Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0006870 | OGI:01011440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:11353201-11355220 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactgggtttttgacttgcacttcccttgctttacataagacgatgtcttgccacaagtcgttttcatgtgtcctgctatgtggcacctagagcaaaccttggtgtgcaccttgttggaatccacgtgcaaggcaccagaagcccgcgcttcatgggtctgtcccttgctggcctctacgtgcaaggcaccagaagccattgcttcatggttccgttcaccgtcaatgcatgtggcgctgttgtgtccaggtttgttgcactttttgcaaaaccttgtacgtgcaaccctctttggattgtcagctggatgcttcagacgactgtttgtagggcgacccctgcagcgcctcggttcgggaggctgaattggtacaccattacgagcagggGAgttttgctcaacaatagttggagtgggggcactggacaccatgcatgactgctcggatgtgggtgggacaccaggtgctggagtgtcatcactttgccctagactattatcgttcgtgccttcagtcgacgcgctacgtggctgtgcactggcaagcttcctcttcaactcttctattccctccatagcggaatggaagttttccaccgtcaggtccccctgctgcacaagctctagtgccgccatgtaaagcatgttgtgacggaacgtcttggattgcatggaacctgcctcggacctgtaagctgccatgtgcagtggtagaacatcccttgcacctgttgtccatctcttcattaaattaccatccgagatacgctgcccgccaagatgtattataacctgcataaaacaaacagaagatgagatcgatgcaatggccaaagaaagcactgttattatgacctgcataaaaactgagtagtttaaaaaagcactgtttttttaaaacagatacatgcacccattagactgaatgttattcaactttttacagaattcatttttctggtgttatgtcagaagattccagctttatcagtggacagttttatagagttgtgtggccacaactgccccccccccccccacggaaaaaaattgcatgcatggtaaattgtttagcacgtaacaaacaaaatagcacacaccagcaagttaggagacactgtatgttttaacttacccggattgcgtgacggcatagcaatcccatgtgctcacacatcccacactcgcacgtcagcctggccatctcaccaatcacagtaaccttgaacaatgccttctgccatctctcaagatcgtcacttctaacgtgcttcacagtgaactcagtgacaccgatcgtgttcgttacgtaaaacatccctgacttccgtgtttccttaacgaacagtgtgaagattgctcgtgtgtagactgacgccgcgtgctactcaaatatgtagcccgtgctgcacacgcgtggtgtctgtaagaaatatactGgggggtgacatagggaaaaaaaacaaaaaagcattgataaggcacaacgactgggaggtaaaaaatttggtatcgaacgaatgaaactcgctagcctgttttgtcacgtgcacctcacggtcctcttgggcatcacgatcagccaatagcttggagtactgcgagacaaacaagtgcattggagcattctttgatataagcttcttcagtagatgatttgcgcactcgctgcgctgcgtgctagtttgccctgcacagaactccccggcaaagtatggcttggcccaccgttttctgttcttgaaaatctgagtgaggaacttgttgcctgtgaggttgtaccgttctagaaggcatggccaagcgctctcaaactcatcagtggtgtacatgccattgactagcttcgtgaattcagctctgaacgggtgctgcttacagaaacacggaccaagcccttcgcgcgccttacagatcacatgccacttttaccagtgatgtgttgtgttaggccacacaacctcgattgccaactccatctgagtacattggtctgtttcattggaagaagagtcat
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| CDS seq | atgactcttcttccaatgaaacagaccaatgtactcagatggagttggcaatcgaggttgtgtggcctaacacaacacatcactgggcttggtccgtgtttctgtaagcagcacccgttcagagctgaattcacgaagctagtcaatggcatgtacaccactgatgagtttgagagcgcttggccatgccttctagaacggtacaacctcacaggcaacaagttcctcactcagattttcaagaacagaaaacggtgggccaagccatactttgccggggagttctgtgcagggcaaactagcacgcagcgcagcgagtgcgcaaatcatctactgaagaagcttatatcaaagaatgctccaatgcacttgtttgtctcgcagtactccaagctattggctgatcgtgatgcccaagaggaccgtgaggtgcaccacgcggcgtcagtctacacacgagcaatcttcacactgttcgttaaggaaacacggaagtcagggatgttttacgtaacgaacacgatcggtgtcactgagttcactgtgaagcacgttagaagtgacgatcttgagagatggcagaaggcattgttcaaggttactgtgattggtgagatggccaggctgacgtgcgagtgtgggatgtgtgagcacatgggattgctatgccgtcacgcaatccgggttataatacatcttggcgggcagcgtatctcggatggtaatttaatgaagagatggacaacaggtgcaagggatgttctaccactgcacatggcagcttacaggtccgaggcaggttccatgcaatccaagacgttccgtcacaacatgctttacatggcggcactagagcttgtgcagcagggggacctgacggtggaaaacttccattccgctatggagggaatagaagagttgaagaggaagcttgccagtgcacagccacgtagcgcgtcgactgaaggcacgaacgataatagtctagggcaaagtgatgacactccagcacctggtgtcccacccacatccgagcagtcatgcatggtgtccagtgcccccactccaactattgttgagcaaaacTCccctgctcgtaatggtgtaccaattcagcctcccgaaccgaggcgctgcaggggtcgccctacaaacagtcgtctgaagcatccagctgacaatccaaagagggttgcacgtacaaggttttgcaaaaagtgcaacaaacctggacacaacagcgccacatgcattgacggtgaacggaaccatgaagcaatggcttctggtgccttgcacgtagaggccagcaagggacagacccatgaagcgcgggcttctggtgccttgcacgtggattccaacaaggtgcacaccaaggtttgctctaggtgccacatagcaggacacatgaaaacgacttgtggcaagacatcgtcttatgtaaagcaagggaagtgcaagtcaaaaacccagtga
