Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0005720 | OGI:10024960 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:8519650-8521025 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaccagatgccgcgtgaccatgatcttcgaagtgagcttagcagcactgcatatgcacaagttaaaacatcagtaactgccaagctgagctcctgcaatcaaaaagtacccggagaacaaaatcacagtagtacaccatggtaataccttaagttttctatcaggcaacaatcttgttttgatttgtaaatcgaaacatcacccccaaaaaagtaacctgagaaggacaaaagtgattactcggtgatgccagagcaacgaagatcacaaagcagttattgccatggaataaaactatagcatccaccatggaagatgattagtagcatcaacaaggaatacaggacaagtaatccaataatgtagattaagtcaagcctactctagagcataccattcccatttgaatagtctaaagtattgggctaccttggctaaaaatgacatgaaaatgtatgccaactcccaaaataaacttaaggctttgagtgcacaagaagcagttattataggtctaatttttttgggactgcaattctagaaaaaaaaaaaccagtaaaccataggggcataacataccttgtttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctactctgtatagctaaatgcaacggtgtccacccatcctgcatgaaacaaaaaaatataaaagaaaaaatcgatttcactgtgaagggttgaactgataagaaaaagaaaaatgcacaatagtacattacattatcaacaacattgaagggccaacatgccataaaaatatctaaaattggagtagaaattgttatgtacttatgttgctagagagaaaccagatcaatgtgagaggcactaacatcacaatgtttactatattcctcattgcagccttgtaatgtgcggttaggtagccgacaatgttaattaggaactatttataataaacattaatagcaagtcgatcataaagttgaatgattctttatcttggttatctatactaatataaaaaggagcagttgtccccctccaatcctacagaccaaatcacccgaatcgatctctaccgtccatctgcgcgcttgatttcaccaccgcacgatccatccatccacgccacgctgaatacttcgctcctcctccacccgccaagacatcactccacacgcgaagacttcgcttctcctcctcgctagctcctcctcctccccggatgttctgccgccgcgccgccgcatcctcgctggatatcctccccgcgtagactgccgctgccggagcctctgattcttcttcttccccgccaccggagccagtgcttcttccccgcgtggactgccactgcat
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| CDS seq | atgcagtggcagtccacgcggggaagaagcactggctccggtggcggggaagaagaagaatcagaggctccggcagcggcagtctacgcggggaggatatccagcgaggatgcggcggcgcggcggcagaacatccggggaggaggaggagctagcgaggaggagaagcgaagtcttcgcgtgtggagtgatgtcttggcgggtggaggaggagcgaagtattcagcgtggcgtggatggatggatcgtgcggtggatgggtggacaccgttgcatttagctatacagagtagaaatagagatataacaatgatattgcttgtcaatggtgcagatgagacaagaagaaacaaggagctcagcttggcagttactgatgttttaacttgtgcatatgcagtgctgctaagctcacttcgaagatcatggtcacgcggcatctggtga
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| Protein seq | MQWQSTRGRSTGSGGGEEEESEAPAAAVYAGRISSEDAAARRQNIRGGGGASEEEKRSLRVWSDVLAGGGGAKYSAWRGWMDRAVDGWTPLHLAIQSRNRDITMILLVNGADETRRNKELSLAVTDVLTCAYAVLLSSLRRSWSRGIW |
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| Function | Ankyrin repeat domain-containing protein EMB506, chloroplastic [UniProtKB/Swiss-Prot:Q9SQK3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0005720 | OsLima_10g0005720.01 | Chr10 | 8519650 | 8521025 | - | NAM | ||
| CDS seq | atgcagtggcagtccacgcggggaagaagcactggctccggtggcggggaagaagaagaatcagaggctccggcagcggcagtctacgcggggaggatatccagcgaggatgcggcggcgcggcggcagaacatccggggaggaggaggagctagcgaggaggagaagcgaagtcttcgcgtgtggagtgatgtcttggcgggtggaggaggagcgaagtattcagcgtggcgtggatggatggatcgtgcggtggatgggtggacaccgttgcatttagctatacagagtagaaatagagatataacaatgatattgcttgtcaatggtgcagatgagacaagaagaaacaaggagctcagcttggcagttactgatgttttaacttgtgcatatgcagtgctgctaagctcacttcgaagatcatggtcacgcggcatctggtga
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| Protein seq | MQWQSTRGRSTGSGGGEEEESEAPAAAVYAGRISSEDAAARRQNIRGGGGASEEEKRSLRVWSDVLAGGGGAKYSAWRGWMDRAVDGWTPLHLAIQSRNRDITMILLVNGADETRRNKELSLAVTDVLTCAYAVLLSSLRRSWSRGIW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g13870 | RBH | 0.000000 | 0.292291 | 0.239846 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005780 | RBH | 0.000000 | 0.0 | 1.288466 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005660 | RBH | 0.193988 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005600 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0005600 | RBH | 0.749548 | 0.0 | 1.621963 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0127700 | SBH | 1.979701 | 3.166231 | 0.2606865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005800 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0133000 | SBH | 0.5232205 | 0.1100165 | 0.062759 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0005760 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005620 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005940 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G005810 | RBH | 0.000000 | 0.0 | 0.505637 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005830 | RBH | 0.0 | 0.0 | 0.000000 |
