Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0002510 | OGI:10010450 | 5/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:3307898-3316272 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaacaacatcagaagaagggtgtttctcctccagtcctccccaactttgctgcttctccaatctcccccaaatccctctccaaatccctatctttgttctagatgctatccaaatcggagctccctgctgattagaagacctcagatagagcattatggagctctattgctgcagattgatgttggaagtgcatcgtcctctctaacccattgccttccctcgaattttttgccactaatctaggctgcaacttcacctagagacatccacaaggtcagtcatctcgccccatgttgatcttattggcagcagccctaatttgggtgatgtcctttctctctctggttttgcagccaaggagccaaatcccgttctcgtggctccttcttttttttctttcttggagtctcaaactagtttttggtgcaggttgaatctcagagagcagaacgtttcagcttcctttcttgaagtggtctacagctcaagataaagaaagtaagtttcctatctttttttatcagatcttcgatttcctggcaaatacaacagtttgctatatgattctattgtttgctgcttgctaggttaggcaaaggcaataattttattcttcagagtttgctggaggtgacaaaatattcaagattggtagagatattacttattgctgaaaacagtccacaagtaagtttaccattcctttctccattactctttggcccttataatgtataaataattgttttttcagaagttaaattttagtaacactaagttcatttgttcatggtaatgctgtgtatcaatttaccttttttaatctaaatagtaggaaacattacatcatgtttttctgtagaactaaaagcatgtcagtagaagatcggagttggatgtatggtgggtggcatgacaatggatgccactctgatgactgggtgcacaacacagatatgtttttagatcatgcttttcaaggtgtcccaaatgctgataagtttggagttgtttgtccctgctcaaattgtcgaaacagagttaggcgaaaaagaacagaaatgagctttcatctatgcaagtggggatatatgcctgggtacactagatggactgaacatggagaacgccctattagtttgcctagttttcaagagaactatgatactactgaccctttgcatgacatgttggacaacttaggagatgcaatgaacactgattttgtagaggatgagcctacagcagacgcaaatttcactcaacaatttaggatgaccctacaacttaggatgagccttcagaacagccactccacaatttcactcaaatttcatgtctaactgcagtcacacggttgatgggaataaaatcacatcacaacttatcttcagaatgtgtgaatagtttacttaccttgattactgatgtgctgccagagaaccacaaaatgccatctaacttatatgagtgcaagtgtattctaaatggcctaaaaatgccatatgtcaagatagatgtttgcattaataattgcatgatttactacaaacagaatgagaataaagaaaagtgtgatttttgtgatgagcctcgttatgaggttactgaagaagaaaatttagggaggaaacgaaagccagtaccacgcaaagttatgcgttatctccctttcataccaagattgcaaagaatgtatatggagccagaaactgcgaagcacatgaggtggcacaaggagggtcaccgagagaaaccagggattatggtgcaccctgctgatggagaagcttggaaacactttgataatgagtgttcagattttgccatggatcctagcaatgtgcgtgtcgcacttgcaactgatggcttcaatccatttggctttagtgcaacgcaatattcttgttggccagtttttgtcatacctttgaacttacccccagctctttgccaagaggatgaaaatatttttcttagccttgtgattcctggacctaaacatcctggaaagaacctgaatgtgtttatgcaacctatatctgatgagttcgtgtgtgcatggataggagtacaaacatatgatagttacttgaagcaaaattttaatatgcgagtttccatccattgctcaatccatgacctaccggcatatggaatgtttgctggatggagcactcatggtggtttggcctgtccagaatgcatgggggatgtagatactatttggctaccgaatggccacaagtatagttggtttgattcacattgaagatttctgccacctagtcatgaatttagggagcaacaaaatgcatttagaaaggatacaatagtgcatgattcacctccacgtcgattaaccggtgaagaggtgaaggcttacatgaatgatgtccaagcaaaaaattttgatgggtatggtgtgtcacataactggacgcacatccctgtattgtgggaattgccatatttttcgaagcttttgatcagacataatattgacataatgcacaatgagaagaatgttgctgaagccatttttaatacatgccttgacattcccgataagacaaaggataatgcaaaggctcgtcttgaccaggagttaatgtgcaatagaagtcacctcaaccttatagagaagccaaataataaatgggacaagcctagaggtccatattgtctaactagagcccaaaaaaaagatgttatgaaatggtttatggaccttaaatttccagatgggtatgcagcaaacctaaagcggggggttaatatggagcaactcaagatacatgggctcaagagccatgattaccatatatttatggagcgtctcttgcctgcaatgcttcgaggttttgtaaataatgatgtgtgggaggcattagctaaattaagctacttctatagattgatttgtgcaaaagaagttgaccctatgcaaatgcttcaattggaacaaaacataccggtcgtaatttgtaaattggagaaaattttcccaccgggttttttcaattcaatggaacatttagtggtccacctcccatatcaagtaagagttggtggtcccgcaacgtatatttggatgtataagtatgagaggtatgcagaattgatactgtcttatccataattattatttataaaatgaaagaactaatacttatattactacaggtttattaaaaaacttaagcagaaagttggtaacagggcacgtgtggaaggatcaattgtagaagcttatcttgtagaggagatttcacacttcacttctttatttttgccaaatctcattcctagttcacgaaacaaacctcgtcgttatgctcaagatggtcttccaagttcaagcagtcttagcttgtttcaagtgcgtgggtggaaatctggtagaggggtacctagaaccttaacatatgaagagtacaggatagccatgatatatatcttcacaaatatgagtgaaatggatgatcttgttaggtaagttttctaactctataataatattacaatttttgacatgcatgtactgaattatttagacactgcaaactgtagaaaatttgatcatgaacattggagacgttcgtgtccaccaaatcagatggagctagacaacataaggcggaatggcgctggtagaggcaaacctaacttgatagactggtttaaatcattggtataatttcccctatgtacttccacacaacaagcttttttggtagctacctaacacaaacattttaatttactttggttaatattgcagtgcatgatagatgcaagcatacatgctgatttgcgtgtgctatctcgagggtgtgggttcaaggttaagtcatatgatatttatgaagttaatggctacagatttcgctccgagaaatatgaaaaatcaaaagcgaagcttactacaattaacactggtgtgcttgctatgggaatcgatgacaccacaggcaaggaacttgagtattatggaattatcaaggatataatagagctgaaattcaatggggatgatcattttagcattgttctgtttgactgtcattggttccaccctattaatggaatacgacacttagataggtttggtttagttgaggttgcacatgaatcacataatccagcaaatgagccttttgttcttgctagccaagtgacccaagtgtattatattccatatgcctgcacaacagatcgaaatctaaatgcatggtggattgcatataaggttaggcctctaggcagcctagccattccatcactggatgactatagtgaagcaacctatactacagatgtcttccaagaagatggtctagaaggtgaatttattatagaccttggatcaggccttgataatcttatgccaactggtttagatgaggttattgatccacaagaattggatgtgttgagcaacccacgtattgttgagactgcagagattgaacgacctattctcgaattgtttgaagaagaaaatggatccgactctgacacagaaatgcatacagaaataaatattgtaccatttcgtgaagatgttgatgacttctaagtctatatattgcagctacttatacatataggtattgtgatacatgttgcatttgttgcaaacttctttgctgcattactatctacacatatgcaacttgcttatataattcattggcatatagtgcaccctttttattacttataaaatgcatttttggttttttgttgtgcaggatggcgcttggtcgtggaggtcctgctcgtgatgagactcgtgctagtaattctattagagagaacatggatgttgtttcagacgatgagggggagaatgccacagaaactccggtgttccgcattcgaggtctttcctcacttccacctcctattcccaatgaggctgatcacccattaatccagcaaaatggagatacgtaagtttatcaaagttatttctttctttaaaaatggtaataaagtattctttgacaagcatagtgttctcacataggcaatggacggaactcccaaaacttggtaaggacaggaggccagctagcgtgttgacttctattttgagagatcaccatcctggtattgttgaatataatggtaagagtgtggctgcaatgaaatgggtgcactaccaagtaaaagttgattcgaatgggcgatcaaaggctgatgaagttgatgaagaattttgggtaaatttaaataatgtgcattatgtgttgcaacccttcgtatgactgattacatctttgcatatcttttttagctaagatttagatttgaacctgattacgaatgtgttgcaagacaacaagttggaagatgtgctgacattctcctcaatggtataaagtactatgctcgaattcaggccatacaggatcattacctgaaagtgaaaaacagacaattgcgtgacaagattgctgggcaacagtatttaactaaggagcagtactttgcccagaaaccagtctggtgcaacgaagaggcttggaatgctcttgctgatgattggtgtgatccaaagtttagggaaaaatctgagaagaatcgagccaatcgtgctagctcaaaatacaaacctcacagaggtggatccaactccattgcaacagtatgccAaaaactggtgattcctaaacttaatactcattgtaaacaaactcatcgtttacacatttaatttgggttgtttgtgcataatctgaagaacaagggcgggatgtaacagaagtcgaggcttgggttcatactcacaaaggagacaatcccaataatcctaacatgctgaacacacaagaagcaaccgaatgtttggtaaatttcttgcttgaatcatcatgtgtatattttttcaccatttttcaatgttctgtacaaatgtttgtgcacagaggagatacaaaagtaaatttgctgaaagaaatggagatagaagtgatcctatgagctctccagtggactctttagctctttatgagagcaattatgggaaacctcatggtaaatggcctctattcaatggagttgttaacaacaaagaggcactcgtagaagtgaaaagtggctcatcttcatcagctctcaagcatcaacgtcgtgaagcagaagatcttcaaagaaggcgagaatctgagaagttccaactacagaatgtttatacaaagaaaatgtcagagtggagtacaaaggcatacaaaagctatacaatgggacataagcttcttgaggtgcaatctttcttctataaggagaaaattttgacttgttttaatttttttgtcatcactaaaagaattatatttaagttggttaatcatatgtatttgcagacaatggctagggaccaaggatattcttctgctgacattcctcctcccttatctccacctcctgaacctccaacaagtccagttattgttcttgtaagtgatgctgatatatagctgcatgtgctactgaaactacctaaccgttctgaattacacattgcaactcaagcaaatgctagtgatttttcatgttctagtcatgctctgccacatgagtatctatcagtaccttgcatattgttagttttgttgtttgccctatatatacaagccttatcaaacaaattggttgttcactaaatttgttgaataaaattgtaacaattgtttttttataggatgactcccaagtatcatgtgttagagaggaaactggagatgacagggtaaatgttatagctgaaggaatgtttggtggctacttgaccaattcatctgctaatggtgccaccacctttctcccagctttagatgaacttgatccattttaatttcaactggctgtggtcatagggctaacttttgggaaaacttggtagttatagtgcctaacttttgggtaaagctgattcttaccgaaacatgtgtaatgaagtggaattatgccattttgagggcaagatgattataatgcatcttttgaatgctatatatggtgctggtggatttaaacaatattttgttcctgtgtttaatcatattatgtgtggtggtggtctttgtgcaatattacttacctttagtgcaatttattttacataaatcctaatgaattgattaacatcataaattgtaataattatattaaaaaaatgctcaacgtaataagtaattcctagggaatgcatgtttttgttccctagggtttcaaaacgaatctaacaactctagggacagtaactttacacgtcacttgacacccaccggcttgtcatttttccctaggtcaaacaaccctagggagcattcctttccctaggtttctcttgcaaaaaccctagggagctctttgtttcccgtagaccgtttccctagagggcattccctagggttcactctagggaaacctcttccctagagtttttgcaccattccgttgggtttttggctctagggatgccattgaattctagtatgcgacgtatagtagcgggggcggagcacagcggtcagtggcgccacaggttctcccgatttgtgtgtaaggcatcccaaatttctcccgatcttgattggttcatgtttttgggatgtattggttggtgtttctagggatggattagttgattattggttaaaatttcttgccgatttatgtctattattggttgattggttgttgttggatgcaaagatgctgctctttttatagggatggattggttaacagatccacccgcgaaatatatttttgcatgtgggtcttttaaggagccgtacgaaaaaatgcttgttgggttttgcaggcacaactagttacgatgatccgcctgcaacctacagggggctcttgtccagaaaaatcgtttttttagtagtgtgcataatatgagatgttagtcctatgacagtttgaagtcactttacagctcaaagaaggatgtaaacgtttctaaaaaaggaagcatctaaacagaatattggacgataaagacgcatttgccaactttacttatatattctgttgttttaagcatatattctgatacgcgactggttcccttccaaagttccactctacctatatgccatacgtttttctcctttgtacaaatcttcagttcacaattgcttttcatacctagatttcaaataatttaagtgaaacatataaaactttttaactcctcaaactttcaactgagatcacaaacattataccaaaatctaaaacatctttgtattcaaaatctttaacttcttccaattaaatctctgagtttttgctcaaatcttgaactttcaaccggttgcagagctcatcaccggagaagatataa
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| CDS seq | atggcgcttggtcgtggaggtcctgctcgtgatgagactcgtgctagtaattctattagagagaacatggatgttgtttcagacgatgagggggagaatgccacagaaactccggtgttccgcattcgaggtctttcctcacttccacctcctattcccaatgaggctgatcacccattaatccagcaaaatggagatacacaatggctagggaccaaggatattcttctgctgacattcctcctcccttatctccacctcctgaacctccaacaagatgactcccaagtatcatgtgttagagaggaaactggagatgacaggagctcatcaccggagaagatataa |
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| Protein seq | MALGRGGPARDETRASNSIRENMDVVSDDEGENATETPVFRIRGLSSLPPPIPNEADHPLIQQNGDTQWLGTKDILLLTFLLPYLHLLNLQQDDSQVSCVREETGDDRSSSPEKI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0002510 | OsLima_10g0002510.01 | Chr10 | 3307898 | 3316272 | + | NAM | ||
| CDS seq | atggcgcttggtcgtggaggtcctgctcgtgatgagactcgtgctagtaattctattagagagaacatggatgttgtttcagacgatgagggggagaatgccacagaaactccggtgttccgcattcgaggtctttcctcacttccacctcctattcccaatgaggctgatcacccattaatccagcaaaatggagatacacaatggctagggaccaaggatattcttctgctgacattcctcctcccttatctccacctcctgaacctccaacaagatgactcccaagtatcatgtgttagagaggaaactggagatgacaggagctcatcaccggagaagatataa
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| Protein seq | MALGRGGPARDETRASNSIRENMDVVSDDEGENATETPVFRIRGLSSLPPPIPNEADHPLIQQNGDTQWLGTKDILLLTFLLPYLHLLNLQQDDSQVSCVREETGDDRSSSPEKI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0002510 | OsLima_10g0002510.02 | Chr10 | 3312982 | 3314965 | + | IsoSeq | ||
| CDS seq | atgtttatacaaagaaaatgtcagagtggagtacaaaggcatacaaaagctatacaatgggacataagcttcttgagacaatggctagggaccaaggatattcttctgctgacattcctcctcccttatctccacctcctgaacctccaacaagtccagttattgttcttgatgactcccaagtatcatgtgttagagaggaaactggagatgaca
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| Protein seq | MFIQRKCQSGVQRHTKAIQWDISFLRQWLGTKDILLLTFLLPYLHLLNLQQVQLLFLMTPKYHVLERKLEMT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr10 | 3314348 | 3314611 | + | OsLima_10g0002510.02 | OsLima_10g0002510.01,OsLima_10g0002510.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.974750 | 0.218374 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002720 | RBH | 0.636969 | 0.329063 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0049200 | RBH | 7.2166595 | 16.909237 | 4.8870985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0054800 | RBH | 6.085197 | 10.714139 | 21.7393485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002440 | RBH | 1.627977 | 0.0 | 0.345912 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
