Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0005090 | OGI:10020830 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:6992615-6996677 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatcttccaacttgtgttactctatatatcccaataattaccgtctctatccacaaatataagcattttatccaagcgcatagctagaaaatgcttacatttcttgacagagggagtatgtttgtttaccgataacaacgagataacaatggttggttacatggatggaagtgttgaatcctctgcttctactagaggaaagagcgaaaccgttgatagaattcatctataccaacttcgtttgccgggtcggccgaaagattcagtacgaccaatttcattaagaaagggatctagaccaacttctcaccgttctcattgaagggttactctcatacagctcgtccgcgcccctggatgctccagagtagtacttgaagtggtgtgctagtaacgacacgatggtgatgaactcgcagccattgctgagctgcctggcatgcgactcctggctgcaatggttcgcagcgtacagcaacatctccacccacacccctaggatgagttccaaggtgtcacgctgctcacaccaccgcgactcgatgccgagaagctcgttggcgagcaacactgagtacatgtttgcactgtcgcggatggattcgccgtgtggatttggtgcctttactgatccctgagacagaggagggcaattaggaaaaaaaaatagtgcaaaatagtttgtgttagtatgtatgctccttttagaatttcaggggtagactagcaatgtctattttaaccataagtggatgtaaagtagtgcacattttaatatttgtgtggtatcatattgaaagttatgtttaactctgtttcctgacttcatttcaaccaacaaagtctactgaaatcaatgatgagtttgcctgaggaaacaatgtcagcaatttcgactaagtaagagaattcgctcaaataaaatcaaactggaaatgctatttttcaggtgcaatttaggtagattcagtaaagtcagaaagtataaaaacgaaattaaacttgtcaggatcttttttagtctcaaatatatctactgacgacatgagtttcagttgaattgcaatcgaaggtatacctacgaactgaaattgcaaacagtgaaataagccagaacttgggagttgggacgttgttccaagactaacaaatagatttttgaacagtaagaatgaagttggcgccacagtccataccagtgcgaattggcagaaactccacacgatctccgcgagcttctccctccgtgggatacttgagcaactagggccatcatggtggagcaattccttgagcatacagtatgggttccagcttatgggcgatgccgccaccgggttatccttctcaccaccaaagcccatacgacaatgcccttctatctgttcacaggaggggagatgtatgttgtgtcgtgcagcaccgggcagcatgttgggcttcaccaccagcagaaacatcatgtaattggacagcacctcggtagcctcaacgagctctttcgcgtgcctggccttggatctccggatgtacagctcggtcgcgatgtgccaaacaaggatgctctcgtcgaagtcgatgttgacgctccatcgggcaaagtcgtcataggccttcatactcttgagtatgaagctgcccctggagttcaggtcggtatccttgtattgcagcgctcgctctttctcttccagtgcttgcaaaaccagtttcttgagatcttgtattgagaaagagccggtattcgagaaggtgcccgagaagtgcatcatgttccaccagtcctggaggcccaatctggttgccaacctgctcccaatctcgttcgtgttgcgggcgcaaaggtggaacagattgtactgaccaattgagcctgaccagagtctccggcttgccgggtggacacggcggctaaaggatgtgataatgtggagaggccactcccatgccctgcccctccggtgcatcagagaacatgtccaggtggatagcacagccctgcacactgatatgatctccaggaccaaggccccaaccagcagcacatagctgatgaccacatcctctctgctgtacccatctcctctgctgctgatgatgatcagctggaacagcaggaacgtggtggccgtgccgaacaacgagacgaaatggatgcagaagccgtaccatgtgtggatcaccgctgccttggtgtagaggaagtcgtacatcagggacagctccatctccaccagcttgtacagatccatccccaggtaggatatcaccgatcgccgtttggatcgtgagaggagcgacggatttggcagcattatgatatcggcaaagacgcctttgcagatgtcgaattgggaatgggctccaagcagcagctcctcttcgctggtacccaatgccagcaactcgtaagggtcagtcttgaactttctggtgcttatgctgctgcggatactgctgatgttgccgcatttgagcgcccatatcctctcgccgtacttgagaagaccggcgatgaacatcgagactgaggccatcagaagatcggtcccgctgccgacaatgtatgtgtaaatcacatacacagctcctagaacctgcaccaggagtgtactcagacggttgtatcactttgatgtaattgactgagttcaataaaaaaaaacctgcacggcgagagtctgcagatggcgcaaccaaagcgtgttgtcctcgagcgcgtatgcggtgatgttgtctgggccaccgaggtgcagcaggaggaacggcgcccagaacgccaccagctcgtgctcgtcggacctgccgtcgacggagaggtggcccagggtgtatatcgccgtggagtcggccagcaggtacgccgaccagaggaagaacatcagcacggaggaggagctgtgccgccggatccctccgaagatgaggaggaacacctgcaacgcgaagcttgctaggaccagcatctgtaccccccattcattccacaactgcaatacccctccgaattccattgttgctcagcttctcaaaatgcctacagtagcatgtcaaagaactcaataatattagcaaatgttgtgctcattaaatctttatatgtgttgagtgttgtgtacatgcagggaatatatgcaaagtgactgaatgtgtagcgggatctttgtacgaataaatactcaaaacttgtactgattcaaactgattcgatgaaccaagtatttatttactatcatcaaacttatccggggtattcgatcattgaactaaagtacacttacccattattaaacatgatatgaacctcgcatcacacaagcatagattgcttgcagtgactgttaataataaaaggacaggggtggtaacaaaagggtggaggagaaaagaacatacgtgggagtcaaattggcgagctttctggattcttcaagctgcaggtacaagcaggccggccatggcttggcaccatttggtccaatgtgtgaaggcaagattgccctggaacaagtttttccatacctcctctttcactcagcttgcattgctgccaagccgtttatactcctgcaagcaattcatggagcagagtataaacgaagagattactttcattttgaaacggagaagaaagagaaggttggcgtacatttaacgcttcccttgaattagcacgtggtggtacaagaaaacgaaaagcttgcaatctaaaaaatgaaaaacagaatcgaaaaatcgaaagaaaaacagaataatcgatgagtaggataggaatcgaagcatggcgatggaagagatgtgtacgtacttaccttcgttccatcagaaagctaggaagagaagaccgatggaggatgcgagcgaagaacttgggcggaagatcgaagagcgaaaactttctgcgctgctcctcctcgcctcggcggctgggtgtaggcgtgcagtgcagtggccaaacccaccgagtggagaggaggggaggggagggccgaccagccactagcaccaagcagagcgggggaaaggcaagacgaggtggcgccgtggccgccgctcgaagctc
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| CDS seq | atggcctcagtctcgatgttcatcgccggtcttctcaagtacggcgagaggatatgggcgctcaaatgcggcaacatcagcagtatccgcagcagcataagcaccagaaagttcaagactgacccttacgagttgctggcattgggtaccagcgaagaggagctgctgcttggagcccattcccaattcgacatctgcaaaggcgtctttgccgatatcataatgctgccaaatccgtcgctcctctcacgatccaaacggcgatcggtgatatcctacctggggatggatctgtacaagctggtggagatggagctgtccctgatgtacgacttcctctacaccaaggcagcggtgatccacacatggtacggcttctgcatccatttcgtctcgttgttcggcacggccaccacgttcctgctgttccagctgatcatcatcagcagcagaggagatgggtacagcagagaggatgtggtcatcagctatgtgctgctggttggggccttggtcctggagatcatatcagtgtgcagggctgtgctatccacctggacatgttctctgatgcaccggaggggcagggcatgggagtggcctctccacattatcacatcctttagccgccgtgtccacccggcaagccggagactctggtcaggctcaattggtcagtacaatctgttccacctttgcgcccgcaacacgaacgagattgggagcaggttggcaaccagattgggcctccaggactggtggaacatgatgcacttctcgggcaccttctcgaataccggctctttctcaatacaagatctcaagaaactggttttgcaagcactggaagagaaagagcgagcgctgcaatacaaggataccgacctgaactccaggggcagcttcatactcaagagtatgaaggcctatgacgactttgcccgatggagcgtcaacatcgacttcgacgagagcatccttgtttggcacatcgcgaccgagctgtacatccggagatccaaggccaggcacgcgaaagagctcgttgaggctaccgaggtgctgtccaattacatgatgtttctgctggtggtgaagcccaacatgctgcccggtgctgcacgacacaacatacatctcccctcctgtgaacagatagaagggcattgtcgtatgggctttggtggtgagaaggataacccggtggcggcatcgcccataagctggaacccatactgtatgctcaaggaattgctccaccatgatggccctagttgctcaagtatcccacggagggagaagctcgcggagatcgtgtggagtttctgccaattcgcactgggatcagtaaaggcaccaaatccacacggcgaatccatccgcgacagtgcaaacatgtactcagtgttgctcgccaacgagcttctcggcatcgagtcgcggtggtgtgagcagcgtgacaccttggaactcatcctaggggtgtgggtggagatgttgctgtacgctgcgaaccattgcagccaggagtcgcatgccaggcagctcagcaatggctgcgagttcatcaccatcgtgtcgttactagcacaccacttcaagtactactctggagcatccaggggcgcggacgagctgtatgagagtaacccttcaatgagaacggtgagaagttggtctagatccctttcttaa
