Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0003300 | OGI:10013560 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:4434633-4435230 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccaaaatttgcacaaaattcaaactcagattaagcaggaagaacagcacagtcaattaatgatggtagtagtaactaattcgttcatctttcacccatcctgaggctaactgaaatccattctgctcttcgcgaatgctaatctagctacctaactaagccatgaatcctgctctgccatggcggttcaacggtgagcggtgacgagggtctcgatgaagcgcagcccgtcgaaccgcggcgcgaaccggtcctccgccgcgctcctccgcccattccccctcgacgccggcgacccctgcagaagtaacaaacaaacacgcgcgagcgtgagcaatccacacccagccacaaggaacaaaggtctcgggatggagcgtgccgtgggattggagcatggggtgacgcagcgctcggtggcggcggcggtggcggcggacgcgacggcggtggccgcggccgaggcagtggcggcggcggcggcggcggcggcccacttcatctccggcagacggcgagggggggaggagagaccgccgcctcctctggagaagagcgagtgagctgagactgtgatggcggctgctgctgctgcagt
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| CDS seq | atgaagtgggccgccgccgccgccgccgccgccactgcctcggccgcggccaccgccgtcgcgtccgccgccaccgccgccgccaccgagcgctgcgtcaccccatgctccaatcccacggggtcgccggcgtcgagggggaatgggcggaggagcgcggcggaggaccggttcgcgccgcggttcgacgggctgcgcttcatcgagaccctcgtcaccgctcaccgttga |
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| Protein seq | MKWAAAAAAAATASAAATAVASAATAAATERCVTPCSNPTGSPASRGNGRRSAAEDRFAPRFDGLRFIETLVTAHR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0003300 | OsLima_10g0003300.01 | Chr10 | 4434633 | 4435230 | - | NAM | ||
| CDS seq | atgaagtgggccgccgccgccgccgccgccgccactgcctcggccgcggccaccgccgtcgcgtccgccgccaccgccgccgccaccgagcgctgcgtcaccccatgctccaatcccacggggtcgccggcgtcgagggggaatgggcggaggagcgcggcggaggaccggttcgcgccgcggttcgacgggctgcgcttcatcgagaccctcgtcaccgctcaccgttga
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| Protein seq | MKWAAAAAAAATASAAATAVASAATAAATERCVTPCSNPTGSPASRGNGRRSAAEDRFAPRFDGLRFIETLVTAHR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.386172 | 0.184048 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07450 | RBH | 0.516325 | 0.584071 | 0.519816 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0162100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003350 | RBH | 0.0 | 0.0 | 0.518143 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003300 | SBH | 1.039631 | 5.266933 | 5.424708 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003230 | RBH | 0.000000 | 0.0 | 2.047726 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003530 | SBH | 0.380166 | 0.394354 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003250 | SBH | 19.487225 | 33.480709 | 20.653507 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0065500 | RBH | 3.284315 | 3.0734855 | 16.6790835 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003470 | RBH | 0.0 | 0.0 | 1.389654 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0073100 | RBH | 5.9099915 | 0.6775605 | 13.8712965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003290 | RBH | 1.917082 | 0.483137 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003340 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003430 | RBH | 7.285769 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003190 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003530 | SBH | 0.755525 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003350 | SBH | 1.238168 | 8.613032 | 6.054692 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003490 | RBH | 0.0 | 13.309935 | 7.924054 |
