Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0001640 | OGI:10007960 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:2484848-2486541 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cagaaaatatttctattcagtacttgtatatcgacagtgtacataggagactggaattacaagtttgacttcattacatccttcaacaacacaaagacacaagtagaatgcatatgtcaaaaccaaacaagctatagccgtgctttaagatcattgctatacacatagtactcttattttgcgctgaaatcattatgacttattattcactcagttcgaatatagcaaatcattgttacactacttcttggctttgaaccaaatcaagcgttggatcgacgcttccttgtagatgtagtacatccattcttgccattgacgaaagctacagcagactgcacatacttggtatgaggtggtatttgtgattcccatgttactaattcaaaatcgccatctggaattgcagcacatccagctattaggtctctgaataacaaacttggttttttcctgtttggactatcatccctttctactcgaggtggcatcagatgaagacgagtacgataagatgatccaaatctagttatgtctattggatgctctttctcaatgatatcttttggatgttcaccatattttgacaagttactttttaccatctccttgaagtgctgcaatacgctgttccataattgaaaatcatggttccttctaagcaagtcagcaaccacgtttgcagttatcagtgatccacccaagacaactgcaagatcatttgcaaccatggccatcttaggatggtccttttcatctatgcttccaaatgctagcatcttgaaaaggtagctatattcctcttgtgataaactgtttagacgaactgtctttactgttccaaaccttgcaagctttccaatccgacttatgattatcactttgctccctcgatctgtcatttgacttacagtacaatagaactttacccagtcatcttcatctatgtccataaaaaattcacctactatcaaagtcctctcccttttgaactttgtgtgctccattccccacatattatctccattgatgtacaaaatcgaacgaaagtaagatctgatccgctcgtcaccacagacatggctgaccaaagttttctttcctaccctgcagccaccaatgattggaagaacaagaggaccaccctgatgacaaggattttgcaacaaaatgttgataatctgctgcttttcggcatgacgaccaaacataaaattgtcagtataaaggtaagcatcgtagggtctgcgacagacacgttcacatcccactaacaatacaacaaactcattgatattggaaatggcagcttccaaattgtttagcacaatttctaattcattgtcatcagcagggcttccaggggtaccaaaaattgtgcgcgagcgtttcaaagaaacagacatagtacacaactttctcacctcttcgtcctttggtgatttgtacttgattgtgtccagcatgtagtaccctcgatacatgctttctgcaagcatcttgagttgcattaacatcatagggtttgtgatgcatcgccgatctgcttcctcgacaactatgtggactctaagtaggagttccttcagacttcatcttgtcatctatagaagtactttccatgtatttcttcatcagaaatgacgtgagtcggttgattaggtcacttgcaattgcagataaggctacctcca
More
|
||||||||||
| CDS seq | atgatgttaatgcaactcaagatgcttgcagaaagcatgtatcgagggtactacatgctggacacaatcaagtacaaatcaccaaaggacgaagagcagattatcaacattttgttgcaaaatccttgtcatcagggtggtcctcttgttcttccaatcattggtggctgcagggtaggaaagaaaactttggtcagccatgtctgtggtgacgagcggatcagatcttactttcgttcgattttgtacatcaatggagataatatgtggggaatggagcacacaaagttcaaaagggagaggactttgatagtaggtgaattttttatggacatagatgaagatgactgggtaaagttctattgtactgtaagtcaaatgacagatcgagggagcaaagtgataatcataagtcggattggaaagcttgcaaggtttggaacagtaaagacagttcgtctaaacagtttatcacaagaggaatatagctaccttttcaagatgctagcatttggaagcatagatgaaaaggaccatcctaagatggccatggttgcaaatgatcttgcagttgtcttgggtggatcactgataactgcaaacgtggttgctgacttgcttagaaggaaccatgattttcaattatggaacagcgtattgcagcacttcaaggagatggtaaaaagtaacttgtcaaaatatggtgaacatccaaaagatatcattgagaaagagcatccaatagacataactagatttggatcatcttatcgtactcgtcttcatctgatgccacctcgagtagaaagggatgatagtccaaacaggaaaaaaccaagtttgttattcagagacctaatagctggatgtgctgcaattccagatggcgattttgaattagtaacatgggaatcacaaataccacctcataccaagtatgtgcagtctgctgtagctttcgtcaatggcaagaatggatgtactacatctacaaggaagcgtcgatccaacgcttga
More
|
||||||||||