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| Protein seq | MTLLPMKQTNVLRWSWQSRLCGLTQHITGLGPCFCKQHPFRAEFTKLVNGMYTTDEFESAWPCLLERYNLTGNKFLTQIFKNRKRWAKPYFAGEFCAGQTSTQRSECANHLLKKLISKNAPMHLFVSQYSKLLADRDAQEDREVHHAASVYTRAIFTLFVKETRKSGMFYVTNTIGVTEFTVKHVRSDDLERWQKALFKVTVIGEMARLTCECGMCEHMGLLCRHAIRVIIHLGGQRISDGNLMKRWTTGARDVLPLHMAAYRSEAGSMQSKTFRHNMLYMAALELVQQGDLTVENFHSAMEGIEELKRKLASAQPRSASTEGTNDNSLGQSDDTPAPGVPPTSEQSCMVSSAPTPTIVEQNSPARNGVPIQPPEPRRCRGRPTNSRLKHPADNPKRVARTRFCKKCNKPGHNSATCIDGERNHEAMASGALHVEASKGQTHEARASGALHVDSNKVHTKVCSRCHIAGHMKTTCGKTSSYVKQGKCKSKTQ |
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| Function | Protein FAR-RED IMPAIRED RESPONSE 1 [UniProtKB/Swiss-Prot:Q9SWG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0006870 | OsLima_10g0006870.01 | Chr10 | 11353201 | 11355220 | - | NAM | ||
| CDS seq | atgactcttcttccaatgaaacagaccaatgtactcagatggagttggcaatcgaggttgtgtggcctaacacaacacatcactgggcttggtccgtgtttctgtaagcagcacccgttcagagctgaattcacgaagctagtcaatggcatgtacaccactgatgagtttgagagcgcttggccatgccttctagaacggtacaacctcacaggcaacaagttcctcactcagattttcaagaacagaaaacggtgggccaagccatactttgccggggagttctgtgcagggcaaactagcacgcagcgcagcgagtgcgcaaatcatctactgaagaagcttatatcaaagaatgctccaatgcacttgtttgtctcgcagtactccaagctattggctgatcgtgatgcccaagaggaccgtgaggtgcaccacgcggcgtcagtctacacacgagcaatcttcacactgttcgttaaggaaacacggaagtcagggatgttttacgtaacgaacacgatcggtgtcactgagttcactgtgaagcacgttagaagtgacgatcttgagagatggcagaaggcattgttcaaggttactgtgattggtgagatggccaggctgacgtgcgagtgtgggatgtgtgagcacatgggattgctatgccgtcacgcaatccgggttataatacatcttggcgggcagcgtatctcggatggtaatttaatgaagagatggacaacaggtgcaagggatgttctaccactgcacatggcagcttacaggtccgaggcaggttccatgcaatccaagacgttccgtcacaacatgctttacatggcggcactagagcttgtgcagcagggggacctgacggtggaaaacttccattccgctatggagggaatagaagagttgaagaggaagcttgccagtgcacagccacgtagcgcgtcgactgaaggcacgaacgataatagtctagggcaaagtgatgacactccagcacctggtgtcccacccacatccgagcagtcatgcatggtgtccagtgcccccactccaactattgttgagcaaaacTCccctgctcgtaatggtgtaccaattcagcctcccgaaccgaggcgctgcaggggtcgccctacaaacagtcgtctgaagcatccagctgacaatccaaagagggttgcacgtacaaggttttgcaaaaagtgcaacaaacctggacacaacagcgccacatgcattgacggtgaacggaaccatgaagcaatggcttctggtgccttgcacgtagaggccagcaagggacagacccatgaagcgcgggcttctggtgccttgcacgtggattccaacaaggtgcacaccaaggtttgctctaggtgccacatagcaggacacatgaaaacgacttgtggcaagacatcgtcttatgtaaagcaagggaagtgcaagtcaaaaacccagtga
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| Protein seq | MTLLPMKQTNVLRWSWQSRLCGLTQHITGLGPCFCKQHPFRAEFTKLVNGMYTTDEFESAWPCLLERYNLTGNKFLTQIFKNRKRWAKPYFAGEFCAGQTSTQRSECANHLLKKLISKNAPMHLFVSQYSKLLADRDAQEDREVHHAASVYTRAIFTLFVKETRKSGMFYVTNTIGVTEFTVKHVRSDDLERWQKALFKVTVIGEMARLTCECGMCEHMGLLCRHAIRVIIHLGGQRISDGNLMKRWTTGARDVLPLHMAAYRSEAGSMQSKTFRHNMLYMAALELVQQGDLTVENFHSAMEGIEELKRKLASAQPRSASTEGTNDNSLGQSDDTPAPGVPPTSEQSCMVSSAPTPTIVEQNSPARNGVPIQPPEPRRCRGRPTNSRLKHPADNPKRVARTRFCKKCNKPGHNSATCIDGERNHEAMASGALHVEASKGQTHEARASGALHVDSNKVHTKVCSRCHIAGHMKTTCGKTSSYVKQGKCKSKTQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0381800 | RBH | 0.183438 | 0.000000 | 1.116402 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0381800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0007060 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0007080 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0007260 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0007140 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0174700 | RBH | 0.0079475 | 0 | 0.005764 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0007110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0185100 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0006880 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0007370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006780 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0007440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G007090 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0007130 | RBH | 0.0 | 0.0 | 0.0 |
