Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0006390 | OGI:10031640 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:10545717-10548915 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatctaggaacaaactctgatatggacacttcatttgttgataaTGtggcaacaccttggctagaacttgtcgtgttcccaccatgcgcAaaggtgaacgcaggttttgatggtgcaacaaagctattggtgtcaacatcatgaagcatgacgagaatgtcgagcattgttggccgatccactgggttctcttggacacaaaggagcccgaagtggacacatttgagcagctccatatctgataggccgcggccaccaccaagcagtgatgcatcagcaatttctagtggcgtccccttcacccagtggtcccacacctgaaatattgcatggttatcaagtcttattgcacggaaaatgccattagttctaggaaattgtataactctttctaaatagtaggataggacatacatagctaagcAgattgttagattcttccacttcacccgacacatcagtgttccttcttcctgtcacaatctccaggactAaaattccgaagctatagacatctaacttgacagatacatgtccaagaactgcatactctggcgccatatatcctctgcatgcatgcattccagattatgagtaaattctgaaattctgatacataacctttatatttttatgtgcaaaatctaactaactaaaattaatttcttctcaagtttcataagttgactacatatgtatattcgaaacaatttatgcgttataaccagaaagcagcatgtaagtaaggaaagaatttgtcggagtctcatcattttcttacagcgtcccaacgacatggtttgtgatactagcagttttagtaccatcaaatagcctcgccaagccaaagtcggagatctttgggttcatgttggcatctaacaatacattgctggccttgaggtcacgatgaatgatcTttgtctgagaatcctcgtggaggtagagcaggccacgtgctatcccatgtatgatctgatatcttgtttcccagtttaatagtcctcgcttctctggatctaccaaatacAaaatttattattcatgaaaactatgttcagttactatccactacccaatcatgctactagttgtcacttgtctgcataatggtaattattgtagcaaagaatactaactagtgtatcagagtggaatgcagtgatcaagttcgtgtatatgttgttaccaaaaaggaaggtgtcaaggcttcgatttggcaggtactcgtaaatgagcagcttttcctcccccttgatgcaaacacctagaagctttgcaagattgttgtgccggagtttggcaacaaATaacaactcatttctcagctgttcaaggccttgtcctgatgtcttgtcaagccttttcacagctatttcacgtccatcaggcAaaaacccctaacatacataagtaataatgtcagatcatatcagcagatttctcatttgtattttcatatcaacatcagcaacaaggtatatataccttgtatactgctccaaaaccaccatgaccaagcttgttatgttctgcaaagctagctgttgcctttcttagtgttgccaggtcaaagagaagtgaccctgaatagatatcattctcatcggtatctgcaatatacacacatttttttcatcatcaccagacattaccatgagttaacatacaataaacaagtgaacgtccaCTcgggtgattaaaatcactgtccattgatgttctaatcattttgttctaagttcactcagctattctagtttcagctctttggataaataaaaaatattttccacatgcctaatgcccgggAaattcttttaatcactaatgcacgagttgttttactctccaatccaaactatgggtggctcttggttcagtcggttgtgctgcaactgcgtacatagagtggtcgaacctatggctgtttcttatgttggcattgaccatatgcgtttttgttagtccttagtacatattgaatagaaaatggagaggactagaagaagcatgtggctcacactcacattgtttcgcttgcaatttcctccagaggtaaaaggagagcagagacagaagtacaactagagaagcaaggacagacacaacaacaattgctgcattttttgggcgatttctcctttttcctgcatgcagttaagtgcaatacattattactacctcagaacaataatacaataatcatagttatattccctccggtaattaatatataacgttttaatactaatattagcgtggtcaagatgtaagacctataataaataataattttacaaaatggaaacgaatgcaaagtttaccctctagcggcggtagcgacggcgacggcaatggcgatgacgatgatccaggtgacgacgacgcggcgagcctcaccgttgggtcaccgtcgtagaagaggaaggtctcgtacctgaggttgcaccacacggcgtcaaacctccctcctatccttccagcaaaaaccttgggcatgtccaccctgagcgcctccaggcacgcccggcacgccgcagccgcctggtccggcgtgcactgcaccacaccgtagatgttgtgcaccatgtcctccgtcgtcgacgtgaacccgtcgccggaggccatcagcccggcggcgtacctccgcgtcgagttgtaggccgcccagtcggccagcgcgccggcgaggcgggccacgagcgcgtcgaagcggccggcgtcgacggtgacgcggttctcgctggggctcccgatctggacctccatgttgtcgggcctcgccgtgaagtccgcgtacgagaaccgggcgaggcagcggtcgtagaacacggccacgtccctgtcgccgcggcactcgccgaaggcgacggccggcacggcggcgaggcaggacgcgcacccggcgcggtcggtgtcgccgcggcagagcgcgaggccccagaccgcgtccgcgccgccacgcccggccgacgcggtggcgaagcgcgcggtggagttgggcgtgatggcggacagcgcggtgagcacgacgcggacgttgctgtggtaggtggtgttggcggcgtaggagctgccgttgttgcatgaccagttcatgagctccagagcgcggccatggcggggcaggggaaggagatttgcaagcagaactagtgGTAgtagggttggccacaacaccatcagcgcagccat
