Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0003550 | OGI:10013400 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:4828281-4830851 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccgaagtactgctgtcaggtttcgtgatgtcaattcttcgaaaagcagctttatttgctattgaatatggtatgaatgagattaaatcagacagaaatgtacctaaagaactggggaaactacagagttcactgcaatctattcgtgcagttcttcaagaggcagagaggaagcagagtatttctagtgcactcaaggaatggctacataacctcaaagatgcggtgtatgacattgatgacattttggacaatgtttcaactgaagctttgaagcgccaggttgacaaaggcttggccactcaagccaaatgtatacatattcctcgtttgaaatttagcagcagagtgctgaaaaaaaatttgagtagcagagtgctgaaaaaaaaattgagcagcacattgatgaaaaaaagtttaagcagcagaataagagaagttcgtgaaaaacttgatgaaatagccgctaacaaaaaggacttcggactgactgagtgggaagtggctgatcagtgttctgaagaaccagagagagaatcatattcttttgtgtaccagcctgatataattggaagggatcatgttagagatgagattgttcaagacatcctatgagccgtagaaggtgatgatgatctttctgtgcttcctcttgttgggctcggagggatggggaaaactgcactggcaaaaatggtgtaccttgatcaacaagttagggagaggttcagcaatatgatgtggacttgtatcaccaataaatttaatctgaaaaggatagtgcaagatataatagagtctgccactggtgagagttgcaagcatctaaacatggaacatttacaaagcaagctcaggggaattcttcagaatggaaattatttccttgtattagatgatttgtggactgataatgtaaatgaatgggaagaactgaggcatctattgtcaagtggtgcaagaggtagtgtcataatggttactacacgcaaatataccgttgcatctatggtgggtacctcagagccatacaagatgggagcactcccttttgaggagtgtatgaaaatttttactagaattgcatttagacatggcgaggaaaagaactacccacagctattaaaaattggagagtgcattgtcaagaaatgcaccggagtaccattggcaataaaatcgttggcttcacttctattccgcatgcgcgaggaagctaaatggttgcgtgttaaagaagacgacttgtgggaaattgaacaaggtgacgatgatattctgccaaagctaaagttaagttacaatgctcttccacctgccctcaaaccatgtctttcctatttatcgatatttcccaagggctacgaatattacagaagatgcataatcatggtatggatggcacaagggcttctgcactccaaaagcttgagtgaacaaacagatgttggtaatcagtacattgctgaattaatgggaagttccttttttcaagatgccatgattacttttgatggaagcatgccacatttcaagatgcatgatatcgtacatgatctaggcagatatgttttggacagagagctagctgttattagctgtgaagtttcagaagtttcagaaacagtcaggcatctcatatgggacgacaagttctccgccgagcaagaattcccgaagcatataatgaccgcaagaaaggctcggacatttgctagttcatataatcatggtacagtaagtaaacaatttcttgaggtgctattctccgagtttttgcttctacgtgtattgatcatagcggaggttagcattgaagaactcccagattcaataggaaatctgaagcacctaaggtatcttgatctcacctggaacagaaccttaaaattccttccaaattctctctgcaagctgataaaccttcagacacttgatctttaccggagcgaccatctagtcaagttgccaagagatgtaaaaaagttaatcagcctcaagtacctgagcttgacatgtaaactgaagcatttgccagaaacaggacttcgtggttgggcttccttaacatccctgcagctgcactcatgcagtgaactgacctcactgactgaaggaattggctacttaacttccctagaaatgctgtggatcagtgactgcccaaagctcccttctctcccagccagcatgaagaacctctccgctctccgcgaaatgctcatcgacaactgcccggagcttgatttgatgcatccagaggaggccatggatgggctacagagccttcgatcattgcagattattggacttccaaagctagaatgtcttcctgagactctttcttctgcctcggcttcccttcagtatttcttgattgagcaatgccccttgctaagggagcttccaaacttcatgcaacatctctgcaatgacactgaccaccagagggtattcattaaggactgcccagccataaacagtagatgggtgaaagaggattaccatctatcttcctgcaggagcaataaggcatgtgctagaaaacagccacgcaaagagtactga
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| CDS seq | atggccgaagtactgctgtcaggtttcgtgatgtcaattcttcgaaaagcagctttatttgctattgaatatggtatgaatgagattaaatcagacagaaatgtacctaaagaactggggaaactacagagttcactgcaatctattcgtgcagttcttcaagaggcagagaggaagcagagtatttctagtgcactcaaggaatggctacataacctcaaagatgcggtgtatgacattgatgacattttggacaatgtttcaactgaagctttgaagcgccaggttgacaaaggcttggccactcaagccaaatggatggggaaaactgcactggcaaaaatggtgtaccttgatcaacaagttagggagaggttcagcaatatgatgtggacttgtatcaccaataaatttaatctgaaaaggatagtgcaagatataatagagtctgccactggtgagagttgcaagcatctaaacatggaacatttacaaagcaagctcaggggaattcttcagaatggaaattatttccttgtattagatgatttgtggactgataatgtaaatgaatgggaagaactgaggcatctattgtcaagtggtgcaagaggtagtgtcataatggttactacacgcaaatataccgttgcatctatggtgggtacctcagagccatacaagatgggagcactcccttttgaggagtgtatgaaaatttttactagaattgcatttagacatggcgaggaaaagaactacccacagctattaaaaattggagagtgcattgtcaagaaatgcaccggagtaccattggcaataaaatcgttggcttcacttctattccgcatgcgcgaggaagctaaatggttgcgtgttaaagaagacgacttgtgggaaattgaacaaggtgacgatgatattctgccaaagctaaagttaagttacaatgctcttccacctgccctcaaaccatgtctttcctatttatcgatatttcccaagggctacgaatattacagaagatgcataatcatggtatggatggcacaagggcttctgcactccaaaagcttgagtgaacaaacagatgttggtaatcagtacattgctgaattaatgggaagttccttttttcaagatgccatgattacttttgatggaagcatgccacatttcaagatgcatgatatcgtacatgatctaggcagatatgttttggacagagagctagctgttattagctgtgaagtttcagaagtttcagaaacagtcaggcatctcatatgggacgacaagttctccgccgagcaagaattcccgaagcatataatgaccgcaagaaaggctcggacatttgctagttcatataatcatggtacagtaagtaaacaatttcttgaggtgctattctccgagtttttgcttctacgtgtattgatcatagcggaggttagcattgaagaactcccagattcaataggaaatctgaagcacctaaggtatcttgatctcacctggaacagaaccttaaaattccttccaaattctctctgcaagctgataaaccttcagacacttgatctttaccggagcgaccatctagtcaagttgccaagagatgtaaaaaagttaatcagcctcaagtacctgagcttgacatgtaaactgaagcatttgccagaaacaggacttcgtggttgggcttccttaacatccctgcagctgcactcatgcagtgaactgacctcactgactgaaggaattggctacttaacttccctagaaatgctgtggatcagtgactgcccaaagctcccttctctcccagccagcatgaagaacctctccgctctccgcgaaatgctcatcgacaactgcccggagcttgatttgatgcatccagaggaggccatggatgggctacagagccttcgatcattgcagattattggacttccaaagctagaatgtcttcctgagactctttcttctgcctcggcttcccttcagtatttcttgattgagcaatgccccttgctaagggagcttccaaacttcatgcaacatctctgcaatgacactgaccaccagagggtattcattaaggactgcccagccataaacagtagatgggtgaaagaggattaccatctatcttcctgcaggagcaataaggcatgtgctagaaaacagccacgcaaagagtactga
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| Protein seq | MAEVLLSGFVMSILRKAALFAIEYGMNEIKSDRNVPKELGKLQSSLQSIRAVLQEAERKQSISSALKEWLHNLKDAVYDIDDILDNVSTEALKRQVDKGLATQAKWMGKTALAKMVYLDQQVRERFSNMMWTCITNKFNLKRIVQDIIESATGESCKHLNMEHLQSKLRGILQNGNYFLVLDDLWTDNVNEWEELRHLLSSGARGSVIMVTTRKYTVASMVGTSEPYKMGALPFEECMKIFTRIAFRHGEEKNYPQLLKIGECIVKKCTGVPLAIKSLASLLFRMREEAKWLRVKEDDLWEIEQGDDDILPKLKLSYNALPPALKPCLSYLSIFPKGYEYYRRCIIMVWMAQGLLHSKSLSEQTDVGNQYIAELMGSSFFQDAMITFDGSMPHFKMHDIVHDLGRYVLDRELAVISCEVSEVSETVRHLIWDDKFSAEQEFPKHIMTARKARTFASSYNHGTVSKQFLEVLFSEFLLLRVLIIAEVSIEELPDSIGNLKHLRYLDLTWNRTLKFLPNSLCKLINLQTLDLYRSDHLVKLPRDVKKLISLKYLSLTCKLKHLPETGLRGWASLTSLQLHSCSELTSLTEGIGYLTSLEMLWISDCPKLPSLPASMKNLSALREMLIDNCPELDLMHPEEAMDGLQSLRSLQIIGLPKLECLPETLSSASASLQYFLIEQCPLLRELPNFMQHLCNDTDHQRVFIKDCPAINSRWVKEDYHLSSCRSNKACARKQPRKEY |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0003550 | OsLima_10g0003550.01 | Chr10 | 4828281 | 4830851 | + | NAM | ||
| CDS seq | atggccgaagtactgctgtcaggtttcgtgatgtcaattcttcgaaaagcagctttatttgctattgaatatggtatgaatgagattaaatcagacagaaatgtacctaaagaactggggaaactacagagttcactgcaatctattcgtgcagttcttcaagaggcagagaggaagcagagtatttctagtgcactcaaggaatggctacataacctcaaagatgcggtgtatgacattgatgacattttggacaatgtttcaactgaagctttgaagcgccaggttgacaaaggcttggccactcaagccaaatggatggggaaaactgcactggcaaaaatggtgtaccttgatcaacaagttagggagaggttcagcaatatgatgtggacttgtatcaccaataaatttaatctgaaaaggatagtgcaagatataatagagtctgccactggtgagagttgcaagcatctaaacatggaacatttacaaagcaagctcaggggaattcttcagaatggaaattatttccttgtattagatgatttgtggactgataatgtaaatgaatgggaagaactgaggcatctattgtcaagtggtgcaagaggtagtgtcataatggttactacacgcaaatataccgttgcatctatggtgggtacctcagagccatacaagatgggagcactcccttttgaggagtgtatgaaaatttttactagaattgcatttagacatggcgaggaaaagaactacccacagctattaaaaattggagagtgcattgtcaagaaatgcaccggagtaccattggcaataaaatcgttggcttcacttctattccgcatgcgcgaggaagctaaatggttgcgtgttaaagaagacgacttgtgggaaattgaacaaggtgacgatgatattctgccaaagctaaagttaagttacaatgctcttccacctgccctcaaaccatgtctttcctatttatcgatatttcccaagggctacgaatattacagaagatgcataatcatggtatggatggcacaagggcttctgcactccaaaagcttgagtgaacaaacagatgttggtaatcagtacattgctgaattaatgggaagttccttttttcaagatgccatgattacttttgatggaagcatgccacatttcaagatgcatgatatcgtacatgatctaggcagatatgttttggacagagagctagctgttattagctgtgaagtttcagaagtttcagaaacagtcaggcatctcatatgggacgacaagttctccgccgagcaagaattcccgaagcatataatgaccgcaagaaaggctcggacatttgctagttcatataatcatggtacagtaagtaaacaatttcttgaggtgctattctccgagtttttgcttctacgtgtattgatcatagcggaggttagcattgaagaactcccagattcaataggaaatctgaagcacctaaggtatcttgatctcacctggaacagaaccttaaaattccttccaaattctctctgcaagctgataaaccttcagacacttgatctttaccggagcgaccatctagtcaagttgccaagagatgtaaaaaagttaatcagcctcaagtacctgagcttgacatgtaaactgaagcatttgccagaaacaggacttcgtggttgggcttccttaacatccctgcagctgcactcatgcagtgaactgacctcactgactgaaggaattggctacttaacttccctagaaatgctgtggatcagtgactgcccaaagctcccttctctcccagccagcatgaagaacctctccgctctccgcgaaatgctcatcgacaactgcccggagcttgatttgatgcatccagaggaggccatggatgggctacagagccttcgatcattgcagattattggacttccaaagctagaatgtcttcctgagactctttcttctgcctcggcttcccttcagtatttcttgattgagcaatgccccttgctaagggagcttccaaacttcatgcaacatctctgcaatgacactgaccaccagagggtattcattaaggactgcccagccataaacagtagatgggtgaaagaggattaccatctatcttcctgcaggagcaataaggcatgtgctagaaaacagccacgcaaagagtactga
