Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0001570 | OGI:10007710 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:2388839-2396617 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taccatagtctagctagactctgacttgaggtgtttgtgtgtgagagtcatggaggccgccggcgccggggaagccgtggccatgacagcagcagccacgggtgctttgggtcctgtcatcgagaagctcggcgatttgcttcgcaatgagcacatggctgctctggagggaagccgcggagacattgagttcatcaaatctgaactcgagccgctgcgctccctcctcctgaggatatgggataaggaggatcgtcttgacgcggcgtgcaaggagtggatggcggaggcgaggatgctgtcctacgacatggaggacgccatcgacggcttcaggttcatgcttgctgtggaggctgctgctgcgacgagccctttcgagggaatgagaaatcaggtgcaggagctggtaaaccgttgctgcgagaagcagtggattacagaggccatcatcgacgcagacgcccctgcggctttgtcctcgtctccttccctgccccgcaagaatgcgtcggagctcgtggaggtggacgagaagaaagcggagctcatcaagttgctcaagcacaaagagagagtgtgcatacatggctctgctgggatgggcaagaccactcttgctggcctcgcgtaccaagcagtgagcgagcaattcgactgccgcaccttcgtgtcggtctgtccgagccaaagcatgatgcacgttctgactagcattaccagtgaagtcattgcgtctgctatcatcaaagcaatcagcgacaaacagaggtaggagttgatattctatcacttcgattcgatctactcctatacagtatgtgtatccgtaatcttatggagtagtatgttttgttggcagagaattaacagtgaataataatactgcaccaacaactcaaggcaccggtgaagccgacgaacaatgtctcatcgacagcatactggagctcctaacgtacaggaggtatgcatataatcatcgtcacatcgatcgatctattatgtgtgctggatctggttataattccttttcgtaacaatgttgtcgtcccttataaaaaaaaaaatctcagacaagtaacagacagcagcgcaccagttgcgggcaccggtatagcagacggcgccaaaactgacggttcagctcttcctaccaccgacactgcaactctcgctagcaccggtatagcagacggcgccaaaactgacggttcagctcttcctaccaccgacgctgcaactctcgctagcaccggtatagctgacacaaaaactgacggctcatctgtcgctcttgctggcactggtggtataggcgacgcaaagactgaaagcgcacctcatgctgcgactggtgcagacaacacaaagaaagctctcatcgacaggatatcaacgagattcgtcaccaacaaaaggtgtgcatatttcttacatctacatagtacatgctcaatgcaacgcaaatatatgtatatcacatagtgtggcgccatatatataaacttactctaatcccaaaaaaacataaaggatgtgtttagttcacgctaaaattggaagtttgattgaaattggaacgatgtgacggaaaagttaaaagtttgtgtgtgtagaaaagttttgatgtgatggaaaagtgggaagtttgaaactaaggttccccacttttccatcacatcaaaactttcctaaacacataaacttccaactttttcgccacatcgtttcaatttcaaccaaactttcaattttgacgtgaactaaacacaccctctataggaaagttttgatgtgatgaaaaagttgaaagtttgaagaaaaagttaagaactaaatcaggccaaaattcgcaggaaactaaatgccagtgcacagcttgctggtgccggtgttgacgacgacaaacaatatctcgtcaacatcgtattgaaattgctaggagaaaaaaggtacgcacattatttatcacatttaaaaatacaaagtatcacatacgcactgctatgctccatgtttgtatgtattctctgcacggttttcatgttttcgcgtcacatgtagttacagtactcattcctagaaatattcacagaaaagtaaccgactgtgcaccggttgctgggacgaccgatgtagaggatgatgaacaatatctcgtcgatatcttgtcacaattccttgctgaccaaaggtatgcatatccttacatctacgtgctcaatgctattaccggccacaaatagatttttttagccattcatggtccttgtgcatatttaagatacacatattggttttaaaaaaaaaagaagaaagataaacatatttgttttaatggtatggaacagactacaggagactacccctttcttgctttcgttgggggctccgtgtttttccgccgccagccgtcccccttctttaattcctctgctctcctcttcattgctcgagcgggacaccggatgcctgactaccgttataaaggagacaacaggaacttcatcctgtggatatacgacttgtgtatttgcaaccgctgcaaacactgtcggatccatcggccctcaatcctcatggcagatctggtgtcccctagactagcactattagagcaggtacaataatatactatataagccagctataaacacatatcgataagataaaagaagagagggatgagcagcgggccataaatttgtagctagctgcagcacaaactccaaaacactgtgtgtatgacaggtgagatcatatatagctgacacatctcccttctcatcatcaataggtcacacaagccaacttgtgataacctttcctaaagagatttgctccagtccaacaaaaagtacctcgagataccagtacctcacggtaccaaatcatttccgatcgttagatgtaacaatgtccatcctgcctcgcaagattcaacgatcggaaacgatttggtaccgtaacgtaccggtacctcgagatactttttgttggaccagagtaaatctctttcctaaaacctcacggaacaaaaatgagcaagattagaaacaagaatcaagcacaccgtaaaagctaaccacaagctttaaacagtacaaaagggctagctgatgtgaattaatatcaagctgcaaataaaaaggaacaggagacactacaactagctgactcgaaaggcatttagataggcatactaatacaacaaagacaaaagtaaattgtggtaaggacttgctgaaaataaaaggaacagacaacactgttccaagaatatcacaagttcagaccggtaccagcaaatgaccacagagttgctttggactaactgtaggacagcaactgcggtaacttcaagaactaccgatgctaggaaaaatatatattatttgaggtgaaagaagtttgtagaggacaattaaaaacaagcagtgattgcttaagagaataaccattgtagacagacctgtctcaaatcacattgaacaaacaagaaaccagatgcagaacctgcactaaatgtcactttgaacctgcctaaaagaatagccactgtagatagatagaacctgtgatttatgcgacaattgctattgtctgttgatctaagctgcttaagagaaatcctctgcctctgtcttgcagtcctggtagtagacaaaattcactgtttgtcgatctgaaaaccagagcaacaagttttgtgctgctgaataaaaagcacatcacagataactgcagttattggaaagcaaactgaaggcgaagagacataaacacacagcaaaagaaaactgaaaggggtcagctgcagctagaatacaacccgaagaaaagatcagaaatgctgggcggtcctgccactgcaatttttgaagaaaaaagaaagaacaaccaaactgcttcactgaatttcaccaggaatgaatcaaaatgagacacaaagggatcttaggtcttaggctatcttctttgttactgcaatggcacagtcattttagtctacaatgtggtattcaagatgttgaatttgcaatatcaaaatgaattgtatgtgtaggagtattgtttgattaagatataaagtggttaacataaagtatcaatatttatatcatataattgtcaagttaaaataacaggttataaattttttgtcttggtgcacaaataatttaaagtggattgtcaatgtcatggacatatgatttatgaaggcaacatttttatatgcttgaaattttttttaaaataaatatttagcacaatgtataaatgtttacgtacttggtttacatggtgtacttactttcaatttatcggtgtagttcaggaatatatgtaatacactttacggctgttgaaatttttcagaatagattttattgctatttactaaaatattttagctttcatagcttttattgctatttactaagatggtactttgcattctctttgttaatgtaatggttgagtttggtaatttatatacaaatataaggatgtattttaaattgtattcgaaagtggcagggatgggtaattctacaaacaaatttagggtgcattttaatttgcattttatattggcataggtgggtagttcagattgaaatcgagagggttattttttcgtaaggatctaggtcattattttttttgtaaaacataataacaaagtaaatgtctattattaacaaactaaagtcctgattaacgtgcataagaacagagtaatcctttttagtatcacgtctcatgaggattaatgtggaggttctcatggaactataattaataccacctctttctcttgatctttttaggtatcttgtcattgtggatgacatttggcattgccaacaatgggaagtcataaggaagtctcttgtaaagaatgaccggggcagtagaattatcatgacaactcgtgttaattcagtagttgaaaaatgttgcaaggacgaccatgctgttgtttgtgaagtaacggcgctttctatggatgctgcagtagctttatcggaaaagatattcaatgtccacactgctccatcagacaagaagagctgttcttctatagctaaactgtctggtcgtatgccgttagcaataatctgcatatcggccgcagtggcacagctgctatcaccgccatctgcaacaaatcggtttgatgtggccttatgccaagcattaaaaggatttgcagaaattccctgcatgaaaccgttggttgagagtctagcccttggctaccactgccttcccccgcatctcaagacttgcttgctggaatgcagcatatataccccaaaccaaagattcgaaagggatgatctgatcaggatttggatggacgaagggtttgctgacgaggaacaagctcctggttactttgaggagcttgtcaaatgggggtatatttcgatttccccggctgaaggcagacgccatagccgggttgccgaatatgaaatcagcgccgtggtactagccttcctcagattccaggcagaagaacatggctttgttgcttccgcggggtatttctccaacatagagtccctgtgtggtcgacgacacagtaggatatctgtccagggaggcctgggttcatgggttgtttcaagattggatttctcatgcatgcgcacgctcgtggtttttggacgagcaagtttaataccattcgatcgtttgagccacctgcgagtgctgcatctagacgaggaggacacgagcttggagggtgcagcagatctatacaatttcccggatttgggcgacgatgatctggtggatatatgtgaactgcttttgctgaggtacgtgaaactaaagggctgcaaaatcaccatgctgcctccacaaattggacaactgaagcttctggagactctggacgtgagaggtacaggtgtcagggagctaccaagggagatcggggagctgcagcgactcaagactctgaatgtaagtaacacggcggtgacacaagtaccaaaggaaatcgggaagctgcacatgctcaagactctggacgtaagcgacacaaacgtgcgtgaactccccgcggaaataagagaactagaaaacctggagacgcttgacgtgagcaacaccatggttgcaaagttacccagggaaatcagagccctgcagctgttgaagacactgcacgtaagtggcatagctgtcacggaaaaagagctagctgaggaaatcggacagctgcagcatctggagacacttgatgtcagtaacacaaaggttgcgaagctacccatggaaatttggaacctgcagcagctcaagactctgaatattagcaacaccaatgtcagagagctaccttgggaagctggccagcgttccaactccatcagtgtggttgccggcaacaaggattcccctaaagtggtgaacttgcttgagggcgcagtggacaattatggtcatatttgttcgcgggagaacatatccattaccctctttgatcgtttcggctccagctgggaacctatacctgtggcgagatttaagattcccggcaaacatatcagtctcccggattggctcaataaagaaactctcagcgacatttcatccttagaaatcaatctctggaaactgagggaggatgacctcaagattcttcaggagatgcccaagcttcaggttcttgcactacgggtcgaagttctccccagaacagccatcactggcgcagggttctcaaggctggagagcttctgtgttgattgccgtgtgccacgactgagcttccagagtgaagccatgccggtgttgaaacatcttcagttcaagttctatgctttccgggcaaccaaacaagaacctatgggcatcgtgcacctctcgagtctccgaagtgtcgatttcaggtgtgcctccgggtacacaacggatgctccgggcatccgtgagattatcaatcaggtgaggaaagaagccaaggagcaccgcaaccgtatcaccctttgcatcaacacgaaagagatcgtccatgacattgtggctggtagcactggtacagctggtagcagtgcggtaagtgtgactgataagaaacctgagcctaccggtaatgaggacattattgacaatggaaacaatatttcggtcagaagtagtggcctacctgaatggatttactttcaggtacgtttctgttgatttgatgtagcttcacaacttgaatgcatggtggcgatgagtgttacgaacaaatatctaattagtgcacgttgcactttatttttttctcaacttttgcctgcagtgatccatggtggcgatccttatcctagctttgtacggccgtcatcgtctttttgagaaaattgggttgcgtcatcgtgcttaatttaatcaaaagacagcttgaagtgtttcatccatcccgaagaagtatggttttccctcctgaagtcacctgacgcgcgccttagcagagtggtgagtggtgactgaccttgtggagacgcgaggcactctggcagccggccggtgagggcagcaagatttcgctcactctttgcggtcgaagacacgtctgttaggaataatccttgtgtgctgattagtagtagctatatatggttagttgctgattttgtgggtggatgtgtcggtctgattggaggctacgtttactttccttttattaggatttatttccctgtaatagcttacttaagcgataaaatagagtctggaaaagctgccaagttttgcagcacc
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| CDS seq | atggaggccgccggcgccggggaagccgtggccatgacagcagcagccacgggtgctttgggtcctgtcatcgagaagctcggcgatttgcttcgcaatgagcacatggctgctctggagggaagccgcggagacattgagttcatcaaatctgaactcgagccgctgcgctccctcctcctgaggatatgggataaggaggatcgtcttgacgcggcgtgcaaggagtggatggcggaggcgaggatgctgtcctacgacatggaggacgccatcgacggcttcaggttcatgcttgctgtggaggctgctgctgcgacgagccctttcgagggaatgagaaatcaggtgcaggagctggtaaaccgttgctgcgagaagcagtggattacagaggccatcatcgacgcagacgcccctgcggctttgtcctcgtctccttccctgccccgcaagaatgcgtcggagctcgtggaggtggacgagaagaaagcggagctcatcaagttgctcaagcacaaagagagagtgtgcatacatggctctgctgggatgggcaagaccactcttgctggcctcgcgtaccaagcagtgagcgagcaattcgactgccgcaccttcgtgtcggtctgtccgagccaaagcatgatgcacgttctgactagcattaccagtgaagtcattgcgtctgctatcatcaaagcaatcagcgacaaacagagagaattaacagtgaataataatactgcaccaacaactcaaggcaccggtgaagccgacgaacaatgtctcatcgacagcatactggagctcctaacgtacaggagacaagtaacagacagcagcgcaccagttgcgggcaccggtatagcagacggcgccaaaactgacggttcagctcttcctaccaccgacactgcaactctcgctagcaccggtatagcagacggcgccaaaactgacggttcagctcttcctaccaccgacgctgcaactctcgctagcaccggtatagctgacacaaaaactgacggctcatctgtcgctcttgctggcactggtggtataggcgacgcaaagactgaaagcgcacctcatgctgcgactggtgcagacaacacaaagaaagctctcatcgacaggatatcaacgagattcgtcaccaacaaaagaaaagtaaccgactgtgcaccggttgctgggacgaccgatgtagaggatgatgaacaatatctcgtcgatatcttgtcacaattccttgctgaccaaaggtatcttgtcattgtggatgacatttggcattgccaacaatgggaagtcataaggaagtctcttgtaaagaatgaccggggcagtagaattatcatgacaactcgtgttaattcagtagttgaaaaatgttgcaaggacgaccatgctgttgtttgtgaagtaacggcgctttctatggatgctgcagtagctttatcggaaaagatattcaatgtccacactgctccatcagacaagaagagctgttcttctatagctaaactgtctggtcgtatgccgttagcaataatctgcatatcggccgcagtggcacagctgctatcaccgccatctgcaacaaatcggtttgatgtggccttatgccaagcattaaaaggatttgcagaaattccctgcatgaaaccgttggttgagagtctagcccttggctaccactgccttcccccgcatctcaagacttgcttgctggaatgcagcatatataccccaaaccaaagattcgaaagggatgatctgatcaggatttggatggacgaagggtttgctgacgaggaacaagctcctggttactttgaggagcttgtcaaatgggggtatatttcgatttccccggctgaaggcagacgccatagccgggttgccgaatatgaaatcagcgccgtggtactagccttcctcagattccaggcagaagaacatggctttgttgcttccgcggggtatttctccaacatagagtccctgtgtggtcgacgacacagtaggatatctgtccagggaggcctgggttcatgggttgtttcaagattggatttctcatgcatgcgcacgctcgtggtttttggacgagcaagtttaataccattcgatcgtttgagccacctgcgagtgctgcatctagacgaggaggacacgagcttggagggtgcagcagatctatacaatttcccggatttgggcgacgatgatctggtggatatatgtgaactgcttttgctgaggtacgtgaaactaaagggctgcaaaatcaccatgctgcctccacaaattggacaactgaagcttctggagactctggacgtgagaggtacaggtgtcagggagctaccaagggagatcggggagctgcagcgactcaagactctgaatgtaagtaacacggcggtgacacaagtaccaaaggaaatcgggaagctgcacatgctcaagactctggacgtaagcgacacaaacgtgcgtgaactccccgcggaaataagagaactagaaaacctggagacgcttgacgtgagcaacaccatggttgcaaagttacccagggaaatcagagccctgcagctgttgaagacactgcacgtaagtggcatagctgtcacggaaaaagagctagctgaggaaatcggacagctgcagcatctggagacacttgatgtcagtaacacaaaggttgcgaagctacccatggaaatttggaacctgcagcagctcaagactctgaatattagcaacaccaatgtcagagagctaccttgggaagctggccagcgttccaactccatcagtgtggttgccggcaacaaggattcccctaaagtggtgaacttgcttgagggcgcagtggacaattatggtcatatttgttcgcgggagaacatatccattaccctctttgatcgtttcggctccagctgggaacctatacctgtggcgagatttaagattcccggcaaacatatcagtctcccggattggctcaataaagaaactctcagcgacatttcatccttagaaatcaatctctggaaactgagggaggatgacctcaagattcttcaggagatgcccaagcttcaggttcttgcactacgggtcgaagttctccccagaacagccatcactggcgcagggttctcaaggctggagagcttctgtgttgattgccgtgtgccacgactgagcttccagagtgaagccatgccggtgttgaaacatcttcagttcaagttctatgctttccgggcaaccaaacaagaacctatgggcatcgtgcacctctcgagtctccgaagtgtcgatttcaggtgtgcctccgggtacacaacggatgctccgggcatccgtgagattatcaatcaggtgaggaaagaagccaaggagcaccgcaaccgtatcaccctttgcatcaacacgaaagagatcgtccatgacattgtggctggtagcactggtacagctggtagcagtgcgtga
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| Protein seq | MEAAGAGEAVAMTAAATGALGPVIEKLGDLLRNEHMAALEGSRGDIEFIKSELEPLRSLLLRIWDKEDRLDAACKEWMAEARMLSYDMEDAIDGFRFMLAVEAAAATSPFEGMRNQVQELVNRCCEKQWITEAIIDADAPAALSSSPSLPRKNASELVEVDEKKAELIKLLKHKERVCIHGSAGMGKTTLAGLAYQAVSEQFDCRTFVSVCPSQSMMHVLTSITSEVIASAIIKAISDKQRELTVNNNTAPTTQGTGEADEQCLIDSILELLTYRRQVTDSSAPVAGTGIADGAKTDGSALPTTDTATLASTGIADGAKTDGSALPTTDAATLASTGIADTKTDGSSVALAGTGGIGDAKTESAPHAATGADNTKKALIDRISTRFVTNKRKVTDCAPVAGTTDVEDDEQYLVDILSQFLADQRYLVIVDDIWHCQQWEVIRKSLVKNDRGSRIIMTTRVNSVVEKCCKDDHAVVCEVTALSMDAAVALSEKIFNVHTAPSDKKSCSSIAKLSGRMPLAIICISAAVAQLLSPPSATNRFDVALCQALKGFAEIPCMKPLVESLALGYHCLPPHLKTCLLECSIYTPNQRFERDDLIRIWMDEGFADEEQAPGYFEELVKWGYISISPAEGRRHSRVAEYEISAVVLAFLRFQAEEHGFVASAGYFSNIESLCGRRHSRISVQGGLGSWVVSRLDFSCMRTLVVFGRASLIPFDRLSHLRVLHLDEEDTSLEGAADLYNFPDLGDDDLVDICELLLLRYVKLKGCKITMLPPQIGQLKLLETLDVRGTGVRELPREIGELQRLKTLNVSNTAVTQVPKEIGKLHMLKTLDVSDTNVRELPAEIRELENLETLDVSNTMVAKLPREIRALQLLKTLHVSGIAVTEKELAEEIGQLQHLETLDVSNTKVAKLPMEIWNLQQLKTLNISNTNVRELPWEAGQRSNSISVVAGNKDSPKVVNLLEGAVDNYGHICSRENISITLFDRFGSSWEPIPVARFKIPGKHISLPDWLNKETLSDISSLEINLWKLREDDLKILQEMPKLQVLALRVEVLPRTAITGAGFSRLESFCVDCRVPRLSFQSEAMPVLKHLQFKFYAFRATKQEPMGIVHLSSLRSVDFRCASGYTTDAPGIREIINQVRKEAKEHRNRITLCINTKEIVHDIVAGSTGTAGSSA |