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| CDS seq | atggctgcgctgatggtgttgtggccaaccctacTACcactagttctgcttgcaaatctccttcccctgccccgccatggccgcgctctggagctcatgaactggtcatgcaacaacggcagctcctacgccgccaacaccacctaccacagcaacgtccgcgtcgtgctcaccgcgctgtccgccatcacgcccaactccaccgcgcgcttcgccaccgcgtcggccgggcgtggcggcgcggacgcggtctggggcctcgcgctctgccgcggcgacaccgaccgcgccgggtgcgcgtcctgcctcgccgccgtgccggccgtcgccttcggcgagtgccgcggcgacagggacgtggccgtgttctacgaccgctgcctcgcccggttctcgtacgcggacttcacggcgaggcccgacaacatggaggtccagatcgggagccccagcgagaaccgcgtcaccgtcgacgccggccgcttcgacgcgctcgtggcccgcctcgccggcgcgctggccgactgggcggcctacaactcgacgcggaggtacgccgccgggctgatggcctccggcgacgggttcacgtcgacgacggaggacatggtgcacaacatctacggtgtggtgcagtgcacgccggaccaggcggctgcggcgtgccgggcgtgcctggaggcgctcagggtggacatgcccaaggtttttgctggaaggataggagggaggtttgacgccgtgtggtgcaacctcaggtacgagaccttcctcttctacgacggtgacccaacggtgaggctcgccgcgtcgtcgtcacctggatcatcgtcatcgccattgccgtcgccgtcgctaccgccgctagagggaaaaaggagaaatcgcccaaaaaatgcagcaattgttgttgtgtctgtccttgcttctctagttgtacttctgtctctgctctccttttacctctggaggaaattgcaagcgaaacaatctagctttgcagaacataacaagcttggtcatggtggttttggagcagtatacaaggggttttTgcctgatggacgtgaaatagctgtgaaaaggcttgacaagacatcaggacaaggccttgaacagctgagaaatgagttgttATttgttgccaaactccggcacaacaatcttgcaaagcttctaggtgtttgcatcaagggggaggaaaagctgctcatttacgaaggatatatggcgccagagtatgcagttcttggacatgtatctgtcaagttagatgtctatagcttcggaatttTagtcctggagattgtgacaggaagaaggaacactgatgtgtcgggtgaagtggaagaatctaacaatcTgcttagctatgtgtgggaccactgggtgaaggggacgccactagaaattgctgatgcatcactgcttggtggtggccgcggcctatcagatatggagctgctcaaatgtgtccacttcgggctcctttgtgtccaagagaacccagtggatcggccaacaatgctcgacattctcgtcatgcttcatgatgttgacaccaatagctttgttgcaccatcaaaacctgcgttcaccttTgcgcatggtgggaacacgacaagttctagccaaggtgttgccaCAttatcaacaaatgaagtgtccatatcagagtttgttcctagatag
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| Protein seq | MAALMVLWPTLLPLVLLANLLPLPRHGRALELMNWSCNNGSSYAANTTYHSNVRVVLTALSAITPNSTARFATASAGRGGADAVWGLALCRGDTDRAGCASCLAAVPAVAFGECRGDRDVAVFYDRCLARFSYADFTARPDNMEVQIGSPSENRVTVDAGRFDALVARLAGALADWAAYNSTRRYAAGLMASGDGFTSTTEDMVHNIYGVVQCTPDQAAAACRACLEALRVDMPKVFAGRIGGRFDAVWCNLRYETFLFYDGDPTVRLAASSSPGSSSSPLPSPSLPPLEGKRRNRPKNAAIVVVSVLASLVVLLSLLSFYLWRKLQAKQSSFAEHNKLGHGGFGAVYKGFLPDGREIAVKRLDKTSGQGLEQLRNELLFVAKLRHNNLAKLLGVCIKGEEKLLIYEGYMAPEYAVLGHVSVKLDVYSFGILVLEIVTGRRNTDVSGEVEESNNLLSYVWDHWVKGTPLEIADASLLGGGRGLSDMELLKCVHFGLLCVQENPVDRPTMLDILVMLHDVDTNSFVAPSKPAFTFAHGGNTTSSSQGVATLSTNEVSISEFVPR |
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| Function | Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0006390 | OsLima_10g0006390.01 | Chr10 | 10545717 | 10548915 | - | NAM | ||