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| Protein seq | MASVSMFIAGLLKYGERIWALKCGNISSIRSSISTRKFKTDPYELLALGTSEEELLLGAHSQFDICKGVFADIIMLPNPSLLSRSKRRSVISYLGMDLYKLVEMELSLMYDFLYTKAAVIHTWYGFCIHFVSLFGTATTFLLFQLIIISSRGDGYSREDVVISYVLLVGALVLEIISVCRAVLSTWTCSLMHRRGRAWEWPLHIITSFSRRVHPASRRLWSGSIGQYNLFHLCARNTNEIGSRLATRLGLQDWWNMMHFSGTFSNTGSFSIQDLKKLVLQALEEKERALQYKDTDLNSRGSFILKSMKAYDDFARWSVNIDFDESILVWHIATELYIRRSKARHAKELVEATEVLSNYMMFLLVVKPNMLPGAARHNIHLPSCEQIEGHCRMGFGGEKDNPVAASPISWNPYCMLKELLHHDGPSCSSIPRREKLAEIVWSFCQFALGSVKAPNPHGESIRDSANMYSVLLANELLGIESRWCEQRDTLELILGVWVEMLLYAANHCSQESHARQLSNGCEFITIVSLLAHHFKYYSGASRGADELYESNPSMRTVRSWSRSLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0005090 | OsLima_10g0005090.01 | Chr10 | 6992895 | 6995151 | - | NAM | ||
| CDS seq | atggcctcagtctcgatgttcatcgccggtcttctcaagtacggcgagaggatatgggcgctcaaatgcggcaacatcagcagtatccgcagcagcataagcaccagaaagttcaagactgacccttacgagttgctggcattgggtaccagcgaagaggagctgctgcttggagcccattcccaattcgacatctgcaaaggcgtctttgccgatatcataatgctgccaaatccgtcgctcctctcacgatccaaacggcgatcggtgatatcctacctggggatggatctgtacaagctggtggagatggagctgtccctgatgtacgacttcctctacaccaaggcagcggtgatccacacatggtacggcttctgcatccatttcgtctcgttgttcggcacggccaccacgttcctgctgttccagctgatcatcatcagcagcagaggagatgggtacagcagagaggatgtggtcatcagctatgtgctgctggttggggccttggtcctggagatcatatcagtgtgcagggctgtgctatccacctggacatgttctctgatgcaccggaggggcagggcatgggagtggcctctccacattatcacatcctttagccgccgtgtccacccggcaagccggagactctggtcaggctcaattggtcagtacaatctgttccacctttgcgcccgcaacacgaacgagattgggagcaggttggcaaccagattgggcctccaggactggtggaacatgatgcacttctcgggcaccttctcgaataccggctctttctcaatacaagatctcaagaaactggttttgcaagcactggaagagaaagagcgagcgctgcaatacaaggataccgacctgaactccaggggcagcttcatactcaagagtatgaaggcctatgacgactttgcccgatggagcgtcaacatcgacttcgacgagagcatccttgtttggcacatcgcgaccgagctgtacatccggagatccaaggccaggcacgcgaaagagctcgttgaggctaccgaggtgctgtccaattacatgatgtttctgctggtggtgaagcccaacatgctgcccggtgctgcacgacacaacatacatctcccctcctgtgaacagatagaagggcattgtcgtatgggctttggtggtgagaaggataacccggtggcggcatcgcccataagctggaacccatactgtatgctcaaggaattgctccaccatgatggccctagttgctcaagtatcccacggagggagaagctcgcggagatcgtgtggagtttctgccaattcgcactgggatcagtaaaggcaccaaatccacacggcgaatccatccgcgacagtgcaaacatgtactcagtgttgctcgccaacgagcttctcggcatcgagtcgcggtggtgtgagcagcgtgacaccttggaactcatcctaggggtgtgggtggagatgttgctgtacgctgcgaaccattgcagccaggagtcgcatgccaggcagctcagcaatggctgcgagttcatcaccatcgtgtcgttactagcacaccacttcaagtactactctggagcatccaggggcgcggacgagctgtatgagagtaacccttcaatgagaacggtgagaagttggtctagatccctttcttaa
