Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0002840 | OGI:10012160 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:3825632-3831539 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcattcgaggtatggcctgagaatccatagactcatcgtcattactctcagcctcttctagccagtcactacataagtgctggagagaagacaattttagcaattcatcgttgtttttatctacattactagtagacgctacagcactactataaagagtagcaaatctatccacttctgaaattttaatctggttaatggactcctttatttctaaatcattctttcctagagaaacccctaatttagaaaaatttgcagcaagagtcttatctggaattgaaacaacagaatttgtggtattaaacttgttacctgttagcgtctcgaggttatgaaccttttttagcagctctgcccggtttgccaccggcgcatctgcatttgccatcgccttctgtctttcactttgcctagttggaatagggtccactgggcgatgaggtcgccttcttgtcggggatcgagctccaactgcttgtgctgcatcctgggctttagatgtggcagcactggaggcactaagttggtcttcattggttgctagtactgccatcaagttcttagtcgatgctactcttccatcgcctgcaagccggctattcttggggagcaattcagactgcacgttgcagtccaatacatgctccacgggagacaacaagctagctgaaacatgctgtaattcttgtgcaatgctgacaggttcttgttgttgctctttgccatttgtaaccacctcatctgttcctgctagctgcacagcaacctcagtagaaagtaccttagtcgttgccaacttcgctagctgtgtcgaaacctcgtcggagtacaccacctcaccaacagccgccttggttgactcggagtttcctgtcccttgggctcccaattgactcatgggcgtttccaacactacggaggagtatgaggcaaacgcttccaactccgttgttgtagcaggcgtatctgagctaggagacggtgaaattgcttcattatctagaaccatattattggtgcgcgttgagggcagcttagccggcgctgagcctcccatttccatccttagcgacccatcagaaccattcttttggcgttttgggtccctatcttccatgtgaacatcatcatcaccaccattttttctttctccgtcctggtcaatatcatcaatcttcttctttcctttcccatccacctcaggcaattctggttcaaagaagatttcatagccatggtttcggacaacaatgtaaacactaggtggcaaatctgctaactcatcaactgccacctgcatcctaaccacaccatttttcctgagataaatcatgtccacagttgttgtttgaccaatgacagaaccaacagcatgtagactgagaaagtctctaatctcatatggcactccataaactttaaaccaagttttctttagaacaaacttcgcttcaatctcttgctccaacttgtcaatgactaggttcacatctattatataattaattaaaggaatagaaaaaggagcctccacgttcgctctcatggcctagaaattctcacattaatcggagaaaaagaagaaaaagaaaaagcagagtccatatagaaatacaatttaaaaatagtgtaatttggaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaattaggaaataactgaaattcagaattaaaatataaggaatattagaagaggagactagagtccatatagaaatacaattaggaaataactgaaattcggaattaaaatataaggaatattagaagaggagactagagtctatatagaaatacaaaataaaaatttatgctcaaactttctacatgaaaaaaaaatgtacgatgaaagtttctacagtaattaaaaatattctagtggaattttAaaaaaaattgtaagactgttaatatgatgaaacaactcagcaaatagaagttattatgatttcatctaataaagaatattctactccctccgtttcacaatgtaagttattctagcatttttcacattcatattgatgctaatgaatctatacatatatacctatctagattcattagtatcaatataaacaagcatagtggcccgcgcagattgcgcggctagcatcattatattttctctcatataatagcatatatgttttctcattatattattcaaatatattaaaatgacaacataattttaaattttgcaataactttacaaaactactaatgtgtaatatttatattatattttatatacgtgttagttattaattatttttaatattaaattttagttatttgtaaattatatatattcctatatggactctagactcgtcttttaatatttctttttttaattccgaattttctgtaaattgtatttttatatagagtctatgctcttcttccaatattatttatttttatttatgaatttttattatttctaattgtatttctatgtggactctaaactcatctttcaatattctttaatttttaatttcgaatttcagttgcttctaaattatattccaatatttgtattcctatattgaccttaattcttcttccaatgtttttcttaattttgaattttagttatttgtaaattgtatttttatacagactctaaactctacttttaattttattatgtttattccaaattttagttagtttgaaattcctatatggactctatactctacttctaatattccttatttttttaattccgaatttctatttttttttctaaattgtatttctatatatactctatactttacttctaatattccttatttttaattccgaatttatattatttcctaattgtatttctatatgtactctatattctacttctaatattccttatttttaattccgaatttcagttatttcctaattgtatttctatatgaactctatactctacttctaatatttctttttttttaattctgaatttcagttatttcctaattgtatttctatatggactctagtctcctcttctaatattcctttttttcattccgaatttcagttatttcctaattgtatttctatatagacagactctagtctcctcttctaatattcctttttttaattctgaatttcaactatttctaaattgtatttctatatggactctagtctcctcttctaatattccttattttttaattccgaatttcagctatttttaaattgtatttctatatggactctgtcttttctttttctccgattaatgtgagaatttctaggccatgagagcgaacttggaggttcctttttctattcctttaattatatatttaattccaaatttctttctaaattgtatttctatatggactctagtctcctcttctaatatttcttatttttaattccgaatttcagctatttttaaattgtatttctatatggactctgtattttctttttctccgattaatgtgagaatttctaggccatgagagcgaacgtggaggctcctttttctattccttaaattatatatttaattctgaatttctattttttcctaattgtatttctatatggactatatagtctacttctaatattccttatttttaattccgaatttcagttatttcctaattgtatttctatatggagtctatactctacttctaatatttcttatttttaattccgaatttcaggtattttctaattgtatttctatatggactctagtctcctcttctaatattccttattttttaattccgaatttcagctatttgtaaattgtatttctatatggactctagtcccctcttctaatattccttattttttaattccgaatttcagctatttgtaaattgtatttctatatggactctgctttttctttttctctgattaatgtgagaatttctaggccatgagagcgaacgtggaggctcctttttctattccttaaattatatatttaattccgaatttctattttttcctaattgtatttctatatggactctatagtctacttctaatattccttatttttaattccgaatttcagttattttctaattgtatttttatatggactctagtcccctcttctaatattccttattttttaattccgaatttcacgttcgctctcatggcctagaaattctcacattaatcggagaaaaagaagaaaaagaaaaagcagagtccatatagaaatacaatttAaaaatagtgtaatttggaattaaaaaataaggaatattagaagaggagactagagtccatatagaaatacaattaggaaataactgaaattcggaattaaaatataaggaatattagaagaggagactagagtccatatagaaatacaattaggaaataactgaaattcggaattaaaatataaggaatattagaagaggagactagagtctatatagaaatacaattaggaaataactgaaattcggaattaaaaataaggaatattagaagtagagtatatagttcatatagaaatacaattaggaaatgaaagaaatttggagttaaaattaaggaatattagaaatagagtatagagtctatatagaaatacaattaagaaaaaaaatagaaattcggaattaaaaaataaggattattagaagtagagtatagagtccatataggaatttaaaactaactaaaatttggaataaacgagtccatatagaaatacaattagaaaataactgaaattcggaattaaaatataaggaatattagaagaggagactagagtccatatagaaatacaattaggaaaaaactgaaattcggaattaaaatataaggaatattagaagaggagactagagtctatatagaaatacaattaggaaataactgaaattcgaaattaaaaataaggaatattggaagtagagtatatagttcatatagaaatacaattaggaaatgaaagaaatttggagttaaaaataaggaatattagaaatagagtatagagtccatatagaaatacaattaagaaaaaaaatagaaattcggaattaaaaaataaggattattagaagtagagtatagagtccatatagaaatttaaaactaactaaaatttggaataaacataataaaattaaaagtagagtttagagtccgtataaaaatacaatttataaataattaaaattcaaaattaagaaaaacatgggaataagagtttaatgtcaatataggaatacatatataggaatacaatttaaaagtaactgaaattcgaaattaaaaattaaagaatattgaaagatgagtttagagtccacataaaaatacaattagaaataataaaaattcagaaataaaaataaataatattggaagaagagcatagagtctatatagaaatacaatttacagaaaattcggaattAaaaaaagaaatattaaaagatgagtctagagtccatataagaatatatataatttacaaataactaaaatttgatattaaaaataattaataactaacacgtatataaaatataatatAaaaattcagaaataaaaataaataatataaaaaaatataatgatgctagccgcgcaatctgcgtgggccaccatgctagttaaagtcaaaactaggaacactgccaaccctacgcaacctgtctaattcgatcacagagggaaattgaaccatataagtgtctggagcagtctccttaacatcccattggaacctaaccggcaccaaccttcgcaattcagtgatcaagttgtccacagaaatgtggccattctccacccggacaattactattagcat
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| CDS seq | atgctaatagtaattgtccgggtggagaatggccacatttctgtggacaacttgatcactgaattgcgaaggttggtgccggttaggttccaatgggatgttaaggagactgctccagacacttatatggtggcagttgatgagttagcagatttgccacctagtgtttacattgttgtccgaaaccatggctatgaaatcttctttgaaccagaattgcctgaggtggatgggaaaggaaagaagaagattgatgatattgaccaggacggagaaagaaaaaatggtggtgatgatgatgttcacatggaagatagggacccaaaacgccaaaagaatggttctgatgggtcgctaaggatggaaatgggaggctcagcgccggctaagctgccctcaacgcgcaccaataatatggttctagataatgaagcaatttcaccgtctcctagctcagatacgcctgctacaacaacggagttggaagcgtttgcctcatactcctccgtagtgttggaaacgcccatgagtcaattgggagcccaagggacaggaaactccgagtcaaccaaggcggctgttggtgaggtggtgtactccgacgaggtttcgacacagctagcgaagttggcaacgactaaggtactttctactgaggttgctgtgcagctagcaggaacagatgaggtggttacaaatggcaaagagcaacaacaagaacctgtcagcattgcacaagaattacagcatgtttcagctagcttgttgtctcccgtggagcatgtattggactgcaacgtgcagtctgaattgctccccaagaatagccggcttgcaggcgatggaagagtagcatcgactaagaacttgatggcagtactagcaaccaatgaagaccaacttagtgcctccagtgctgccacatctaaagcccaggatgcagcacaagcagttggagctcgatccccgacaagaaggcgacctcatcgcccagtggaccctattccaactaggcaaagtgaaagacagaaggcgatggcaaatgcagatgcgccggtggcaaaccgggcagagctgctaaaaaaggttcataacctcgagacgctaacaggtaacaagtttaataccacaaattctgttgtttcaattccagataagactcttgctgcaaatttttctaaattaggggtttctctaggaaagaatgatttagaaataaaggagtccattaaccagattaaaatttcagaagtggatagatttgctactctttatagtagtgctgtagcgtctactagtaataagaggctgagagtaatgacgatgagtctatggattctcaggccatacctcgaatga
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| Protein seq | MLIVIVRVENGHISVDNLITELRRLVPVRFQWDVKETAPDTYMVAVDELADLPPSVYIVVRNHGYEIFFEPELPEVDGKGKKKIDDIDQDGERKNGGDDDVHMEDRDPKRQKNGSDGSLRMEMGGSAPAKLPSTRTNNMVLDNEAISPSPSSDTPATTTELEAFASYSSVVLETPMSQLGAQGTGNSESTKAAVGEVVYSDEVSTQLAKLATTKVLSTEVAVQLAGTDEVVTNGKEQQQEPVSIAQELQHVSASLLSPVEHVLDCNVQSELLPKNSRLAGDGRVASTKNLMAVLATNEDQLSASSAATSKAQDAAQAVGARSPTRRRPHRPVDPIPTRQSERQKAMANADAPVANRAELLKKVHNLETLTGNKFNTTNSVVSIPDKTLAANFSKLGVSLGKNDLEIKESINQIKISEVDRFATLYSSAVASTSNKRLRVMTMSLWILRPYLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0002840 | OsLima_10g0002840.01 | Chr10 | 3825632 | 3831539 | - | NAM | ||