| CDS seq | atggctgcgctgatggtgttgtggccaaccctacTACcactagttctgcttgcaaatctccttcccctgccccgccatggccgcgctctggagctcatgaactggtcatgcaacaacggcagctcctacgccgccaacaccacctaccacagcaacgtccgcgtcgtgctcaccgcgctgtccgccatcacgcccaactccaccgcgcgcttcgccaccgcgtcggccgggcgtggcggcgcggacgcggtctggggcctcgcgctctgccgcggcgacaccgaccgcgccgggtgcgcgtcctgcctcgccgccgtgccggccgtcgccttcggcgagtgccgcggcgacagggacgtggccgtgttctacgaccgctgcctcgcccggttctcgtacgcggacttcacggcgaggcccgacaacatggaggtccagatcgggagccccagcgagaaccgcgtcaccgtcgacgccggccgcttcgacgcgctcgtggcccgcctcgccggcgcgctggccgactgggcggcctacaactcgacgcggaggtacgccgccgggctgatggcctccggcgacgggttcacgtcgacgacggaggacatggtgcacaacatctacggtgtggtgcagtgcacgccggaccaggcggctgcggcgtgccgggcgtgcctggaggcgctcagggtggacatgcccaaggtttttgctggaaggataggagggaggtttgacgccgtgtggtgcaacctcaggtacgagaccttcctcttctacgacggtgacccaacggtgaggctcgccgcgtcgtcgtcacctggatcatcgtcatcgccattgccgtcgccgtcgctaccgccgctagagggaaaaaggagaaatcgcccaaaaaatgcagcaattgttgttgtgtctgtccttgcttctctagttgtacttctgtctctgctctccttttacctctggaggaaattgcaagcgaaacaatctagctttgcagaacataacaagcttggtcatggtggttttggagcagtatacaaggggttttTgcctgatggacgtgaaatagctgtgaaaaggcttgacaagacatcaggacaaggccttgaacagctgagaaatgagttgttATttgttgccaaactccggcacaacaatcttgcaaagcttctaggtgtttgcatcaagggggaggaaaagctgctcatttacgaaggatatatggcgccagagtatgcagttcttggacatgtatctgtcaagttagatgtctatagcttcggaatttTagtcctggagattgtgacaggaagaaggaacactgatgtgtcgggtgaagtggaagaatctaacaatcTgcttagctatgtgtgggaccactgggtgaaggggacgccactagaaattgctgatgcatcactgcttggtggtggccgcggcctatcagatatggagctgctcaaatgtgtccacttcgggctcctttgtgtccaagagaacccagtggatcggccaacaatgctcgacattctcgtcatgcttcatgatgttgacaccaatagctttgttgcaccatcaaaacctgcgttcaccttTgcgcatggtgggaacacgacaagttctagccaaggtgttgccaCAttatcaacaaatgaagtgtccatatcagagtttgttcctagatag
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| Protein seq | MAALMVLWPTLLPLVLLANLLPLPRHGRALELMNWSCNNGSSYAANTTYHSNVRVVLTALSAITPNSTARFATASAGRGGADAVWGLALCRGDTDRAGCASCLAAVPAVAFGECRGDRDVAVFYDRCLARFSYADFTARPDNMEVQIGSPSENRVTVDAGRFDALVARLAGALADWAAYNSTRRYAAGLMASGDGFTSTTEDMVHNIYGVVQCTPDQAAAACRACLEALRVDMPKVFAGRIGGRFDAVWCNLRYETFLFYDGDPTVRLAASSSPGSSSSPLPSPSLPPLEGKRRNRPKNAAIVVVSVLASLVVLLSLLSFYLWRKLQAKQSSFAEHNKLGHGGFGAVYKGFLPDGREIAVKRLDKTSGQGLEQLRNELLFVAKLRHNNLAKLLGVCIKGEEKLLIYEGYMAPEYAVLGHVSVKLDVYSFGILVLEIVTGRRNTDVSGEVEESNNLLSYVWDHWVKGTPLEIADASLLGGGRGLSDMELLKCVHFGLLCVQENPVDRPTMLDILVMLHDVDTNSFVAPSKPAFTFAHGGNTTSSSQGVATLSTNEVSISEFVPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0327000 | RBH | 0.0 | 0.130200 | 0.310305 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g17960 | RBH | 0.0 | 0.082427 | 0.075187 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0327000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006550 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0006430 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006290 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0006720 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0006420 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0159300 | RBH | 0.1237945 | 0.139219 | 0.021295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0006600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0173400 | SBH | 0.1317545 | 0.0325715 | 0.0018115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0006370 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0006430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0006640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006300 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0006720 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G006540 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006650 | RBH | 0.0 | 0.0 | 0.0 |