| Protein seq | MMLMQLKMLAESMYRGYYMLDTIKYKSPKDEEQIINILLQNPCHQGGPLVLPIIGGCRVGKKTLVSHVCGDERIRSYFRSILYINGDNMWGMEHTKFKRERTLIVGEFFMDIDEDDWVKFYCTVSQMTDRGSKVIIISRIGKLARFGTVKTVRLNSLSQEEYSYLFKMLAFGSIDEKDHPKMAMVANDLAVVLGGSLITANVVADLLRRNHDFQLWNSVLQHFKEMVKSNLSKYGEHPKDIIEKEHPIDITRFGSSYRTRLHLMPPRVERDDSPNRKKPSLLFRDLIAGCAAIPDGDFELVTWESQIPPHTKYVQSAVAFVNGKNGCTTSTRKRRSNA |
||||||||||
| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0001640 | OsLima_10g0001640.01 | Chr10 | 2484848 | 2486541 | - | NAM | ||
| CDS seq | atgatgttaatgcaactcaagatgcttgcagaaagcatgtatcgagggtactacatgctggacacaatcaagtacaaatcaccaaaggacgaagagcagattatcaacattttgttgcaaaatccttgtcatcagggtggtcctcttgttcttccaatcattggtggctgcagggtaggaaagaaaactttggtcagccatgtctgtggtgacgagcggatcagatcttactttcgttcgattttgtacatcaatggagataatatgtggggaatggagcacacaaagttcaaaagggagaggactttgatagtaggtgaattttttatggacatagatgaagatgactgggtaaagttctattgtactgtaagtcaaatgacagatcgagggagcaaagtgataatcataagtcggattggaaagcttgcaaggtttggaacagtaaagacagttcgtctaaacagtttatcacaagaggaatatagctaccttttcaagatgctagcatttggaagcatagatgaaaaggaccatcctaagatggccatggttgcaaatgatcttgcagttgtcttgggtggatcactgataactgcaaacgtggttgctgacttgcttagaaggaaccatgattttcaattatggaacagcgtattgcagcacttcaaggagatggtaaaaagtaacttgtcaaaatatggtgaacatccaaaagatatcattgagaaagagcatccaatagacataactagatttggatcatcttatcgtactcgtcttcatctgatgccacctcgagtagaaagggatgatagtccaaacaggaaaaaaccaagtttgttattcagagacctaatagctggatgtgctgcaattccagatggcgattttgaattagtaacatgggaatcacaaataccacctcataccaagtatgtgcagtctgctgtagctttcgtcaatggcaagaatggatgtactacatctacaaggaagcgtcgatccaacgcttga
More
|
|||||||
| Protein seq | MMLMQLKMLAESMYRGYYMLDTIKYKSPKDEEQIINILLQNPCHQGGPLVLPIIGGCRVGKKTLVSHVCGDERIRSYFRSILYINGDNMWGMEHTKFKRERTLIVGEFFMDIDEDDWVKFYCTVSQMTDRGSKVIIISRIGKLARFGTVKTVRLNSLSQEEYSYLFKMLAFGSIDEKDHPKMAMVANDLAVVLGGSLITANVVADLLRRNHDFQLWNSVLQHFKEMVKSNLSKYGEHPKDIIEKEHPIDITRFGSSYRTRLHLMPPRVERDDSPNRKKPSLLFRDLIAGCAAIPDGDFELVTWESQIPPHTKYVQSAVAFVNGKNGCTTSTRKRRSNA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0131500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04450 | RBH | 0.866180 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0131500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001720 | SBH | 0.347791 | 17.609373 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001680 | SBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001670 | SBH | 0.0 | 3.949432 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001630 | RBH | 0.0 | 0.036502 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0037200 | RBH | 0.153976 | 1.5423435 | 0.436142 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001780 | RBH | 0.0 | 0.804315 | 0.347561 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0041500 | RBH | 1.3979695 | 4.2184525 | 0.0933765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001520 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001740 | SBH | 0.046791 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0055480 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001720 | RBH | 0.080978 | 2.853226 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001700 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001580 | RBH | 0.0 | 0.000000 | 0.538350 |