| CDS seq | atgctaatagtaattgtccgggtggagaatggccacatttctgtggacaacttgatcactgaattgcgaaggttggtgccggttaggttccaatgggatgttaaggagactgctccagacacttatatggtggcagttgatgagttagcagatttgccacctagtgtttacattgttgtccgaaaccatggctatgaaatcttctttgaaccagaattgcctgaggtggatgggaaaggaaagaagaagattgatgatattgaccaggacggagaaagaaaaaatggtggtgatgatgatgttcacatggaagatagggacccaaaacgccaaaagaatggttctgatgggtcgctaaggatggaaatgggaggctcagcgccggctaagctgccctcaacgcgcaccaataatatggttctagataatgaagcaatttcaccgtctcctagctcagatacgcctgctacaacaacggagttggaagcgtttgcctcatactcctccgtagtgttggaaacgcccatgagtcaattgggagcccaagggacaggaaactccgagtcaaccaaggcggctgttggtgaggtggtgtactccgacgaggtttcgacacagctagcgaagttggcaacgactaaggtactttctactgaggttgctgtgcagctagcaggaacagatgaggtggttacaaatggcaaagagcaacaacaagaacctgtcagcattgcacaagaattacagcatgtttcagctagcttgttgtctcccgtggagcatgtattggactgcaacgtgcagtctgaattgctccccaagaatagccggcttgcaggcgatggaagagtagcatcgactaagaacttgatggcagtactagcaaccaatgaagaccaacttagtgcctccagtgctgccacatctaaagcccaggatgcagcacaagcagttggagctcgatccccgacaagaaggcgacctcatcgcccagtggaccctattccaactaggcaaagtgaaagacagaaggcgatggcaaatgcagatgcgccggtggcaaaccgggcagagctgctaaaaaaggttcataacctcgagacgctaacaggtaacaagtttaataccacaaattctgttgtttcaattccagataagactcttgctgcaaatttttctaaattaggggtttctctaggaaagaatgatttagaaataaaggagtccattaaccagattaaaatttcagaagtggatagatttgctactctttatagtagtgctgtagcgtctactagtaataagaggctgagagtaatgacgatgagtctatggattctcaggccatacctcgaatga
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| Protein seq | MLIVIVRVENGHISVDNLITELRRLVPVRFQWDVKETAPDTYMVAVDELADLPPSVYIVVRNHGYEIFFEPELPEVDGKGKKKIDDIDQDGERKNGGDDDVHMEDRDPKRQKNGSDGSLRMEMGGSAPAKLPSTRTNNMVLDNEAISPSPSSDTPATTTELEAFASYSSVVLETPMSQLGAQGTGNSESTKAAVGEVVYSDEVSTQLAKLATTKVLSTEVAVQLAGTDEVVTNGKEQQQEPVSIAQELQHVSASLLSPVEHVLDCNVQSELLPKNSRLAGDGRVASTKNLMAVLATNEDQLSASSAATSKAQDAAQAVGARSPTRRRPHRPVDPIPTRQSERQKAMANADAPVANRAELLKKVHNLETLTGNKFNTTNSVVSIPDKTLAANFSKLGVSLGKNDLEIKESINQIKISEVDRFATLYSSAVASTSNKRLRVMTMSLWILRPYLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g13530 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007740 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007830 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007910 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007730 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0057900 | RBH | 0.020833 | 0 | 0.072133 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003030 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0066000 | RBH | 0.147295 | 0.0117955 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0007570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007690 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0007710 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007610 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007660 | SBH | 0.0 | 0.0 | 0.0 |