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| Protein seq | MAEVLLSGFVMSILRKAALFAIEYGMNEIKSDRNVPKELGKLQSSLQSIRAVLQEAERKQSISSALKEWLHNLKDAVYDIDDILDNVSTEALKRQVDKGLATQAKWMGKTALAKMVYLDQQVRERFSNMMWTCITNKFNLKRIVQDIIESATGESCKHLNMEHLQSKLRGILQNGNYFLVLDDLWTDNVNEWEELRHLLSSGARGSVIMVTTRKYTVASMVGTSEPYKMGALPFEECMKIFTRIAFRHGEEKNYPQLLKIGECIVKKCTGVPLAIKSLASLLFRMREEAKWLRVKEDDLWEIEQGDDDILPKLKLSYNALPPALKPCLSYLSIFPKGYEYYRRCIIMVWMAQGLLHSKSLSEQTDVGNQYIAELMGSSFFQDAMITFDGSMPHFKMHDIVHDLGRYVLDRELAVISCEVSEVSETVRHLIWDDKFSAEQEFPKHIMTARKARTFASSYNHGTVSKQFLEVLFSEFLLLRVLIIAEVSIEELPDSIGNLKHLRYLDLTWNRTLKFLPNSLCKLINLQTLDLYRSDHLVKLPRDVKKLISLKYLSLTCKLKHLPETGLRGWASLTSLQLHSCSELTSLTEGIGYLTSLEMLWISDCPKLPSLPASMKNLSALREMLIDNCPELDLMHPEEAMDGLQSLRSLQIIGLPKLECLPETLSSASASLQYFLIEQCPLLRELPNFMQHLCNDTDHQRVFIKDCPAINSRWVKEDYHLSSCRSNKACARKQPRKEY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.092833 | 0.054808 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0161400 | SBH | 0.233407 | 0.0 | 0.285237 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07400 | SBH | 0.150264 | 0.0 | 0.069901 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0161400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003630 | RBH | 0.062287 | 0.803228 | 0.194126 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003600 | RBH | 0.000000 | 0.970145 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003520 | RBH | 0.749586 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003830 | RBH | 0.126337 | 0.054133 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003600 | RBH | 8.698890 | 1.343094 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0072900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003720 | RBH | 0.199826 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0080400 | RBH | 3.235963 | 0.4661645 | 6.8176445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003260 | RBH | 0.032501 | 0.006608 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003580 | RBH | 0.380963 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003730 | RBH | 3.184207 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003480 | RBH | 0.447288 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003810 | RBH | 0.170459 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003700 | RBH | 0.340562 | 0.276391 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003730 | RBH | 0.0 | 4.457654 | 0.0 |