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| Protein seq | MASVSMFIAGLLKYGERIWALKCGNISSIRSSISTRKFKTDPYELLALGTSEEELLLGAHSQFDICKGVFADIIMLPNPSLLSRSKRRSVISYLGMDLYKLVEMELSLMYDFLYTKAAVIHTWYGFCIHFVSLFGTATTFLLFQLIIISSRGDGYSREDVVISYVLLVGALVLEIISVCRAVLSTWTCSLMHRRGRAWEWPLHIITSFSRRVHPASRRLWSGSIGQYNLFHLCARNTNEIGSRLATRLGLQDWWNMMHFSGTFSNTGSFSIQDLKKLVLQALEEKERALQYKDTDLNSRGSFILKSMKAYDDFARWSVNIDFDESILVWHIATELYIRRSKARHAKELVEATEVLSNYMMFLLVVKPNMLPGAARHNIHLPSCEQIEGHCRMGFGGEKDNPVAASPISWNPYCMLKELLHHDGPSCSSIPRREKLAEIVWSFCQFALGSVKAPNPHGESIRDSANMYSVLLANELLGIESRWCEQRDTLELILGVWVEMLLYAANHCSQESHARQLSNGCEFITIVSLLAHHFKYYSGASRGADELYESNPSMRTVRSWSRSLS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0005090 | OsLima_10g0005090.02 | Chr10 | 6992615 | 6996677 | - | IsoSeq | ||
| CDS seq | atggggggtacagatgctggtcctagcaagcttcgcgttgcaggtgttcctcctcatcttcggagggatccggcggcacagctcctcctccgtgctgatgttcttcctctggtcggcgtacctgctggccgactccacggcgatatacaccctgggccacctctccgtcgacggcaggtccgacgagcacgagctggtggcgttctgggcgccgttcctcctgctgcacctcggtggcccagacaacatcaccgcatacgcgctcgaggacaacacgctttggttgcgccatctgcagactctcgccgtgcaggttctaggagctgtgtatgtgatttacacatacattgtcggcagcgggaccgatcttctgatggcctcagtctcgatgttcatcgccggtcttctcaagtacggcgagaggatatgggcgctcaaatgcggcaacatcagcagtatccgcagcagcataagcaccagaaagttcaa
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| Protein seq | MGGTDAGPSKLRVAGVPPHLRRDPAAQLLLRADVLPLVGVPAGRLHGDIHPGPPLRRRQVRRARAGGVLGAVPPAAPRWPRQHHRIRARGQHALVAPSADSRRAGSRSCVCDLHIHCRQRDRSSDGLSLDVHRRSSQVRREDMGAQMRQHQQYPQQHKHQKVQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.204845 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0190500 | RBH | 0.439044 | 1.294333 | 5.424936 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g11310 | RBH | 0.391605 | 0.816646 | 1.337885 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0190500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0004920 | RBH | 0.134926 | 1.271341 | 1.097242 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005000 | RBH | 0.102364 | 0.741197 | 2.334103 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0004980 | RBH | 0.000000 | 0.0 | 4.133798 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005330 | RBH | 0.0 | 0.040908 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0005040 | RBH | 1.704432 | 0.000000 | 9.006032 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0104700 | RBH | 3.473813 | 2.049007 | 0.5574235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005220 | RBH | 0.114166 | 0.0 | 1.618129 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0114300 | RBH | 7.9125845 | 2.172378 | 0.2287345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0005140 | RBH | 0.321764 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005270 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005010 | RBH | 0.102234 | 0.0 | 5.232686 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005370 | RBH | 0.0 | 1.110088 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G005170 | RBH | 0.0 | 0.0 | 1.479552 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005230 | RBH | 0.167636 | 0.000000 | 7.672295 |