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| Function | Disease resistance protein Pik-1 [UniProtKB/Swiss-Prot:F2VYU4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0001570 | OsLima_10g0001570.01 | Chr10 | 2388839 | 2396159 | + | NAM | ||
| CDS seq | atggaggccgccggcgccggggaagccgtggccatgacagcagcagccacgggtgctttgggtcctgtcatcgagaagctcggcgatttgcttcgcaatgagcacatggctgctctggagggaagccgcggagacattgagttcatcaaatctgaactcgagccgctgcgctccctcctcctgaggatatgggataaggaggatcgtcttgacgcggcgtgcaaggagtggatggcggaggcgaggatgctgtcctacgacatggaggacgccatcgacggcttcaggttcatgcttgctgtggaggctgctgctgcgacgagccctttcgagggaatgagaaatcaggtgcaggagctggtaaaccgttgctgcgagaagcagtggattacagaggccatcatcgacgcagacgcccctgcggctttgtcctcgtctccttccctgccccgcaagaatgcgtcggagctcgtggaggtggacgagaagaaagcggagctcatcaagttgctcaagcacaaagagagagtgtgcatacatggctctgctgggatgggcaagaccactcttgctggcctcgcgtaccaagcagtgagcgagcaattcgactgccgcaccttcgtgtcggtctgtccgagccaaagcatgatgcacgttctgactagcattaccagtgaagtcattgcgtctgctatcatcaaagcaatcagcgacaaacagagagaattaacagtgaataataatactgcaccaacaactcaaggcaccggtgaagccgacgaacaatgtctcatcgacagcatactggagctcctaacgtacaggagacaagtaacagacagcagcgcaccagttgcgggcaccggtatagcagacggcgccaaaactgacggttcagctcttcctaccaccgacactgcaactctcgctagcaccggtatagcagacggcgccaaaactgacggttcagctcttcctaccaccgacgctgcaactctcgctagcaccggtatagctgacacaaaaactgacggctcatctgtcgctcttgctggcactggtggtataggcgacgcaaagactgaaagcgcacctcatgctgcgactggtgcagacaacacaaagaaagctctcatcgacaggatatcaacgagattcgtcaccaacaaaagaaaagtaaccgactgtgcaccggttgctgggacgaccgatgtagaggatgatgaacaatatctcgtcgatatcttgtcacaattccttgctgaccaaaggtatcttgtcattgtggatgacatttggcattgccaacaatgggaagtcataaggaagtctcttgtaaagaatgaccggggcagtagaattatcatgacaactcgtgttaattcagtagttgaaaaatgttgcaaggacgaccatgctgttgtttgtgaagtaacggcgctttctatggatgctgcagtagctttatcggaaaagatattcaatgtccacactgctccatcagacaagaagagctgttcttctatagctaaactgtctggtcgtatgccgttagcaataatctgcatatcggccgcagtggcacagctgctatcaccgccatctgcaacaaatcggtttgatgtggccttatgccaagcattaaaaggatttgcagaaattccctgcatgaaaccgttggttgagagtctagcccttggctaccactgccttcccccgcatctcaagacttgcttgctggaatgcagcatatataccccaaaccaaagattcgaaagggatgatctgatcaggatttggatggacgaagggtttgctgacgaggaacaagctcctggttactttgaggagcttgtcaaatgggggtatatttcgatttccccggctgaaggcagacgccatagccgggttgccgaatatgaaatcagcgccgtggtactagccttcctcagattccaggcagaagaacatggctttgttgcttccgcggggtatttctccaacatagagtccctgtgtggtcgacgacacagtaggatatctgtccagggaggcctgggttcatgggttgtttcaagattggatttctcatgcatgcgcacgctcgtggtttttggacgagcaagtttaataccattcgatcgtttgagccacctgcgagtgctgcatctagacgaggaggacacgagcttggagggtgcagcagatctatacaatttcccggatttgggcgacgatgatctggtggatatatgtgaactgcttttgctgaggtacgtgaaactaaagggctgcaaaatcaccatgctgcctccacaaattggacaactgaagcttctggagactctggacgtgagaggtacaggtgtcagggagctaccaagggagatcggggagctgcagcgactcaagactctgaatgtaagtaacacggcggtgacacaagtaccaaaggaaatcgggaagctgcacatgctcaagactctggacgtaagcgacacaaacgtgcgtgaactccccgcggaaataagagaactagaaaacctggagacgcttgacgtgagcaacaccatggttgcaaagttacccagggaaatcagagccctgcagctgttgaagacactgcacgtaagtggcatagctgtcacggaaaaagagctagctgaggaaatcggacagctgcagcatctggagacacttgatgtcagtaacacaaaggttgcgaagctacccatggaaatttggaacctgcagcagctcaagactctgaatattagcaacaccaatgtcagagagctaccttgggaagctggccagcgttccaactccatcagtgtggttgccggcaacaaggattcccctaaagtggtgaacttgcttgagggcgcagtggacaattatggtcatatttgttcgcgggagaacatatccattaccctctttgatcgtttcggctccagctgggaacctatacctgtggcgagatttaagattcccggcaaacatatcagtctcccggattggctcaataaagaaactctcagcgacatttcatccttagaaatcaatctctggaaactgagggaggatgacctcaagattcttcaggagatgcccaagcttcaggttcttgcactacgggtcgaagttctccccagaacagccatcactggcgcagggttctcaaggctggagagcttctgtgttgattgccgtgtgccacgactgagcttccagagtgaagccatgccggtgttgaaacatcttcagttcaagttctatgctttccgggcaaccaaacaagaacctatgggcatcgtgcacctctcgagtctccgaagtgtcgatttcaggtgtgcctccgggtacacaacggatgctccgggcatccgtgagattatcaatcaggtgaggaaagaagccaaggagcaccgcaaccgtatcaccctttgcatcaacacgaaagagatcgtccatgacattgtggctggtagcactggtacagctggtagcagtgcgtga
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| Protein seq | MEAAGAGEAVAMTAAATGALGPVIEKLGDLLRNEHMAALEGSRGDIEFIKSELEPLRSLLLRIWDKEDRLDAACKEWMAEARMLSYDMEDAIDGFRFMLAVEAAAATSPFEGMRNQVQELVNRCCEKQWITEAIIDADAPAALSSSPSLPRKNASELVEVDEKKAELIKLLKHKERVCIHGSAGMGKTTLAGLAYQAVSEQFDCRTFVSVCPSQSMMHVLTSITSEVIASAIIKAISDKQRELTVNNNTAPTTQGTGEADEQCLIDSILELLTYRRQVTDSSAPVAGTGIADGAKTDGSALPTTDTATLASTGIADGAKTDGSALPTTDAATLASTGIADTKTDGSSVALAGTGGIGDAKTESAPHAATGADNTKKALIDRISTRFVTNKRKVTDCAPVAGTTDVEDDEQYLVDILSQFLADQRYLVIVDDIWHCQQWEVIRKSLVKNDRGSRIIMTTRVNSVVEKCCKDDHAVVCEVTALSMDAAVALSEKIFNVHTAPSDKKSCSSIAKLSGRMPLAIICISAAVAQLLSPPSATNRFDVALCQALKGFAEIPCMKPLVESLALGYHCLPPHLKTCLLECSIYTPNQRFERDDLIRIWMDEGFADEEQAPGYFEELVKWGYISISPAEGRRHSRVAEYEISAVVLAFLRFQAEEHGFVASAGYFSNIESLCGRRHSRISVQGGLGSWVVSRLDFSCMRTLVVFGRASLIPFDRLSHLRVLHLDEEDTSLEGAADLYNFPDLGDDDLVDICELLLLRYVKLKGCKITMLPPQIGQLKLLETLDVRGTGVRELPREIGELQRLKTLNVSNTAVTQVPKEIGKLHMLKTLDVSDTNVRELPAEIRELENLETLDVSNTMVAKLPREIRALQLLKTLHVSGIAVTEKELAEEIGQLQHLETLDVSNTKVAKLPMEIWNLQQLKTLNISNTNVRELPWEAGQRSNSISVVAGNKDSPKVVNLLEGAVDNYGHICSRENISITLFDRFGSSWEPIPVARFKIPGKHISLPDWLNKETLSDISSLEINLWKLREDDLKILQEMPKLQVLALRVEVLPRTAITGAGFSRLESFCVDCRVPRLSFQSEAMPVLKHLQFKFYAFRATKQEPMGIVHLSSLRSVDFRCASGYTTDAPGIREIINQVRKEAKEHRNRITLCINTKEIVHDIVAGSTGTAGSSA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0001570 | OsLima_10g0001570.02 | Chr10 | 2395494 | 2396617 | + | IsoSeq | ||
| CDS seq | atgacctcaagattcttcaggagatgcccaagcttcaggttcttgcactacgggtcgaagttctccccagaacagccatcactggcgcagggttctcaaggctggagagcttctgtgttgattgccgtgtgccac |
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| Protein seq | MTSRFFRRCPSFRFLHYGSKFSPEQPSLAQGSQGWRASVLIAVCH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr10 | 2395924 | 2396157 | + | OsLima_10g0001570.02 | OsLima_10g0001570.02,OsLima_10g0001570.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.069367 | 0.170020 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0132500 | RBH | 0.079760 | 0.058815 | 0.905652 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04290 | RBH | 0.035566 | 0.026084 | 0.133190 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0132500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001650 | RBH | 0.000000 | 1.507686 | 0.545971 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001620 | RBH | 0.0 | 0.903177 | 0.115501 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001610 | RBH | 0.0 | 1.282125 | 0.879603 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001550 | RBH | 0.0 | 0.061883 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001530 | RBH | 0.0 | 2.923046 | 0.485990 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0036200 | RBH | 0.72669 | 0.496116 | 0.2758695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001700 | RBH | 0.027868 | 0.253321 | 0.070994 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0038900 | SBH | 0.015219 | 1.538173 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001500 | SBH | 0.0 | 0.056308 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012830 | SBH | 1.077260 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001680 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001460 | RBH | 0.0 | 1.196148 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001630 | RBH | 0.0 | 1.024686 | 0.502206 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001500 | RBH | 0.270587 | 2.277101 | 1.112302 |
