaagaatgaaacaaatatattttcatcacacacggttgcaaagaaagagatgagggtattgctcgaattgtctgatgagctgagtagtaagaaaagagaatattaacccttaggccaactgtcccgctcagaagagaaatatagttcttgccatcatgaagctttaccggtgacttgagttggaaggtaaaattctcattgggagaatattgttgacctgacgagcacaacattaattttagaaaaaaaacgttggtgcaatgaatagtttggaccattcaagaagaagattgcaactagaaatcatcttttttacatggaaccaaatttaactcattacttaccgacaagctttccattcacaaatgcgtagagttcatggccagttgtgttcacgtatagcacgtagctcccctctcccttgtgttcaaggctgaatttgatcgacgtttagaattcagcagcacacttgataaattacactaatgtactaaattttcaatacataaattttgatagaattattttttgggccagtaccttgttctataccataaataatcgctctggtcggttgtcgtcacgatctgctccaaaagctcattctttctaaagttgcccttttcatcggtcatgaagggcctcaagttctctggcatccatgaccatttgaagtgctctgtttgctgctccaccatgcttgtcttgtttaccatcacagtcgtctgcgtcttgatctaatggtaccaaggttagagcaggaaaaaaataggtcagaattgacaaataatttacaatagaaattcagttatattgtaggtcatgaggtctaaaatgatcaaattaatttattcaacggtaagaggaaaaaatacctttgcgctattaaaggcaacagtcttgcaatccggtaagatgctaacagaccaAGCaggcaagaagtgagtggttccatcaagagtaacattgacatccctatcatcaaaccggttgttgatgaaacaagcagaggtggcatttaaggtgtacttggtgacctgcaatgcccaaattatagtgtcgtggcatcagactaattgtgtgaatttcccaagaataaggtattctagcttggaattatcataaatatgataaatgcttttactttgggttaaagccattcatgcattaacattaaaacatattttaaacttgatgaaatttaacttcaacttccacaatatagagaatatgttgtgttacattactggccctgcaggcgcataggttcaagactcgtgatacgaagtttgataacatttcaagtacaaaagaatggcatgatatggatctcaccgtgacattatcaccgtaattggtgtcaatgtaatctccatggagaagaatcttctccatagacatgagcacagagtggagctccttcaagtggccatatttaggctgcctaagattacctagtgatcaaaaggcaggcgatttgaaagatcagaacaagatcgcaaaattagtgcagtgctcatcatatcatatatagataaaataaattgCtagatatatcttgtgtgaaatggacccaccatactcatccaagggagcatcataatcatagcttgttgtaatatatgggcctcctgcagtgcggccaaagttggtaccaccatggtactgcgataaaatggaaatggaaagtttaatttttattcatcagggaataagcaacaagaatctaaagggcagcataccatgtagtagttctgtagtgaaccacgcatctggaagaacatcgcaactgcaaaagcaatgtcttcagtaggcctacgaaattcgggctgatcccaatctctgtacctaatgacatatatattattacaaatttaagatacacattaatccataccacagcagaaaattattctgtaaattaaaaaaacacatgtattaatgatggaagaaaattttatattaccagccagtccagttctctgtccacattttagggatgcttgtcctgtttgaaaaccactcatggcaatagaatccattacaagtgttgacctaaatttgtcagaaaaatgatgacatgcatttcattcaaccaaccaatgcaataataaacttaaatatagaatattttgaattgcaatcgaattgaatctcttgcttaccacattcggtggcacatcattgtcttgctggcacatgatccatgggaccccaacattctgcttatttgccatgtccgcacaccagtggatgtattcgtgcgcagactggatattttccggttgcacatggtataaccatactcattctcaatctatatgtaaagatccaaacatgcattggtatttgcattagagagcacagttagggattcaaatggtaaaatcgggtcatattggccccaaaattctgaattgtagtacagtacctgagcaaggatgattgggcctccttgccccgcgaacatgtttgcatccttcatcttcttaactataagtgtagtgaaggcctccatttcattctgtttaatggaaacaccacaattgctcataattcttcttgatgtaaagatctatgaattattcactgtgaattaaatttgttcttgttgtccattacctcaaaaggcttgttatgcagcctaaactttattccagggatatcacgcaaccaaacgggaagacctctacatatcagaaaaatgattagaataaataatgactagcaatatttgatttttgctagctaaatagttttcagtttcacaagcacacgatcgtgtccaaatagagcataggcatgtacccgtagttccattcaccacagatgtatgggccgatacgaagaatagcgtacattccggcgttttggatctccttgaagaacctaacgacatcgtagttcccctcaaagttgaactgcagatcgagagaattatggcttaagcaataatataatagtagcagaacacctacgtggttatacatatgcggatgtcgtatatgcatatgcattatgcaaggtggggtgattcacttttatgttattaactgaaggctttcctagaatcccctttcttaggtctaagaatagtacgtcttctttgaattgtgatattaaataaaaaacgacagatgatttctcacaataaccAaaaaaaaaagtcataatggcctgatggagcgactatgtataatctacacatgctagttagaaaaaaccataaatcatcgagagttgaggtaataagaaagaggaaatcgtattagttcaaaccaccatgctaattataaggctgcaaaatacatctgggactgtgaatgcatgccaaacatatggtttggaattaagctaagcaaacgtaatacgaatctgtgcacaattgaccattaaattaagaaactgatgagcagtacaaaTCtacattgaaacaataacgaattgtaaactagaaattaacatgtagcgtcctgcatctattgtccatcatcaggagtaaaagaagcataaaaagcttcgtctttctgcaaacgaactaacctcacgacggcgcggctcatggccattccagaacacatatgtctcgatagcattgaggccgccttccttggccttcttgatcaaatcgggccacatctgcacaaggatggaacaaagatcgcagattcaaattccaaattagcatctccaaatcataacaacgatcaatcaaagatcgcattgcgtgatgaatagatagatatatattatacaatatatgcaatgaccaagaaatgacctcgggggtgctcctggggtagtgaatggagccagagatgacgatgcggcgctcgccgtcgaggatgaggctccggccgtcgtaggagacgatgctgcagccgacgccggcgaccgccgccgcgaggacgaccagcatcaccgccaggcaggCgcccaagctgcacattgcctttgccatggcgtatatgcagagcagccgctagcttatgttgtcgttcttctaaaacggcagagtaaaggggagcaaggttagact
More
|
||||||||||
| CDS seq | atggcaaaggcaatgtgcagcttgggcGcctgcctggcggtgatgctggtcgtcctcgcggcggcggtcgccggcgtcggctgcagcatcgtctcctacgacggccggagcctcatcctcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccgagatgtggcccgatttgatcaagaaggccaaggaaggcggcctcaatgctatcgagacatatgtgttctggaatggccatgagccgcgccgtcgtgagttcaactttgaggggaactacgatgtcgttaggttcttcaaggagatccaaaacgccggaatgtacgctattcttcgtatcggcccatacatctgtggtgaatggaactacggaggtcttcccgtttggttgcgtgatatccctggaataaagtttaggctgcataacaagccttttgagaatgaaatggaggccttcactacacttatagttaagaagatgaaggatgcaaacatgttcgcggggcaaggaggcccaatcatccttgctcagtctgcgcacgaatacatccactggtgtgcggacatggcaaataagcagaatgttggggtcccatggatcatgtgccagcaagacaatgatgtgccaccgaatgtggtcaacacttgtaatggattctattgccatgagtggttttcaaacaggacaagcatccctaaaatgtggacagagaactggactggctggtacagagattgggatcagcccgaatttcgtaggcctactgaagacattgcttttgcagttgcgatgttcttccagatgcgtggttcactacagaactactacatgtaccatggtggtaccaactttggccgcactgcaggaggcccatatattacaacaagctatgattatgatgctcccttggatgagtatggtaatcttaggcagcctaaatatggccacttgaaggagctccactctgtgctcatgtctatggagaagattcttctccatggagattacattgacaccaattacggtgataatgtcacggtcaccaagtacaccttaaatgccacctctgcttgtttcatcaacaaccggtttgatgatagggatgtcaatgttactcttgatggaaccactcacttcttgcctGCTtggtctgttagcatcttaccggattgcaagactgttgcctttaatagcgcaaagatcaagacgcagacgactgtgatggtaaacaagacaagcatggtggagcagcaaacagagcacttcaaatggtcatggatgccagagaacttgaggcccttcatgaccgatgaaaagggcaactttagaaagaatgagcttttggagcagatcgtgacgacaaccgaccagagcgattatttatggtatagaacaagccttgaacacaagggagaggggagctacgtgctatacgtgaacacaactggccatgaactctacgcatttgtgaatggaaagcttgtcggtcaacaatattctcccaatgagaattttaccttccaactcaagtcaccggtaaagcttcatgatggcaagaactatatttctcttctgagcgggacagttggcctaaggaactatggtggctcatttgagctgcttcctgctggaattgttggaggcccagttaaacttattgacagcagtggttctgcgattgatctctccaacaactcctggtcttacaaggctggtttggctggtgagtacaggaagatctatcttgacaagccaggcaacaaatggcgcagccataacagcaccattcctatcaacaggcccttcacctggtacaagaccacgttccaagcccctgccggcgaagactctgtggtggtggacctccatgggctaaacaagggtgtggcatgggtgaatggaaacagcctcgggcgctactggccatcgtacgttgcagcagacatgcccggctgccaccactgcgactaccgtggcgtgttcaaggcagaggttgaagcccaaaagtgcctcacgggttgcggagaaccctcgcaacagctctaccatgtgccacgctccttcctccacaaaggggagcccaacacactcatcctcttcgaggaagccggcggcgacccgtcggaggtggcggtccgcaccgtggtggagggttccgtgtgtgcgtctgccgagcttggtgacactgtcacgctgtcgtgtggcgcgcatggcaggaccatttcgagtgttgatgtggctagcttcggtgtggcacgtggccggtgcggatcctacgacggcgggtgcgactcgaaggtggcttatgacgcatttgcggccgcgtgcgttgggaaggagtcgtgcacggtgcttgtcaccgatgcgtttgccaatgctggttgtgtctctggtgtgctcactgtccaggccacttgctga
More
|
||||||||||
| Protein seq | MAKAMCSLGACLAVMLVVLAAAVAGVGCSIVSYDGRSLILDGERRIVISGSIHYPRSTPEMWPDLIKKAKEGGLNAIETYVFWNGHEPRRREFNFEGNYDVVRFFKEIQNAGMYAILRIGPYICGEWNYGGLPVWLRDIPGIKFRLHNKPFENEMEAFTTLIVKKMKDANMFAGQGGPIILAQSAHEYIHWCADMANKQNVGVPWIMCQQDNDVPPNVVNTCNGFYCHEWFSNRTSIPKMWTENWTGWYRDWDQPEFRRPTEDIAFAVAMFFQMRGSLQNYYMYHGGTNFGRTAGGPYITTSYDYDAPLDEYGNLRQPKYGHLKELHSVLMSMEKILLHGDYIDTNYGDNVTVTKYTLNATSACFINNRFDDRDVNVTLDGTTHFLPAWSVSILPDCKTVAFNSAKIKTQTTVMVNKTSMVEQQTEHFKWSWMPENLRPFMTDEKGNFRKNELLEQIVTTTDQSDYLWYRTSLEHKGEGSYVLYVNTTGHELYAFVNGKLVGQQYSPNENFTFQLKSPVKLHDGKNYISLLSGTVGLRNYGGSFELLPAGIVGGPVKLIDSSGSAIDLSNNSWSYKAGLAGEYRKIYLDKPGNKWRSHNSTIPINRPFTWYKTTFQAPAGEDSVVVDLHGLNKGVAWVNGNSLGRYWPSYVAADMPGCHHCDYRGVFKAEVEAQKCLTGCGEPSQQLYHVPRSFLHKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASAELGDTVTLSCGAHGRTISSVDVASFGVARGRCGSYDGGCDSKVAYDAFAAACVGKESCTVLVTDAFANAGCVSGVLTVQATC |
||||||||||
| Function | Beta-galactosidase 14 [UniProtKB/Swiss-Prot:Q7XFK2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0007030 | OsLima_10g0007030.01 | Chr10 | 11588130 | 11593495 | - | NAM | ||
| CDS seq | atggcaaaggcaatgtgcagcttgggcGcctgcctggcggtgatgctggtcgtcctcgcggcggcggtcgccggcgtcggctgcagcatcgtctcctacgacggccggagcctcatcctcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccgagatgtggcccgatttgatcaagaaggccaaggaaggcggcctcaatgctatcgagacatatgtgttctggaatggccatgagccgcgccgtcgtgagttcaactttgaggggaactacgatgtcgttaggttcttcaaggagatccaaaacgccggaatgtacgctattcttcgtatcggcccatacatctgtggtgaatggaactacggaggtcttcccgtttggttgcgtgatatccctggaataaagtttaggctgcataacaagccttttgagaatgaaatggaggccttcactacacttatagttaagaagatgaaggatgcaaacatgttcgcggggcaaggaggcccaatcatccttgctcagtctgcgcacgaatacatccactggtgtgcggacatggcaaataagcagaatgttggggtcccatggatcatgtgccagcaagacaatgatgtgccaccgaatgtggtcaacacttgtaatggattctattgccatgagtggttttcaaacaggacaagcatccctaaaatgtggacagagaactggactggctggtacagagattgggatcagcccgaatttcgtaggcctactgaagacattgcttttgcagttgcgatgttcttccagatgcgtggttcactacagaactactacatgtaccatggtggtaccaactttggccgcactgcaggaggcccatatattacaacaagctatgattatgatgctcccttggatgagtatggtaatcttaggcagcctaaatatggccacttgaaggagctccactctgtgctcatgtctatggagaagattcttctccatggagattacattgacaccaattacggtgataatgtcacggtcaccaagtacaccttaaatgccacctctgcttgtttcatcaacaaccggtttgatgatagggatgtcaatgttactcttgatggaaccactcacttcttgcctGCTtggtctgttagcatcttaccggattgcaagactgttgcctttaatagcgcaaagatcaagacgcagacgactgtgatggtaaacaagacaagcatggtggagcagcaaacagagcacttcaaatggtcatggatgccagagaacttgaggcccttcatgaccgatgaaaagggcaactttagaaagaatgagcttttggagcagatcgtgacgacaaccgaccagagcgattatttatggtatagaacaagccttgaacacaagggagaggggagctacgtgctatacgtgaacacaactggccatgaactctacgcatttgtgaatggaaagcttgtcggtcaacaatattctcccaatgagaattttaccttccaactcaagtcaccggtaaagcttcatgatggcaagaactatatttctcttctgagcgggacagttggcctaaggaactatggtggctcatttgagctgcttcctgctggaattgttggaggcccagttaaacttattgacagcagtggttctgcgattgatctctccaacaactcctggtcttacaaggctggtttggctggtgagtacaggaagatctatcttgacaagccaggcaacaaatggcgcagccataacagcaccattcctatcaacaggcccttcacctggtacaagaccacgttccaagcccctgccggcgaagactctgtggtggtggacctccatgggctaaacaagggtgtggcatgggtgaatggaaacagcctcgggcgctactggccatcgtacgttgcagcagacatgcccggctgccaccactgcgactaccgtggcgtgttcaaggcagaggttgaagcccaaaagtgcctcacgggttgcggagaaccctcgcaacagctctaccatgtgccacgctccttcctccacaaaggggagcccaacacactcatcctcttcgaggaagccggcggcgacccgtcggaggtggcggtccgcaccgtggtggagggttccgtgtgtgcgtctgccgagcttggtgacactgtcacgctgtcgtgtggcgcgcatggcaggaccatttcgagtgttgatgtggctagcttcggtgtggcacgtggccggtgcggatcctacgacggcgggtgcgactcgaaggtggcttatgacgcatttgcggccgcgtgcgttgggaaggagtcgtgcacggtgcttgtcaccgatgcgtttgccaatgctggttgtgtctctggtgtgctcactgtccaggccacttgctga
More
|
|||||||
| Protein seq | MAKAMCSLGACLAVMLVVLAAAVAGVGCSIVSYDGRSLILDGERRIVISGSIHYPRSTPEMWPDLIKKAKEGGLNAIETYVFWNGHEPRRREFNFEGNYDVVRFFKEIQNAGMYAILRIGPYICGEWNYGGLPVWLRDIPGIKFRLHNKPFENEMEAFTTLIVKKMKDANMFAGQGGPIILAQSAHEYIHWCADMANKQNVGVPWIMCQQDNDVPPNVVNTCNGFYCHEWFSNRTSIPKMWTENWTGWYRDWDQPEFRRPTEDIAFAVAMFFQMRGSLQNYYMYHGGTNFGRTAGGPYITTSYDYDAPLDEYGNLRQPKYGHLKELHSVLMSMEKILLHGDYIDTNYGDNVTVTKYTLNATSACFINNRFDDRDVNVTLDGTTHFLPAWSVSILPDCKTVAFNSAKIKTQTTVMVNKTSMVEQQTEHFKWSWMPENLRPFMTDEKGNFRKNELLEQIVTTTDQSDYLWYRTSLEHKGEGSYVLYVNTTGHELYAFVNGKLVGQQYSPNENFTFQLKSPVKLHDGKNYISLLSGTVGLRNYGGSFELLPAGIVGGPVKLIDSSGSAIDLSNNSWSYKAGLAGEYRKIYLDKPGNKWRSHNSTIPINRPFTWYKTTFQAPAGEDSVVVDLHGLNKGVAWVNGNSLGRYWPSYVAADMPGCHHCDYRGVFKAEVEAQKCLTGCGEPSQQLYHVPRSFLHKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASAELGDTVTLSCGAHGRTISSVDVASFGVARGRCGSYDGGCDSKVAYDAFAAACVGKESCTVLVTDAFANAGCVSGVLTVQATC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0340600 | RBH | 0.0 | 0.000000 | 17.603842 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g19960 | RBH | 0.0 | 0.000000 | 4.382146 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0340600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0007230 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0007260 | RBH | 0.0 | 0.0 | 0.663159 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006990 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0007430 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0007300 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0178300 | RBH | 0.8989885 | 0.0432255 | 0.0138525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0007280 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0189400 | RBH | 1.2245875 | 0.035202 | 0.348495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023110 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0007040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0007530 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006940 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0007600 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G007260 | RBH | 0.0 | 0.0 | 2.223267 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0007280 | RBH | 0.0 | 0.0 | 0.549084 |
